mRNA_7070 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|167836
Unique NamemRNA_7070
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|167836 vs. uniprot
Match: A0A835YTC0_9STRA (GPR1/FUN34/yaaH family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTC0_9STRA)

HSP 1 Score: 193 bits (490), Expect = 2.560e-62
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 1 
Query:    1 MVGTWTAESEDFDTAEALYLSEWTIFTILMFCLSFKECVALRVTFLLTAMSIALLAAGRFDKDVLKAGGYFGLAASVGAAYMATSAIAKENYGFYFYYC 297
            MVGTWTAESEDFDTAEALYLSEWTIFTILMFCLSFKECVALRVTFLLTAMSIALLAAGRFDKDVLKAGGYFGLAASVGAAYMATSAIAKENYGFYFYYC
Sbjct:    1 MVGTWTAESEDFDTAEALYLSEWTIFTILMFCLSFKECVALRVTFLLTAMSIALLAAGRFDKDVLKAGGYFGLAASVGAAYMATSAIAKENYGFYFYYC 99
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BLAST of jgi.p|Trimin1|167836 vs. uniprot
Match: A0A836CCL6_9STRA (GPR1/FUN34/yaaH family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCL6_9STRA)

HSP 1 Score: 176 bits (446), Expect = 1.830e-54
Identity = 88/99 (88.89%), Postives = 95/99 (95.96%), Query Frame = 1 
Query:    1 MVGTWTAESEDFDTAEALYLSEWTIFTILMFCLSFKECVALRVTFLLTAMSIALLAAGRFDKDVLKAGGYFGLAASVGAAYMATSAIAKENYGFYFYYC 297
            +VGTWTAESEDFDTAE +YLSEWTIFTILMFCLSFKECVALRVT LLTA+S+ALLAAGRFD+DVLK GGYFGLAAS GAAY+ATSAIAKENYGFYFY+C
Sbjct:   82 LVGTWTAESEDFDTAEPMYLSEWTIFTILMFCLSFKECVALRVTILLTAISMALLAAGRFDEDVLKVGGYFGLAASAGAAYIATSAIAKENYGFYFYHC 180
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BLAST of jgi.p|Trimin1|167836 vs. uniprot
Match: A0A835ZDQ2_9STRA (GPR1/FUN34/yaaH family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDQ2_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 1.790e-12
Identity = 39/91 (42.86%), Postives = 55/91 (60.44%), Query Frame = 1 
Query:   10 TWTAESEDFDTAEALYLSEWTIFTILMFCLSFKECVALRVTFLLTAMSIALLAAGRFDKDVLKAGGYFGLAASVGAAYMATSAIAKENYGF 282
            T+   +E ++TAEALYL  W +F+ LM  L F +  ALR+TF +  ++  LL  G F +   +AGGY GL  + GAAY A S + +E Y F
Sbjct:  132 TFGPTTEGYETAEALYLGTWGLFSFLMSLLLFGKPWALRLTFYILTLAFFLLVIGEFHEHAKQAGGYVGLVCAAGAAYTAFSEMVEETYHF 222
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|167836 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835YTC0_9STRA2.560e-62100.00GPR1/FUN34/yaaH family-domain-containing protein n... [more]
A0A836CCL6_9STRA1.830e-5488.89GPR1/FUN34/yaaH family-domain-containing protein n... [more]
A0A835ZDQ2_9STRA1.790e-1242.86GPR1/FUN34/yaaH family-domain-containing protein n... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_54contigContig_54:478928..479227 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|167836|e_gw1.54.19.1
BRITEko00000
KEGG koko:K07034
GOsGO:0000322,GO:0000323,GO:0000324,GO:0003674,GO:0005215,GO:0005342,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005773,GO:0005886,GO:0006066,GO:0006067,GO:0006068,GO:0006810,GO:0006811,GO:0006812,GO:0006820,GO:0006846,GO:0006847,GO:0006855,GO:0008028,GO:0008150,GO:0008152,GO:0008324,GO:0008509,GO:0008514,GO:0008519,GO:0009056,GO:0009987,GO:0015075,GO:0015123,GO:0015238,GO:0015318,GO:0015696,GO:0015711,GO:0015718,GO:0015849,GO:0015893,GO:0016020,GO:0016021,GO:0016999,GO:0017001,GO:0017144,GO:0019740,GO:0022857,GO:0031224,GO:0034220,GO:0034308,GO:0034310,GO:0035433,GO:0042221,GO:0042493,GO:0042737,GO:0042891,GO:0042895,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044248,GO:0044281,GO:0044282,GO:0044424,GO:0044425,GO:0044444,GO:0044464,GO:0046164,GO:0046942,GO:0046943,GO:0050896,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071704,GO:0071705,GO:0071944,GO:0072488,GO:0098655,GO:0098656,GO:1901575,GO:1901615,GO:1901616,GO:1903825,GO:1905039
Preferred namemug86
DescriptionAcetate transporter
COG categoryU
Max annot lvl4751|Fungi
EggNOG OGsCOG1584@1|root,2QUJS@2759|Eukaryota,39ZTU@33154|Opisthokonta,3NXGJ@4751|Fungi,3QJWZ@4890|Ascomycota,3MDZ3@451866|Taphrinomycotina
Evalue4.12e-06
Seed ortholog5011.R4X983
Hectar predicted targeting categoryother localisation
TranscriptId168158
TrackFilteredModels1
ProteinId167836
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|167836gene_7070Tribonema minus UTEX_B_3156 geneContig_54 478928..479227 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_7070_1exon_7070_1Tribonema minus UTEX_B_3156 exonContig_54 478928..479227 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_7070CDS_7070Tribonema minus UTEX_B_3156 CDSContig_54 478928..479227 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|167836Trimin1|167836|e_gw1.54.19.1Tribonema minus UTEX_B_3156 polypeptideContig_54 478928..479227 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_7070 ID=mRNA_7070|Name=jgi.p|Trimin1|167836|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=300bp|location=Sequence derived from alignment at Contig_54:478928..479227+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGTAGGCACTTGGACCGCTGAATCGGAAGACTTTGATACGGCAGAAGC
TCTGTACCTCTCAGAGTGGACCATCTTTACAATTCTCATGTTCTGTCTCT
CATTCAAGGAATGTGTAGCGCTTCGAGTTACCTTCCTACTGACTGCCATG
AGCATTGCATTGCTCGCCGCCGGACGCTTTGATAAAGACGTACTGAAAGC
CGGTGGGTATTTCGGTCTGGCAGCATCAGTGGGAGCGGCGTACATGGCAA
CATCTGCAATCGCAAAGGAAAACTACGGGTTCTATTTTTATTACTGTTGA
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protein sequence of jgi.p|Trimin1|167836

>Trimin1|167836|e_gw1.54.19.1 ID=Trimin1|167836|e_gw1.54.19.1|Name=jgi.p|Trimin1|167836|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=100bp
MVGTWTAESEDFDTAEALYLSEWTIFTILMFCLSFKECVALRVTFLLTAM
SIALLAAGRFDKDVLKAGGYFGLAASVGAAYMATSAIAKENYGFYFYYC*
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mRNA from alignment at Contig_54:478928..479227+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7070 ID=mRNA_7070|Name=jgi.p|Trimin1|167836|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=300bp|location=Sequence derived from alignment at Contig_54:478928..479227+ (Tribonema minus UTEX_B_3156 )
ATGGTAGGCACTTGGACCGCTGAATCGGAAGACTTTGATACGGCAGAAGC
TCTGTACCTCTCAGAGTGGACCATCTTTACAATTCTCATGTTCTGTCTCT
CATTCAAGGAATGTGTAGCGCTTCGAGTTACCTTCCTACTGACTGCCATG
AGCATTGCATTGCTCGCCGCCGGACGCTTTGATAAAGACGTACTGAAAGC
CGGTGGGTATTTCGGTCTGGCAGCATCAGTGGGAGCGGCGTACATGGCAA
CATCTGCAATCGCAAAGGAAAACTACGGGTTCTATTTTTATTACTGTTGA
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Coding sequence (CDS) from alignment at Contig_54:478928..479227+

>mRNA_7070 ID=mRNA_7070|Name=jgi.p|Trimin1|167836|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=300bp|location=Sequence derived from alignment at Contig_54:478928..479227+ (Tribonema minus UTEX_B_3156 )
ATGGTAGGCACTTGGACCGCTGAATCGGAAGACTTTGATACGGCAGAAGC
TCTGTACCTCTCAGAGTGGACCATCTTTACAATTCTCATGTTCTGTCTCT
CATTCAAGGAATGTGTAGCGCTTCGAGTTACCTTCCTACTGACTGCCATG
AGCATTGCATTGCTCGCCGCCGGACGCTTTGATAAAGACGTACTGAAAGC
CGGTGGGTATTTCGGTCTGGCAGCATCAGTGGGAGCGGCGTACATGGCAA
CATCTGCAATCGCAAAGGAAAACTACGGGTTCTATTTTTATTACTGTTGA
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