mRNA_7091 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|168009
Unique NamemRNA_7091
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|168009 vs. uniprot
Match: A0A835YSG3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSG3_9STRA)

HSP 1 Score: 149 bits (376), Expect = 1.060e-45
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 1 
Query:    1 MNTSLQNTKSRSLRYRILLTVSLLTIVRITYAMPPYPYIATDYATQLSLFTHHVWIGGFCIVGGAAHGAIFTNV 222
            MNTSLQNTKSRSLRYRILLTVSLLTIVRITYAMPPYPYIATDYATQLSLFTHHVWIGGFCIVGGAAHGAIFTNV
Sbjct:    1 MNTSLQNTKSRSLRYRILLTVSLLTIVRITYAMPPYPYIATDYATQLSLFTHHVWIGGFCIVGGAAHGAIFTNV 74
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BLAST of jgi.p|Trimin1|168009 vs. uniprot
Match: B6CWT4_9PHAE (PSI P700 chlorophyll a apoprotein A1 (Fragment) n=3 Tax=Phaeophyceae TaxID=2870 RepID=B6CWT4_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 5.480e-21
Identity = 40/41 (97.56%), Postives = 41/41 (100.00%), Query Frame = 1 
Query:   91 YAMPPYPYIATDYATQLSLFTHHVWIGGFCIVGGAAHGAIF 213
            YAMPPYPYIATDYATQLSLFTHH+WIGGFCIVGGAAHGAIF
Sbjct:   81 YAMPPYPYIATDYATQLSLFTHHMWIGGFCIVGGAAHGAIF 121
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BLAST of jgi.p|Trimin1|168009 vs. uniprot
Match: A0A7S2LFM9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LFM9_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 1.420e-20
Identity = 38/41 (92.68%), Postives = 41/41 (100.00%), Query Frame = 1 
Query:   91 YAMPPYPYIATDYATQLSLFTHHVWIGGFCIVGGAAHGAIF 213
            YAMPPYPY+ATDYATQLSLFTHH+WIGGFC+VGGAAHGAIF
Sbjct:   74 YAMPPYPYLATDYATQLSLFTHHMWIGGFCVVGGAAHGAIF 114
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BLAST of jgi.p|Trimin1|168009 vs. uniprot
Match: A0A060IBC1_9PHAE (Photosystem I P700 chlorophyll a apoprotein A1 (Fragment) n=2 Tax=PX clade TaxID=569578 RepID=A0A060IBC1_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 1.500e-20
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 1 
Query:   91 YAMPPYPYIATDYATQLSLFTHHVWIGGFCIVGGAAHGAIF 213
            YAMPPYPYIATDYATQLSLFTHHVWIGGFCIVGGAAHGAIF
Sbjct:  305 YAMPPYPYIATDYATQLSLFTHHVWIGGFCIVGGAAHGAIF 345
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BLAST of jgi.p|Trimin1|168009 vs. uniprot
Match: A5HW74_9STRA (Photosystem I P700 chlorophyll A apoprotein A1 (Fragment) n=3 Tax=Xanthophyceae TaxID=2833 RepID=A5HW74_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 1.650e-20
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 1 
Query:   91 YAMPPYPYIATDYATQLSLFTHHVWIGGFCIVGGAAHGAIF 213
            YAMPPYPYIATDYATQLSLFTHHVWIGGFCIVGGAAHGAIF
Sbjct:  292 YAMPPYPYIATDYATQLSLFTHHVWIGGFCIVGGAAHGAIF 332
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BLAST of jgi.p|Trimin1|168009 vs. uniprot
Match: A0A0F6WGP2_9STRA (PSI P700 apoprotein A1 (Fragment) n=2 Tax=Bacillariophyta TaxID=2836 RepID=A0A0F6WGP2_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 1.680e-20
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 1 
Query:   91 YAMPPYPYIATDYATQLSLFTHHVWIGGFCIVGGAAHGAIF 213
            YAMPPYPYIATDYATQLSLFTHHVWIGGFCIVGGAAHGAIF
Sbjct:  305 YAMPPYPYIATDYATQLSLFTHHVWIGGFCIVGGAAHGAIF 345
[Close]
BLAST of jgi.p|Trimin1|168009 vs. uniprot
Match: B7ZEN0_9STRA (Photosystem I P700 chlorophyll a apoprotein A1 (Fragment) n=3 Tax=Xanthophyceae TaxID=2833 RepID=B7ZEN0_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 1.690e-20
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 1 
Query:   91 YAMPPYPYIATDYATQLSLFTHHVWIGGFCIVGGAAHGAIF 213
            YAMPPYPYIATDYATQLSLFTHHVWIGGFCIVGGAAHGAIF
Sbjct:  281 YAMPPYPYIATDYATQLSLFTHHVWIGGFCIVGGAAHGAIF 321
[Close]
BLAST of jgi.p|Trimin1|168009 vs. uniprot
Match: A0A0F6YS29_9STRA (PSI P700 apoprotein A1 (Fragment) n=3 Tax=Bacillariophyta TaxID=2836 RepID=A0A0F6YS29_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 1.740e-20
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 1 
Query:   91 YAMPPYPYIATDYATQLSLFTHHVWIGGFCIVGGAAHGAIF 213
            YAMPPYPYIATDYATQLSLFTHHVWIGGFCIVGGAAHGAIF
Sbjct:  321 YAMPPYPYIATDYATQLSLFTHHVWIGGFCIVGGAAHGAIF 361
[Close]
BLAST of jgi.p|Trimin1|168009 vs. uniprot
Match: A5HW92_9STRA (Photosystem I P700 chlorophyll a apoprotein A1 (Fragment) n=4 Tax=Xanthophyceae TaxID=2833 RepID=A5HW92_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 1.920e-20
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 1 
Query:   91 YAMPPYPYIATDYATQLSLFTHHVWIGGFCIVGGAAHGAIF 213
            YAMPPYPYIATDYATQLSLFTHHVWIGGFCIVGGAAHGAIF
Sbjct:  325 YAMPPYPYIATDYATQLSLFTHHVWIGGFCIVGGAAHGAIF 365
[Close]
BLAST of jgi.p|Trimin1|168009 vs. uniprot
Match: D4HLT3_9PHAE (Photosystem I P700 reaction center apoprotein A1 (Fragment) n=1 Tax=Ascoseira mirabilis TaxID=76830 RepID=D4HLT3_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 2.060e-20
Identity = 40/41 (97.56%), Postives = 41/41 (100.00%), Query Frame = 1 
Query:   91 YAMPPYPYIATDYATQLSLFTHHVWIGGFCIVGGAAHGAIF 213
            YAMPPYPYIATDYATQLSLFTHH+WIGGFCIVGGAAHGAIF
Sbjct:  305 YAMPPYPYIATDYATQLSLFTHHIWIGGFCIVGGAAHGAIF 345
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|168009 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YSG3_9STRA1.060e-45100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
B6CWT4_9PHAE5.480e-2197.56PSI P700 chlorophyll a apoprotein A1 (Fragment) n=... [more]
A0A7S2LFM9_9STRA1.420e-2092.68Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
A0A060IBC1_9PHAE1.500e-20100.00Photosystem I P700 chlorophyll a apoprotein A1 (Fr... [more]
A5HW74_9STRA1.650e-20100.00Photosystem I P700 chlorophyll A apoprotein A1 (Fr... [more]
A0A0F6WGP2_9STRA1.680e-20100.00PSI P700 apoprotein A1 (Fragment) n=2 Tax=Bacillar... [more]
B7ZEN0_9STRA1.690e-20100.00Photosystem I P700 chlorophyll a apoprotein A1 (Fr... [more]
A0A0F6YS29_9STRA1.740e-20100.00PSI P700 apoprotein A1 (Fragment) n=3 Tax=Bacillar... [more]
A5HW92_9STRA1.920e-20100.00Photosystem I P700 chlorophyll a apoprotein A1 (Fr... [more]
D4HLT3_9PHAE2.060e-2097.56Photosystem I P700 reaction center apoprotein A1 (... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_54contigContig_54:626241..626465 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|168009|e_gw1.54.238.1
BRITEko00000,ko00001,ko00002,ko00194
KEGG ModuleM00163
KEGG Pathwayko00195,ko01100,map00195,map01100
KEGG koko:K02689,ko:K02690
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0016020,GO:0031976,GO:0031984,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035
Preferred namepsaA
Descriptionchlorophyll binding
COG categoryC
Max annot lvl2759|Eukaryota
EggNOG OGs28JJ8@1|root,2QRYE@2759|Eukaryota
Evalue8.03e-21
Seed ortholog2880.D1J7A3
Hectar predicted targeting categorysignal peptide
TranscriptId168331
TrackFilteredModels1
ProteinId168009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|168009gene_7091Tribonema minus UTEX_B_3156 geneContig_54 626241..626465 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_7091_1exon_7091_1Tribonema minus UTEX_B_3156 exonContig_54 626241..626465 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_7091CDS_7091Tribonema minus UTEX_B_3156 CDSContig_54 626241..626465 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|168009Trimin1|168009|e_gw1.54.238.1Tribonema minus UTEX_B_3156 polypeptideContig_54 626241..626465 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_7091 ID=mRNA_7091|Name=jgi.p|Trimin1|168009|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=225bp|location=Sequence derived from alignment at Contig_54:626241..626465+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAATACAAGTTTACAAAATACAAAATCTCGCTCATTAAGATATCGAAT
TCTTTTAACTGTGAGTTTATTAACCATAGTACGCATTACGTATGCAATGC
CACCGTACCCTTATATTGCAACAGATTATGCTACACAACTTTCTTTATTC
ACTCATCATGTTTGGATTGGTGGATTCTGTATTGTTGGTGGTGCTGCACA
TGGTGCTATATTTACTAATGTATAG
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protein sequence of jgi.p|Trimin1|168009

>Trimin1|168009|e_gw1.54.238.1 ID=Trimin1|168009|e_gw1.54.238.1|Name=jgi.p|Trimin1|168009|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=75bp
MNTSLQNTKSRSLRYRILLTVSLLTIVRITYAMPPYPYIATDYATQLSLF
THHVWIGGFCIVGGAAHGAIFTNV*
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mRNA from alignment at Contig_54:626241..626465+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7091 ID=mRNA_7091|Name=jgi.p|Trimin1|168009|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=225bp|location=Sequence derived from alignment at Contig_54:626241..626465+ (Tribonema minus UTEX_B_3156 )
ATGAATACAAGTTTACAAAATACAAAATCTCGCTCATTAAGATATCGAAT
TCTTTTAACTGTGAGTTTATTAACCATAGTACGCATTACGTATGCAATGC
CACCGTACCCTTATATTGCAACAGATTATGCTACACAACTTTCTTTATTC
ACTCATCATGTTTGGATTGGTGGATTCTGTATTGTTGGTGGTGCTGCACA
TGGTGCTATATTTACTAATGTATAG
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Coding sequence (CDS) from alignment at Contig_54:626241..626465+

>mRNA_7091 ID=mRNA_7091|Name=jgi.p|Trimin1|168009|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=225bp|location=Sequence derived from alignment at Contig_54:626241..626465+ (Tribonema minus UTEX_B_3156 )
ATGAATACAAGTTTACAAAATACAAAATCTCGCTCATTAAGATATCGAAT
TCTTTTAACTGTGAGTTTATTAACCATAGTACGCATTACGTATGCAATGC
CACCGTACCCTTATATTGCAACAGATTATGCTACACAACTTTCTTTATTC
ACTCATCATGTTTGGATTGGTGGATTCTGTATTGTTGGTGGTGCTGCACA
TGGTGCTATATTTACTAATGTATAG
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