mRNA_7084 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|167863
Unique NamemRNA_7084
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|167863 vs. uniprot
Match: A0A835YPM6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPM6_9STRA)

HSP 1 Score: 547 bits (1410), Expect = 7.610e-197
Identity = 274/274 (100.00%), Postives = 274/274 (100.00%), Query Frame = 1 
Query:    1 ITSSDVQLQVSLAFDLDGFLDTFTAVIGVLLQPAFERMLVRFGFKIYCPDMRQVMLDGADQLYGQGVLVDSPWHNTGLLEVAEQLKISNMKQQQALAASERRLKEVEKRKDPTEQLRQMKSDDILVEECVSDAVAQQLHDPTIVIFSRYVYEGKGGDLDGLVCGMYKGKPTVVLVEAMHNMDTHWRKAQDELCCSVQYWEELRALDLDTADKSLLLDYTALRIDECKGHNVMLAFGSLEFSDSTAEEWFNGMMLPWFHVVANSAGKFVASEVSP 822
            ITSSDVQLQVSLAFDLDGFLDTFTAVIGVLLQPAFERMLVRFGFKIYCPDMRQVMLDGADQLYGQGVLVDSPWHNTGLLEVAEQLKISNMKQQQALAASERRLKEVEKRKDPTEQLRQMKSDDILVEECVSDAVAQQLHDPTIVIFSRYVYEGKGGDLDGLVCGMYKGKPTVVLVEAMHNMDTHWRKAQDELCCSVQYWEELRALDLDTADKSLLLDYTALRIDECKGHNVMLAFGSLEFSDSTAEEWFNGMMLPWFHVVANSAGKFVASEVSP
Sbjct:    1 ITSSDVQLQVSLAFDLDGFLDTFTAVIGVLLQPAFERMLVRFGFKIYCPDMRQVMLDGADQLYGQGVLVDSPWHNTGLLEVAEQLKISNMKQQQALAASERRLKEVEKRKDPTEQLRQMKSDDILVEECVSDAVAQQLHDPTIVIFSRYVYEGKGGDLDGLVCGMYKGKPTVVLVEAMHNMDTHWRKAQDELCCSVQYWEELRALDLDTADKSLLLDYTALRIDECKGHNVMLAFGSLEFSDSTAEEWFNGMMLPWFHVVANSAGKFVASEVSP 274
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BLAST of jgi.p|Trimin1|167863 vs. uniprot
Match: A0A7R9VUU9_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9VUU9_9CHLO)

HSP 1 Score: 133 bits (335), Expect = 8.610e-34
Identity = 85/233 (36.48%), Postives = 139/233 (59.66%), Query Frame = 1 
Query:    1 ITSSDVQLQVSLAFDLD------GFLDTFTAVIGVLLQPAFERMLVRFGFKIYCPDMRQVMLD-GADQLYGQGVLVDSPWHNTGLLEVAEQLKISNMKQQQA--------------LAASERRLKEVE--KRKDPTEQLRQMKS----DDILVEECVSDAVAQQLHDPTIVIFSRYVYEGKGGDLDGLVCGMYKGKPTVVLVEAMHNMDTHWRKAQDELCCSVQYWEELRALD 618
            I  S + +   +A DLD      G ++ F A++  +  P  +R+LVR GF+I+ P +++ M +     +Y + V V+ PW + G + ++++L  + ++ Q++                A+E+RL+ VE  +RKDP E+L QM++    D  LVEECVS+AVA  L D  IV  ++Y+++G+ GDLDG+V G+++G+  VVLVEA HNMDT   KA+ EL  +  YW+EL  ++
Sbjct:   60 IRFSGLHMPTPVAIDLDDNRLNAGTVEDFKAMLQAMQAPGLDRLLVRLGFEIFVPHLKEAMAELDMQHVYNERVFVNLPWES-GTMALSKKLSENTLELQKSNXXXXXXXXXXXXXXXATEKRLRVVELLERKDPAEELAQMRAYNDTDAHLVEECVSNAVAAVLDDAVIVHPTKYIFKGRIGDLDGMVVGVWRGQEVVVLVEAKHNMDTCASKARTELLSAGAYWKELAEME 291
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BLAST of jgi.p|Trimin1|167863 vs. uniprot
Match: A0A1Y1IR53_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IR53_KLENI)

HSP 1 Score: 133 bits (334), Expect = 1.900e-32
Identity = 68/151 (45.03%), Postives = 99/151 (65.56%), Query Frame = 1 
Query:  367 DILVEECVSDAVAQQLHDPTIVIFSRYVYEGKGGDLDGLVCGMYKGKPTVVLVEAMHNMDTHWRKAQDELCCSVQYWEELRALDLDTADKSLLLDYTALRIDECKGHNVMLAFGSLEFSDSTAEEWFN--GMMLPWFHVVANSAGKFVASE 813
            D+L+EECVS+AVA  L D  I++  RY ++ + GDLDGLV G   G+P VVL+EA HNMD  ++ A+ EL  ++QYWEEL  +D+   D++ L DY AL+++E K   +  A G L+FS   A++ F   G     F+VV N+ G+F+AS+
Sbjct:  286 DLLIEECVSNAVASILEDSEIIVSLRYKFQARVGDLDGLVRGTIDGQPVVVLIEAKHNMDGQYKAAESELKNALQYWEELLKVDVSDTDEATLADYNALQLEESKRSFICFALGGLKFSKEVAKQHFGWLGHRGRLFYVVPNAEGRFLASK 436
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|167863 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835YPM6_9STRA7.610e-197100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7R9VUU9_9CHLO8.610e-3436.48Hypothetical protein n=1 Tax=Chlamydomonas euryale... [more]
A0A1Y1IR53_KLENI1.900e-3245.03Uncharacterized protein n=1 Tax=Klebsormidium nite... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_54contigContig_54:536119..536943 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|167863|e_gw1.54.15.1
Hectar predicted targeting categoryother localisation
TranscriptId168185
TrackFilteredModels1
ProteinId167863
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|167863gene_7084Tribonema minus UTEX_B_3156 geneContig_54 536119..536943 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_7084_1exon_7084_1Tribonema minus UTEX_B_3156 exonContig_54 536119..536943 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_7084CDS_7084Tribonema minus UTEX_B_3156 CDSContig_54 536119..536943 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|167863Trimin1|167863|e_gw1.54.15.1Tribonema minus UTEX_B_3156 polypeptideContig_54 536119..536943 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_7084 ID=mRNA_7084|Name=jgi.p|Trimin1|167863|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=825bp|location=Sequence derived from alignment at Contig_54:536119..536943+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATCACTAGCAGTGACGTACAGCTTCAGGTCAGTCTGGCATTCGATTTAGA
CGGCTTCTTGGATACCTTCACTGCCGTCATAGGAGTGCTTTTGCAGCCAG
CGTTCGAGCGGATGCTTGTGCGCTTTGGGTTTAAGATTTATTGTCCGGAC
ATGAGGCAAGTCATGTTAGATGGCGCAGATCAGCTGTATGGCCAGGGCGT
TCTTGTTGACTCACCATGGCACAACACTGGCCTGCTCGAAGTTGCTGAGC
AACTCAAGATCAGCAACATGAAACAGCAACAAGCGCTCGCTGCCAGCGAG
AGGAGGTTGAAGGAGGTGGAGAAACGCAAAGACCCGACAGAGCAGCTGAG
GCAGATGAAAAGTGACGACATCTTAGTTGAGGAGTGTGTCAGTGACGCGG
TAGCGCAGCAGCTTCATGACCCCACTATAGTAATTTTCTCTCGGTATGTC
TATGAAGGGAAGGGAGGGGACCTGGACGGCCTCGTGTGCGGGATGTACAA
AGGAAAACCGACCGTCGTACTAGTTGAGGCAATGCACAACATGGACACGC
ATTGGCGCAAAGCTCAAGATGAGCTATGTTGTTCCGTACAGTACTGGGAA
GAGCTACGAGCGTTGGACCTTGACACTGCTGACAAGTCGCTGCTGCTAGA
CTACACAGCCCTGAGGATCGATGAGTGCAAGGGTCACAATGTGATGCTCG
CCTTTGGCAGTTTAGAGTTTTCTGATTCCACTGCAGAGGAGTGGTTCAAC
GGCATGATGCTTCCATGGTTTCATGTGGTAGCCAACTCTGCTGGCAAGTT
TGTTGCGTCTGAAGTGTCACCCTAA
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protein sequence of jgi.p|Trimin1|167863

>Trimin1|167863|e_gw1.54.15.1 ID=Trimin1|167863|e_gw1.54.15.1|Name=jgi.p|Trimin1|167863|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=275bp
ITSSDVQLQVSLAFDLDGFLDTFTAVIGVLLQPAFERMLVRFGFKIYCPD
MRQVMLDGADQLYGQGVLVDSPWHNTGLLEVAEQLKISNMKQQQALAASE
RRLKEVEKRKDPTEQLRQMKSDDILVEECVSDAVAQQLHDPTIVIFSRYV
YEGKGGDLDGLVCGMYKGKPTVVLVEAMHNMDTHWRKAQDELCCSVQYWE
ELRALDLDTADKSLLLDYTALRIDECKGHNVMLAFGSLEFSDSTAEEWFN
GMMLPWFHVVANSAGKFVASEVSP*
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mRNA from alignment at Contig_54:536119..536943+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7084 ID=mRNA_7084|Name=jgi.p|Trimin1|167863|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=825bp|location=Sequence derived from alignment at Contig_54:536119..536943+ (Tribonema minus UTEX_B_3156 )
ATCACTAGCAGTGACGTACAGCTTCAGGTCAGTCTGGCATTCGATTTAGA
CGGCTTCTTGGATACCTTCACTGCCGTCATAGGAGTGCTTTTGCAGCCAG
CGTTCGAGCGGATGCTTGTGCGCTTTGGGTTTAAGATTTATTGTCCGGAC
ATGAGGCAAGTCATGTTAGATGGCGCAGATCAGCTGTATGGCCAGGGCGT
TCTTGTTGACTCACCATGGCACAACACTGGCCTGCTCGAAGTTGCTGAGC
AACTCAAGATCAGCAACATGAAACAGCAACAAGCGCTCGCTGCCAGCGAG
AGGAGGTTGAAGGAGGTGGAGAAACGCAAAGACCCGACAGAGCAGCTGAG
GCAGATGAAAAGTGACGACATCTTAGTTGAGGAGTGTGTCAGTGACGCGG
TAGCGCAGCAGCTTCATGACCCCACTATAGTAATTTTCTCTCGGTATGTC
TATGAAGGGAAGGGAGGGGACCTGGACGGCCTCGTGTGCGGGATGTACAA
AGGAAAACCGACCGTCGTACTAGTTGAGGCAATGCACAACATGGACACGC
ATTGGCGCAAAGCTCAAGATGAGCTATGTTGTTCCGTACAGTACTGGGAA
GAGCTACGAGCGTTGGACCTTGACACTGCTGACAAGTCGCTGCTGCTAGA
CTACACAGCCCTGAGGATCGATGAGTGCAAGGGTCACAATGTGATGCTCG
CCTTTGGCAGTTTAGAGTTTTCTGATTCCACTGCAGAGGAGTGGTTCAAC
GGCATGATGCTTCCATGGTTTCATGTGGTAGCCAACTCTGCTGGCAAGTT
TGTTGCGTCTGAAGTGTCACCCTAA
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Coding sequence (CDS) from alignment at Contig_54:536119..536943+

>mRNA_7084 ID=mRNA_7084|Name=jgi.p|Trimin1|167863|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=825bp|location=Sequence derived from alignment at Contig_54:536119..536943+ (Tribonema minus UTEX_B_3156 )
ATCACTAGCAGTGACGTACAGCTTCAGGTCAGTCTGGCATTCGATTTAGA
CGGCTTCTTGGATACCTTCACTGCCGTCATAGGAGTGCTTTTGCAGCCAG
CGTTCGAGCGGATGCTTGTGCGCTTTGGGTTTAAGATTTATTGTCCGGAC
ATGAGGCAAGTCATGTTAGATGGCGCAGATCAGCTGTATGGCCAGGGCGT
TCTTGTTGACTCACCATGGCACAACACTGGCCTGCTCGAAGTTGCTGAGC
AACTCAAGATCAGCAACATGAAACAGCAACAAGCGCTCGCTGCCAGCGAG
AGGAGGTTGAAGGAGGTGGAGAAACGCAAAGACCCGACAGAGCAGCTGAG
GCAGATGAAAAGTGACGACATCTTAGTTGAGGAGTGTGTCAGTGACGCGG
TAGCGCAGCAGCTTCATGACCCCACTATAGTAATTTTCTCTCGGTATGTC
TATGAAGGGAAGGGAGGGGACCTGGACGGCCTCGTGTGCGGGATGTACAA
AGGAAAACCGACCGTCGTACTAGTTGAGGCAATGCACAACATGGACACGC
ATTGGCGCAAAGCTCAAGATGAGCTATGTTGTTCCGTACAGTACTGGGAA
GAGCTACGAGCGTTGGACCTTGACACTGCTGACAAGTCGCTGCTGCTAGA
CTACACAGCCCTGAGGATCGATGAGTGCAAGGGTCACAATGTGATGCTCG
CCTTTGGCAGTTTAGAGTTTTCTGATTCCACTGCAGAGGAGTGGTTCAAC
GGCATGATGCTTCCATGGTTTCATGTGGTAGCCAACTCTGCTGGCAAGTT
TGTTGCGTCTGAAGTGTCACCCTAA
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