mRNA_7054 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|167877 vs. uniprot
Match: A0A835YXY4_9STRA (HNHc domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXY4_9STRA) HSP 1 Score: 380 bits (975), Expect = 1.700e-133 Identity = 185/185 (100.00%), Postives = 185/185 (100.00%), Query Frame = 1 Query: 1 MAYGCTFSLARSALSGGAEVWRAISPDFIRGATGYCASDTGLVQTPCGSVTRGTLGEHKQYRVVNIMHYEYRVHQLVADAFLPQDSMRAQVNHIDGDKLNNAVSNLERVTASENTMHAVRTGLMSCPPGRSVRRTSLCGTTHDNFDSVHAASRSVGKEGGCANIIACCKGRQVTAYGYRWSYLNV 555 MAYGCTFSLARSALSGGAEVWRAISPDFIRGATGYCASDTGLVQTPCGSVTRGTLGEHKQYRVVNIMHYEYRVHQLVADAFLPQDSMRAQVNHIDGDKLNNAVSNLERVTASENTMHAVRTGLMSCPPGRSVRRTSLCGTTHDNFDSVHAASRSVGKEGGCANIIACCKGRQVTAYGYRWSYLNV Sbjct: 1 MAYGCTFSLARSALSGGAEVWRAISPDFIRGATGYCASDTGLVQTPCGSVTRGTLGEHKQYRVVNIMHYEYRVHQLVADAFLPQDSMRAQVNHIDGDKLNNAVSNLERVTASENTMHAVRTGLMSCPPGRSVRRTSLCGTTHDNFDSVHAASRSVGKEGGCANIIACCKGRQVTAYGYRWSYLNV 185
BLAST of jgi.p|Trimin1|167877 vs. uniprot
Match: A0A836CF53_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF53_9STRA) HSP 1 Score: 228 bits (582), Expect = 2.880e-71 Identity = 119/184 (64.67%), Postives = 138/184 (75.00%), Query Frame = 1 Query: 4 AYGCTFSLARSAL-SGGAEVWRAISPDFIRGATGYCASDTGLVQTPCGSVTRGTLGEHKQYRVVNIMHYEYRVHQLVADAFLPQDSMRAQVNHIDGDKLNNAVSNLERVTASENTMHAVRTGLMSCPPGRSVRRTSLCGTTHDNFDSVHAASRSVGKEGGCANIIACCKGRQVTAYGYRWSYLN 552 AYG TF+ A S L G + VW+AI P I GATGY ASDTGLV+ P G VT+GTLG++K+YRV++I +EYRVH+LVADA LP D R VNHIDGDKLNNA SNLER T SENT HA+RTGLM P G V+RTS CG NFDSV AA+RSVG E G +NI ACC+GRQ TAYGY W+Y + Sbjct: 175 AYGRTFAYATSGLLEGSSHVWKAIPPGRIGGATGYYASDTGLVKLPNGRVTQGTLGQYKEYRVISIQRHEYRVHRLVADAHLPDDPARLVVNHIDGDKLNNAASNLERATHSENTRHAMRTGLMMRPCGVLVKRTSSCGKFTQNFDSVGAAARSVGHEAGRSNITACCQGRQKTAYGYTWTYAD 358
BLAST of jgi.p|Trimin1|167877 vs. uniprot
Match: A0A6C0ADX3_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0ADX3_9ZZZZ) HSP 1 Score: 100 bits (249), Expect = 7.050e-22 Identity = 59/167 (35.33%), Postives = 90/167 (53.89%), Query Frame = 1 Query: 55 EVWRAISPDFIRGATGYCASDTGLVQTPCGSVTRGTLGEHKQ-YRVVNIMHYEYRVHQLVADAFLPQDSMRAQVNHIDGDKLNNAVSNLERVTASENTMHAVRTGLMSCPPGRSVRRTSLCGTTHDNFDSVHAASRSVGKEGGCANIIACCKGRQVTAYGYRWSYLN 552 E+W+ I FI GA G+ AS+ G ++ + ++ + K Y V I +Y+VH+L+A FL + VNH +G K +N + NLE VT SEN+ HAV GL+ C + + + S+ G + FDS+ AS+ +NI CC G+ TA GY W + + Sbjct: 127 EIWKKIPRLFINGAKGFFASNFGRIKNSSSEIFNSSIKDKKDDYVSVGIKGKKYKVHRLIAQTFLDNPENKKFVNHKNGIKNDNRLENLEFVTPSENSRHAVNIGLILC---KKIIQYSVTGVKLNEFDSIIQASKETNVN--ASNICLCCTGKSNTAGGYIWKHYD 288
BLAST of jgi.p|Trimin1|167877 vs. uniprot
Match: UPI001F565441 (NUMOD4 domain-containing protein n=1 Tax=Bacillus cereus group sp. BfR-BA-01315 TaxID=2920292 RepID=UPI001F565441) HSP 1 Score: 93.2 bits (230), Expect = 1.630e-20 Identity = 67/185 (36.22%), Postives = 91/185 (49.19%), Query Frame = 1 Query: 55 EVWRAISPDFIRGATGYC-ASDTGLVQTPCGSVTRGTLGEHKQYRVVNIM----HYEYRVHQLVADAFLPQDSMRAQVNHIDGDKLNNAVSNLERVTASENTMHAVRTGLMS--------------CPPGRSVRRTSLCGTTHDNFDSVHAASRSVGKEGGCANIIACCKGRQVTAYGYRWSYLN 552 E+W+ I G GY S+TG ++ S R Y V ++ ++VH+LVA AF+P + + QVNHIDG+KLNN + NLE VT EN HA GL + V + SL G FDS+ ASR +G+ GG +I ACC G+ TAYGY W ++ Sbjct: 3 EIWK-----DIEGYEGYYQVSNTGKIKNKRNSRIRKNCLTKYGYLNVQLLISGKDKTFQVHRLVAQAFIPNPNNKTQVNHIDGNKLNNNIDNLEWVTPKENMKHAWDIGLYKDSVESIKKNAIKAQLATRKKVAQYSLDGDYIRTFDSMREASRLIGR-GGNGSISACCNGKLKTAYGYVWKKVD 181
BLAST of jgi.p|Trimin1|167877 vs. uniprot
Match: A0A6B7M7H5_9CAUD (Uncharacterized protein n=1 Tax=Xanthomonas phage Xoo-sp15 TaxID=2608370 RepID=A0A6B7M7H5_9CAUD) HSP 1 Score: 89.7 bits (221), Expect = 4.430e-19 Identity = 53/128 (41.41%), Postives = 67/128 (52.34%), Query Frame = 1 Query: 217 VHQLVADAFLPQDSMRAQVNHIDGDKLNNAVSNLERVTASENTMHAVRTGL------------------MSCPPGRSVRRTSLCGTTHDNFDSVHAASRSVGKEGGCANIIACCKGRQVTAYGYRWSY 546 VH+LVA+ F+ + + QVNHIDG+KLNN V NLE T EN HA TGL + R V + SL GT FDS+ A+RS+G NI CC G++ AYGY+W Y Sbjct: 60 VHRLVAETFITNEGNKEQVNHIDGNKLNNCVDNLEWCTREENQQHAWETGLHVHTREVVRNNGKKNIEKFNGEKRRKVVQYSLDGTYIATFDSMRDAARSLGSISKQGNISECCSGKRGKAYGYKWKY 187
BLAST of jgi.p|Trimin1|167877 vs. uniprot
Match: UPI000166BDF8 (NUMOD4 domain-containing protein n=1 Tax=Clostridium botulinum TaxID=1491 RepID=UPI000166BDF8) HSP 1 Score: 86.7 bits (213), Expect = 4.250e-18 Identity = 60/175 (34.29%), Postives = 97/175 (55.43%), Query Frame = 1 Query: 55 EVWRAISPDFIRGATGYCASDTGLV----QTPCGSVTRGTLGEHKQYRVVNIMH-----YEYRVHQLVADAFLPQDSMRAQVNHIDGDKLNNAVSNLERVTASENTMHAVRTGLMSCPPGRSVRRTSLCGTTHDNFDSVHAASRSVGKEGGCANIIACCKGRQVTAYGYRWSYLN 552 E+W+ I D R Y S+ G V + G V +GT+ + Y V + + ++ ++H+LVA+ F+P + QVNHIDG+KLNN ++NLE T ENT+HA +TGL + + V + +L G ++ ++ AS S+GK+ I CC + TAYG+ W +++ Sbjct: 3 EIWKEI--DEFRNI--YYISNLGRVLSFKKIKNGKVMQGTI-DKDGYTQVGLTNKKGKKFKKKIHRLVAEVFIPNPNNLPQVNHIDGNKLNNNINNLEWCTNYENTIHAHKTGLCN-NHYKKVAQYNLNGQFIKSYKTLREASLSLGKKKNDGAISMCCHHKIKTAYGFVWKFVD 171
BLAST of jgi.p|Trimin1|167877 vs. uniprot
Match: A0A4U3AX86_9BACI (HNHc domain-containing protein n=2 Tax=Bacillus cereus group TaxID=86661 RepID=A0A4U3AX86_9BACI) HSP 1 Score: 86.3 bits (212), Expect = 9.230e-18 Identity = 51/136 (37.50%), Postives = 73/136 (53.68%), Query Frame = 1 Query: 187 VVNIMHYEYRVHQLVADAFLPQDSMRAQVNHIDGDKLNNAVSNLERVTASENTMHAVRTGLMSCPPG--------------RSVRRTSLCGTTHDNFDSVHAASRSVGKEGGCANIIACCKGRQVTAYGYRWSYLN 552 ++N ++VH+LVA FL + QVNHI+G+KL+N V NLE T+SEN H+ GL + + + SL G + FD V A + +GK NI +CCKG+ TAYGY+W+Y+N Sbjct: 49 IINKKRKSHKVHRLVAIHFLLNPDNKPQVNHINGNKLDNRVENLEWCTSSENIRHSWNMGLREKSREVSKITVYKAHEANKKKIAQYSLEGELINIFDCVTDAYKHLGKNTTNGNIASCCKGKAKTAYGYKWAYVN 184
BLAST of jgi.p|Trimin1|167877 vs. uniprot
Match: UPI001375F385 (HNH endonuclease n=1 Tax=Pseudomonas stutzeri TaxID=316 RepID=UPI001375F385) HSP 1 Score: 84.3 bits (207), Expect = 3.850e-17 Identity = 66/176 (37.50%), Postives = 83/176 (47.16%), Query Frame = 1 Query: 55 EVWRAISPDFIRGATGYCASD-TGLVQTPCGSVTRGTLGEHKQYRVVNIMHYEYRVHQLVADAFLPQDSMRAQVNHIDGDKLNNAVSNLERVTASENTMHAVRTGLMSCPPGRSVRRTS--------LCGTTHD---NFDSVHAASRSVGKEGGCANIIACCKGRQVTAYGYRWSY 546 E W+ +S ++ G +D TG + P ++ G Y+ +MH VH+LVA+ FLP D R VNHIDGDK NN + NLE T +EN +HAVR+GL R S LC T D F S A R G +I C GRQ TA GY W Y Sbjct: 3 ETWKQVSANYSVSTLGQVRNDKTGRLLRPV-LMSNGYRAVKIPYKGKVLMH---TVHRLVAENFLPIDPARLHVNHIDGDKQNNRLENLEWCTQAENNLHAVRSGLNKSTLTSVERMNSATRKPVEQLCLRTGDVLARFPSCMEARRVTG----ITSIHDCISGRQSTAGGYGWRY 170
BLAST of jgi.p|Trimin1|167877 vs. uniprot
Match: UPI000BFD3BF6 (NUMOD4 domain-containing protein n=1 Tax=Bacillus thuringiensis TaxID=1428 RepID=UPI000BFD3BF6) HSP 1 Score: 84.0 bits (206), Expect = 6.050e-17 Identity = 53/128 (41.41%), Postives = 70/128 (54.69%), Query Frame = 1 Query: 181 YRVVNIM----HYEYRVHQLVADAFLPQDSMRAQVNHIDGDKLNNAVSNLERVTASENTMHAVRTGLMSCPPGRSVRRTSLCGTTHDNFDSVHAASRSVGKEGGCANIIACCKGRQVTAYGYRWSYLN 552 Y +VNI ++VH+LVA AFL + +VNH +GDK +N V NLE VT EN H+ R GL P +S+ SL G F S AS+ + K G I + C GR+ TAYGY+W Y + Sbjct: 54 YGMVNIYIKGTKKNFKVHRLVASAFLYRKQSATEVNHKNGDKQDNRVPNLEWVTREENMDHSFREGLQP-KPRKSIHMLSLRGDHIKTFSSASEASKHLRKSLG--GISSACNGRRKTAYGYKWKYAS 178
BLAST of jgi.p|Trimin1|167877 vs. uniprot
Match: UPI0006B40E82 (NUMOD4 motif-containing HNH endonuclease n=1 Tax=Kallipyga gabonensis TaxID=1686287 RepID=UPI0006B40E82) HSP 1 Score: 84.0 bits (206), Expect = 6.320e-17 Identity = 46/114 (40.35%), Postives = 69/114 (60.53%), Query Frame = 1 Query: 217 VHQLVADAFLPQDSMRAQVNHIDGDKLNNAVSNLERVTASENTMHAVRTGLMS---CPPGRSVRRTSLCGTTHDNFDSVHAASRSVGKEGGCANIIACCKGRQVTAYGYRWSYL 549 +H+LVA+ F+P + QVNH DGD++NN+V NLE T SEN+ HA +TGL C P R + + + G + + S+ A+R + +G I AC KGR ++ G+RW Y+ Sbjct: 76 IHRLVAETFIPNPDGKPQVNHKDGDRMNNSVENLEWCTCSENSKHAYKTGLSKPKGCKPIRGINKKT--GAVVE-YQSIEEAAREL--KGNANAIRACLKGRSASSCGFRWEYI 184 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|167877 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_7054 ID=mRNA_7054|Name=jgi.p|Trimin1|167877|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=558bp|location=Sequence derived from alignment at Contig_54:312807..313364+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGGCGTACGGGTGCACCTTCTCCTTAGCCCGCAGCGCTTTGTCCGGAGGback to top protein sequence of jgi.p|Trimin1|167877 >Trimin1|167877|e_gw1.54.130.1 ID=Trimin1|167877|e_gw1.54.130.1|Name=jgi.p|Trimin1|167877|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=186bp MAYGCTFSLARSALSGGAEVWRAISPDFIRGATGYCASDTGLVQTPCGSVback to top mRNA from alignment at Contig_54:312807..313364+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_7054 ID=mRNA_7054|Name=jgi.p|Trimin1|167877|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=558bp|location=Sequence derived from alignment at Contig_54:312807..313364+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_54:312807..313364+ >mRNA_7054 ID=mRNA_7054|Name=jgi.p|Trimin1|167877|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=558bp|location=Sequence derived from alignment at Contig_54:312807..313364+ (Tribonema minus UTEX_B_3156 )back to top |