mRNA_7054 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|167877
Unique NamemRNA_7054
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|167877 vs. uniprot
Match: A0A835YXY4_9STRA (HNHc domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXY4_9STRA)

HSP 1 Score: 380 bits (975), Expect = 1.700e-133
Identity = 185/185 (100.00%), Postives = 185/185 (100.00%), Query Frame = 1
Query:    1 MAYGCTFSLARSALSGGAEVWRAISPDFIRGATGYCASDTGLVQTPCGSVTRGTLGEHKQYRVVNIMHYEYRVHQLVADAFLPQDSMRAQVNHIDGDKLNNAVSNLERVTASENTMHAVRTGLMSCPPGRSVRRTSLCGTTHDNFDSVHAASRSVGKEGGCANIIACCKGRQVTAYGYRWSYLNV 555
            MAYGCTFSLARSALSGGAEVWRAISPDFIRGATGYCASDTGLVQTPCGSVTRGTLGEHKQYRVVNIMHYEYRVHQLVADAFLPQDSMRAQVNHIDGDKLNNAVSNLERVTASENTMHAVRTGLMSCPPGRSVRRTSLCGTTHDNFDSVHAASRSVGKEGGCANIIACCKGRQVTAYGYRWSYLNV
Sbjct:    1 MAYGCTFSLARSALSGGAEVWRAISPDFIRGATGYCASDTGLVQTPCGSVTRGTLGEHKQYRVVNIMHYEYRVHQLVADAFLPQDSMRAQVNHIDGDKLNNAVSNLERVTASENTMHAVRTGLMSCPPGRSVRRTSLCGTTHDNFDSVHAASRSVGKEGGCANIIACCKGRQVTAYGYRWSYLNV 185          
BLAST of jgi.p|Trimin1|167877 vs. uniprot
Match: A0A836CF53_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF53_9STRA)

HSP 1 Score: 228 bits (582), Expect = 2.880e-71
Identity = 119/184 (64.67%), Postives = 138/184 (75.00%), Query Frame = 1
Query:    4 AYGCTFSLARSAL-SGGAEVWRAISPDFIRGATGYCASDTGLVQTPCGSVTRGTLGEHKQYRVVNIMHYEYRVHQLVADAFLPQDSMRAQVNHIDGDKLNNAVSNLERVTASENTMHAVRTGLMSCPPGRSVRRTSLCGTTHDNFDSVHAASRSVGKEGGCANIIACCKGRQVTAYGYRWSYLN 552
            AYG TF+ A S L  G + VW+AI P  I GATGY ASDTGLV+ P G VT+GTLG++K+YRV++I  +EYRVH+LVADA LP D  R  VNHIDGDKLNNA SNLER T SENT HA+RTGLM  P G  V+RTS CG    NFDSV AA+RSVG E G +NI ACC+GRQ TAYGY W+Y +
Sbjct:  175 AYGRTFAYATSGLLEGSSHVWKAIPPGRIGGATGYYASDTGLVKLPNGRVTQGTLGQYKEYRVISIQRHEYRVHRLVADAHLPDDPARLVVNHIDGDKLNNAASNLERATHSENTRHAMRTGLMMRPCGVLVKRTSSCGKFTQNFDSVGAAARSVGHEAGRSNITACCQGRQKTAYGYTWTYAD 358          
BLAST of jgi.p|Trimin1|167877 vs. uniprot
Match: A0A6C0ADX3_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0ADX3_9ZZZZ)

HSP 1 Score: 100 bits (249), Expect = 7.050e-22
Identity = 59/167 (35.33%), Postives = 90/167 (53.89%), Query Frame = 1
Query:   55 EVWRAISPDFIRGATGYCASDTGLVQTPCGSVTRGTLGEHKQ-YRVVNIMHYEYRVHQLVADAFLPQDSMRAQVNHIDGDKLNNAVSNLERVTASENTMHAVRTGLMSCPPGRSVRRTSLCGTTHDNFDSVHAASRSVGKEGGCANIIACCKGRQVTAYGYRWSYLN 552
            E+W+ I   FI GA G+ AS+ G ++     +   ++ + K  Y  V I   +Y+VH+L+A  FL     +  VNH +G K +N + NLE VT SEN+ HAV  GL+ C   + + + S+ G   + FDS+  AS+        +NI  CC G+  TA GY W + +
Sbjct:  127 EIWKKIPRLFINGAKGFFASNFGRIKNSSSEIFNSSIKDKKDDYVSVGIKGKKYKVHRLIAQTFLDNPENKKFVNHKNGIKNDNRLENLEFVTPSENSRHAVNIGLILC---KKIIQYSVTGVKLNEFDSIIQASKETNVN--ASNICLCCTGKSNTAGGYIWKHYD 288          
BLAST of jgi.p|Trimin1|167877 vs. uniprot
Match: UPI001F565441 (NUMOD4 domain-containing protein n=1 Tax=Bacillus cereus group sp. BfR-BA-01315 TaxID=2920292 RepID=UPI001F565441)

HSP 1 Score: 93.2 bits (230), Expect = 1.630e-20
Identity = 67/185 (36.22%), Postives = 91/185 (49.19%), Query Frame = 1
Query:   55 EVWRAISPDFIRGATGYC-ASDTGLVQTPCGSVTRGTLGEHKQYRVVNIM----HYEYRVHQLVADAFLPQDSMRAQVNHIDGDKLNNAVSNLERVTASENTMHAVRTGLMS--------------CPPGRSVRRTSLCGTTHDNFDSVHAASRSVGKEGGCANIIACCKGRQVTAYGYRWSYLN 552
            E+W+      I G  GY   S+TG ++    S  R        Y  V ++       ++VH+LVA AF+P  + + QVNHIDG+KLNN + NLE VT  EN  HA   GL                    + V + SL G     FDS+  ASR +G+ GG  +I ACC G+  TAYGY W  ++
Sbjct:    3 EIWK-----DIEGYEGYYQVSNTGKIKNKRNSRIRKNCLTKYGYLNVQLLISGKDKTFQVHRLVAQAFIPNPNNKTQVNHIDGNKLNNNIDNLEWVTPKENMKHAWDIGLYKDSVESIKKNAIKAQLATRKKVAQYSLDGDYIRTFDSMREASRLIGR-GGNGSISACCNGKLKTAYGYVWKKVD 181          
BLAST of jgi.p|Trimin1|167877 vs. uniprot
Match: A0A6B7M7H5_9CAUD (Uncharacterized protein n=1 Tax=Xanthomonas phage Xoo-sp15 TaxID=2608370 RepID=A0A6B7M7H5_9CAUD)

HSP 1 Score: 89.7 bits (221), Expect = 4.430e-19
Identity = 53/128 (41.41%), Postives = 67/128 (52.34%), Query Frame = 1
Query:  217 VHQLVADAFLPQDSMRAQVNHIDGDKLNNAVSNLERVTASENTMHAVRTGL------------------MSCPPGRSVRRTSLCGTTHDNFDSVHAASRSVGKEGGCANIIACCKGRQVTAYGYRWSY 546
            VH+LVA+ F+  +  + QVNHIDG+KLNN V NLE  T  EN  HA  TGL                   +    R V + SL GT    FDS+  A+RS+G      NI  CC G++  AYGY+W Y
Sbjct:   60 VHRLVAETFITNEGNKEQVNHIDGNKLNNCVDNLEWCTREENQQHAWETGLHVHTREVVRNNGKKNIEKFNGEKRRKVVQYSLDGTYIATFDSMRDAARSLGSISKQGNISECCSGKRGKAYGYKWKY 187          
BLAST of jgi.p|Trimin1|167877 vs. uniprot
Match: UPI000166BDF8 (NUMOD4 domain-containing protein n=1 Tax=Clostridium botulinum TaxID=1491 RepID=UPI000166BDF8)

HSP 1 Score: 86.7 bits (213), Expect = 4.250e-18
Identity = 60/175 (34.29%), Postives = 97/175 (55.43%), Query Frame = 1
Query:   55 EVWRAISPDFIRGATGYCASDTGLV----QTPCGSVTRGTLGEHKQYRVVNIMH-----YEYRVHQLVADAFLPQDSMRAQVNHIDGDKLNNAVSNLERVTASENTMHAVRTGLMSCPPGRSVRRTSLCGTTHDNFDSVHAASRSVGKEGGCANIIACCKGRQVTAYGYRWSYLN 552
            E+W+ I  D  R    Y  S+ G V    +   G V +GT+ +   Y  V + +     ++ ++H+LVA+ F+P  +   QVNHIDG+KLNN ++NLE  T  ENT+HA +TGL +    + V + +L G    ++ ++  AS S+GK+     I  CC  +  TAYG+ W +++
Sbjct:    3 EIWKEI--DEFRNI--YYISNLGRVLSFKKIKNGKVMQGTI-DKDGYTQVGLTNKKGKKFKKKIHRLVAEVFIPNPNNLPQVNHIDGNKLNNNINNLEWCTNYENTIHAHKTGLCN-NHYKKVAQYNLNGQFIKSYKTLREASLSLGKKKNDGAISMCCHHKIKTAYGFVWKFVD 171          
BLAST of jgi.p|Trimin1|167877 vs. uniprot
Match: A0A4U3AX86_9BACI (HNHc domain-containing protein n=2 Tax=Bacillus cereus group TaxID=86661 RepID=A0A4U3AX86_9BACI)

HSP 1 Score: 86.3 bits (212), Expect = 9.230e-18
Identity = 51/136 (37.50%), Postives = 73/136 (53.68%), Query Frame = 1
Query:  187 VVNIMHYEYRVHQLVADAFLPQDSMRAQVNHIDGDKLNNAVSNLERVTASENTMHAVRTGLMSCPPG--------------RSVRRTSLCGTTHDNFDSVHAASRSVGKEGGCANIIACCKGRQVTAYGYRWSYLN 552
            ++N     ++VH+LVA  FL     + QVNHI+G+KL+N V NLE  T+SEN  H+   GL                    + + + SL G   + FD V  A + +GK     NI +CCKG+  TAYGY+W+Y+N
Sbjct:   49 IINKKRKSHKVHRLVAIHFLLNPDNKPQVNHINGNKLDNRVENLEWCTSSENIRHSWNMGLREKSREVSKITVYKAHEANKKKIAQYSLEGELINIFDCVTDAYKHLGKNTTNGNIASCCKGKAKTAYGYKWAYVN 184          
BLAST of jgi.p|Trimin1|167877 vs. uniprot
Match: UPI001375F385 (HNH endonuclease n=1 Tax=Pseudomonas stutzeri TaxID=316 RepID=UPI001375F385)

HSP 1 Score: 84.3 bits (207), Expect = 3.850e-17
Identity = 66/176 (37.50%), Postives = 83/176 (47.16%), Query Frame = 1
Query:   55 EVWRAISPDFIRGATGYCASD-TGLVQTPCGSVTRGTLGEHKQYRVVNIMHYEYRVHQLVADAFLPQDSMRAQVNHIDGDKLNNAVSNLERVTASENTMHAVRTGLMSCPPGRSVRRTS--------LCGTTHD---NFDSVHAASRSVGKEGGCANIIACCKGRQVTAYGYRWSY 546
            E W+ +S ++     G   +D TG +  P   ++ G       Y+   +MH    VH+LVA+ FLP D  R  VNHIDGDK NN + NLE  T +EN +HAVR+GL         R  S        LC  T D    F S   A R  G      +I  C  GRQ TA GY W Y
Sbjct:    3 ETWKQVSANYSVSTLGQVRNDKTGRLLRPV-LMSNGYRAVKIPYKGKVLMH---TVHRLVAENFLPIDPARLHVNHIDGDKQNNRLENLEWCTQAENNLHAVRSGLNKSTLTSVERMNSATRKPVEQLCLRTGDVLARFPSCMEARRVTG----ITSIHDCISGRQSTAGGYGWRY 170          
BLAST of jgi.p|Trimin1|167877 vs. uniprot
Match: UPI000BFD3BF6 (NUMOD4 domain-containing protein n=1 Tax=Bacillus thuringiensis TaxID=1428 RepID=UPI000BFD3BF6)

HSP 1 Score: 84.0 bits (206), Expect = 6.050e-17
Identity = 53/128 (41.41%), Postives = 70/128 (54.69%), Query Frame = 1
Query:  181 YRVVNIM----HYEYRVHQLVADAFLPQDSMRAQVNHIDGDKLNNAVSNLERVTASENTMHAVRTGLMSCPPGRSVRRTSLCGTTHDNFDSVHAASRSVGKEGGCANIIACCKGRQVTAYGYRWSYLN 552
            Y +VNI        ++VH+LVA AFL +     +VNH +GDK +N V NLE VT  EN  H+ R GL    P +S+   SL G     F S   AS+ + K  G   I + C GR+ TAYGY+W Y +
Sbjct:   54 YGMVNIYIKGTKKNFKVHRLVASAFLYRKQSATEVNHKNGDKQDNRVPNLEWVTREENMDHSFREGLQP-KPRKSIHMLSLRGDHIKTFSSASEASKHLRKSLG--GISSACNGRRKTAYGYKWKYAS 178          
BLAST of jgi.p|Trimin1|167877 vs. uniprot
Match: UPI0006B40E82 (NUMOD4 motif-containing HNH endonuclease n=1 Tax=Kallipyga gabonensis TaxID=1686287 RepID=UPI0006B40E82)

HSP 1 Score: 84.0 bits (206), Expect = 6.320e-17
Identity = 46/114 (40.35%), Postives = 69/114 (60.53%), Query Frame = 1
Query:  217 VHQLVADAFLPQDSMRAQVNHIDGDKLNNAVSNLERVTASENTMHAVRTGLMS---CPPGRSVRRTSLCGTTHDNFDSVHAASRSVGKEGGCANIIACCKGRQVTAYGYRWSYL 549
            +H+LVA+ F+P    + QVNH DGD++NN+V NLE  T SEN+ HA +TGL     C P R + + +  G   + + S+  A+R +  +G    I AC KGR  ++ G+RW Y+
Sbjct:   76 IHRLVAETFIPNPDGKPQVNHKDGDRMNNSVENLEWCTCSENSKHAYKTGLSKPKGCKPIRGINKKT--GAVVE-YQSIEEAAREL--KGNANAIRACLKGRSASSCGFRWEYI 184          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|167877 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YXY4_9STRA1.700e-133100.00HNHc domain-containing protein n=1 Tax=Tribonema m... [more]
A0A836CF53_9STRA2.880e-7164.67Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6C0ADX3_9ZZZZ7.050e-2235.33Uncharacterized protein n=1 Tax=viral metagenome T... [more]
UPI001F5654411.630e-2036.22NUMOD4 domain-containing protein n=1 Tax=Bacillus ... [more]
A0A6B7M7H5_9CAUD4.430e-1941.41Uncharacterized protein n=1 Tax=Xanthomonas phage ... [more]
UPI000166BDF84.250e-1834.29NUMOD4 domain-containing protein n=1 Tax=Clostridi... [more]
A0A4U3AX86_9BACI9.230e-1837.50HNHc domain-containing protein n=2 Tax=Bacillus ce... [more]
UPI001375F3853.850e-1737.50HNH endonuclease n=1 Tax=Pseudomonas stutzeri TaxI... [more]
UPI000BFD3BF66.050e-1741.41NUMOD4 domain-containing protein n=1 Tax=Bacillus ... [more]
UPI0006B40E826.320e-1740.35NUMOD4 motif-containing HNH endonuclease n=1 Tax=K... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_54contigContig_54:312807..313364 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|167877|e_gw1.54.130.1
DescriptionHNH endonuclease
COG categoryS
Max annot lvl10699|Siphoviridae
EggNOG OGs4QAIU@10239|Viruses,4QUQC@35237|dsDNA viruses no RNA stage,4QPDE@28883|Caudovirales,4QKM7@10699|Siphoviridae
Evalue1.11e-17
Seed ortholog767806.D7PQ37_9CAUD
Hectar predicted targeting categoryother localisation
TranscriptId168199
TrackFilteredModels1
ProteinId167877
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|167877gene_7054Tribonema minus UTEX_B_3156 geneContig_54 312807..313364 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_7054_1exon_7054_1Tribonema minus UTEX_B_3156 exonContig_54 312807..313364 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_7054CDS_7054Tribonema minus UTEX_B_3156 CDSContig_54 312807..313364 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|167877Trimin1|167877|e_gw1.54.130.1Tribonema minus UTEX_B_3156 polypeptideContig_54 312807..313364 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_7054 ID=mRNA_7054|Name=jgi.p|Trimin1|167877|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=558bp|location=Sequence derived from alignment at Contig_54:312807..313364+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTACGGGTGCACCTTCTCCTTAGCCCGCAGCGCTTTGTCCGGAGG
TGCCGAAGTGTGGAGGGCGATCTCACCAGACTTTATTCGAGGGGCGACGG
GATACTGCGCTTCAGACACCGGGCTCGTGCAAACCCCGTGCGGCTCCGTC
ACCAGAGGAACGTTAGGCGAGCACAAGCAGTACCGTGTCGTCAACATCAT
GCATTACGAGTATCGTGTACATCAGTTAGTGGCTGATGCCTTTCTGCCTC
AGGACTCGATGAGAGCTCAAGTCAACCATATCGATGGAGACAAACTCAAC
AACGCCGTGTCCAATCTGGAGCGAGTCACGGCTTCGGAGAACACCATGCA
CGCCGTTCGCACCGGTCTCATGTCATGCCCGCCCGGGCGGTCCGTGAGGC
GCACATCTTTGTGCGGCACAACTCATGACAACTTCGACAGCGTCCATGCG
GCTTCGCGCAGTGTGGGCAAAGAAGGGGGATGCGCGAACATCATTGCGTG
CTGCAAGGGCAGACAAGTGACTGCGTACGGGTACCGGTGGAGCTACCTTA
ACGTTTAA
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protein sequence of jgi.p|Trimin1|167877

>Trimin1|167877|e_gw1.54.130.1 ID=Trimin1|167877|e_gw1.54.130.1|Name=jgi.p|Trimin1|167877|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=186bp
MAYGCTFSLARSALSGGAEVWRAISPDFIRGATGYCASDTGLVQTPCGSV
TRGTLGEHKQYRVVNIMHYEYRVHQLVADAFLPQDSMRAQVNHIDGDKLN
NAVSNLERVTASENTMHAVRTGLMSCPPGRSVRRTSLCGTTHDNFDSVHA
ASRSVGKEGGCANIIACCKGRQVTAYGYRWSYLNV*
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mRNA from alignment at Contig_54:312807..313364+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7054 ID=mRNA_7054|Name=jgi.p|Trimin1|167877|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=558bp|location=Sequence derived from alignment at Contig_54:312807..313364+ (Tribonema minus UTEX_B_3156 )
ATGGCGTACGGGTGCACCTTCTCCTTAGCCCGCAGCGCTTTGTCCGGAGG TGCCGAAGTGTGGAGGGCGATCTCACCAGACTTTATTCGAGGGGCGACGG GATACTGCGCTTCAGACACCGGGCTCGTGCAAACCCCGTGCGGCTCCGTC ACCAGAGGAACGTTAGGCGAGCACAAGCAGTACCGTGTCGTCAACATCAT GCATTACGAGTATCGTGTACATCAGTTAGTGGCTGATGCCTTTCTGCCTC AGGACTCGATGAGAGCTCAAGTCAACCATATCGATGGAGACAAACTCAAC AACGCCGTGTCCAATCTGGAGCGAGTCACGGCTTCGGAGAACACCATGCA CGCCGTTCGCACCGGTCTCATGTCATGCCCGCCCGGGCGGTCCGTGAGGC GCACATCTTTGTGCGGCACAACTCATGACAACTTCGACAGCGTCCATGCG GCTTCGCGCAGTGTGGGCAAAGAAGGGGGATGCGCGAACATCATTGCGTG CTGCAAGGGCAGACAAGTGACTGCGTACGGGTACCGGTGGAGCTACCTTA ACGTTTAA
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Coding sequence (CDS) from alignment at Contig_54:312807..313364+

>mRNA_7054 ID=mRNA_7054|Name=jgi.p|Trimin1|167877|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=558bp|location=Sequence derived from alignment at Contig_54:312807..313364+ (Tribonema minus UTEX_B_3156 )
ATGGCGTACGGGTGCACCTTCTCCTTAGCCCGCAGCGCTTTGTCCGGAGG
TGCCGAAGTGTGGAGGGCGATCTCACCAGACTTTATTCGAGGGGCGACGG
GATACTGCGCTTCAGACACCGGGCTCGTGCAAACCCCGTGCGGCTCCGTC
ACCAGAGGAACGTTAGGCGAGCACAAGCAGTACCGTGTCGTCAACATCAT
GCATTACGAGTATCGTGTACATCAGTTAGTGGCTGATGCCTTTCTGCCTC
AGGACTCGATGAGAGCTCAAGTCAACCATATCGATGGAGACAAACTCAAC
AACGCCGTGTCCAATCTGGAGCGAGTCACGGCTTCGGAGAACACCATGCA
CGCCGTTCGCACCGGTCTCATGTCATGCCCGCCCGGGCGGTCCGTGAGGC
GCACATCTTTGTGCGGCACAACTCATGACAACTTCGACAGCGTCCATGCG
GCTTCGCGCAGTGTGGGCAAAGAAGGGGGATGCGCGAACATCATTGCGTG
CTGCAAGGGCAGACAAGTGACTGCGTACGGGTACCGGTGGAGCTACCTTA
ACGTTTAA
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