mRNA_703 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|156957
Unique NamemRNA_703
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|156957 vs. uniprot
Match: A0A835ZCC1_9STRA (Deoxyuridine 5'-triphosphate nucleotidohydrolase n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCC1_9STRA)

HSP 1 Score: 249 bits (635), Expect = 1.320e-83
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 1 
Query:    1 MLNVQRLSENATLPTRAHNAVGFDLYSAHSAVIPAHNNALVETDLSMQVPESAYGRITNKRRLGLKNKLEVYAGIVDGTHTGNVGVVLFNHADEDVTVNKGDCIAQLILEQVVIAQIKEGNNVYA 375
            MLNVQRLSENATLPTRAHNAVGFDLYSAHSAVIPAHNNALVETDLSMQVPESAYGRITNKRRLGLKNKLEVYAGIVDGTHTGNVGVVLFNHADEDVTVNKGDCIAQLILEQVVIAQIKEGNNVYA
Sbjct:    1 MLNVQRLSENATLPTRAHNAVGFDLYSAHSAVIPAHNNALVETDLSMQVPESAYGRITNKRRLGLKNKLEVYAGIVDGTHTGNVGVVLFNHADEDVTVNKGDCIAQLILEQVVIAQIKEGNNVYA 125
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BLAST of jgi.p|Trimin1|156957 vs. uniprot
Match: A0A835YZ59_9STRA (Deoxyuridine 5'-triphosphate nucleotidohydrolase n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ59_9STRA)

HSP 1 Score: 135 bits (340), Expect = 1.130e-38
Identity = 66/126 (52.38%), Postives = 92/126 (73.02%), Query Frame = 1 
Query:    1 MLNVQRLSENATLPTR-AHNAVGFDLYSAHSAVIPAHNNALVETDLSMQVPESAYGRITNKRRLGLKNKLEVYAGIVDGTHTGNVGVVLFNHADEDVTVNKGDCIAQLILEQVVIAQIKEGNNVYA 375
            M+ V+RLS NA LPT+ A ++V   LYSAH   +P+H  ALV+TDL M+VP S +GRI NK  L + N+++VY+ I++  H+GNVGVVL+NH D D  V  G C+AQL++EQ VI Q++EG+ VY+
Sbjct:    1 MIKVRRLSSNAKLPTKKASDSVCLQLYSAHDVTVPSHGKALVQTDLEMEVPFSTFGRIVNKPGLSVDNEIDVYSPIIE--HSGNVGVVLYNHGDNDFIVATGGCVAQLVVEQAVIVQVREGSCVYS 124
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BLAST of jgi.p|Trimin1|156957 vs. uniprot
Match: A0A835YWU8_9STRA (dUTPase domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWU8_9STRA)

HSP 1 Score: 142 bits (357), Expect = 1.080e-37
Identity = 69/106 (65.09%), Postives = 84/106 (79.25%), Query Frame = 1 
Query:    7 NVQRLSENATLPTRAHNAVGFDLYSAHSAVIPAHNNALVETDLSMQVPESAYGRITNKRRLGLKNKLEVYAGIVDGTHTGNVGVVLFNHADEDVTVNKGDCIAQLI 324
            NV+RLS  ATLPTRA  AVG DLYSAH AVI AH+NAL+ TDL +QVPE+ YGR+T +R L LKNKLEVYAG+VD  +  +V +VLFNH+D D  + +GDC+AQLI
Sbjct:  268 NVKRLSSRATLPTRAVGAVGADLYSAHDAVIAAHDNALIHTDLRIQVPENTYGRVTAQRHLPLKNKLEVYAGVVDAGNCDDVCIVLFNHSDADYVLKQGDCVAQLI 373
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BLAST of jgi.p|Trimin1|156957 vs. uniprot
Match: A0A835ZE92_9STRA (Deoxyuridine 5'-triphosphate nucleotidohydrolase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE92_9STRA)

HSP 1 Score: 123 bits (309), Expect = 5.820e-34
Identity = 60/120 (50.00%), Postives = 85/120 (70.83%), Query Frame = 1 
Query:    1 MLNVQRLSENATLPTR-AHNAVGFDLYSAHSAVIPAHNNALVETDLSMQVPESAYGRITNKRRLGLKNKLEVYAGIVDGTHTGNVGVVLFNHADEDVTVNKGDCIAQLILEQVVIAQIKE 357
            ML V+RLS NA  PT+    +V   LYSAH+  +PAH+ ALV+TDL +++P S YGRI NK  L + N+++VY+ I++  ++ NVG+V++NH   D  V +GDCIAQLI+ Q VIA I+E
Sbjct:    1 MLTVRRLSVNAQPPTKKTPTSVCLQLYSAHNVTVPAHDKALVQTDLEIELPVSTYGRIVNKPGLSVDNEMDVYSPIIEAQNSSNVGIVIYNHGSSDFQVVRGDCIAQLIVHQAVIAHIQE 120
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BLAST of jgi.p|Trimin1|156957 vs. uniprot
Match: A0A0L0GAG4_9EUKA (Deoxyuridine 5'-triphosphate nucleotidohydrolase n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0GAG4_9EUKA)

HSP 1 Score: 124 bits (311), Expect = 1.140e-33
Identity = 59/119 (49.58%), Postives = 86/119 (72.27%), Query Frame = 1 
Query:    4 LNVQRLSENATLPTRAHN-AVGFDLYSAHSAVIPAHNNALVETDLSMQVPESAYGRITNKRRLGLKNKLEVYAGIVDGTHTGNVGVVLFNHADEDVTVNKGDCIAQLILEQVVIAQIKE 357
            + V++LS++AT+P +    A GFDL+SAH  VIPA   A+++TD+S+ +P   YGR+  +  L  K+ ++V AG++DG + GNVGVVLFNHA  D  V KGD +AQLILE+ V+A+I+E
Sbjct:   33 MQVKKLSDDATIPVKGSALAAGFDLFSAHDGVIPAQGKAIMKTDISIAIPAGCYGRVAPRSGLSWKHHIDVGAGVIDGDYRGNVGVVLFNHAQTDYNVAKGDRVAQLILEKYVVAEIEE 151
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BLAST of jgi.p|Trimin1|156957 vs. uniprot
Match: A0A2R5GQR2_9STRA (Deoxyuridine 5'-triphosphate nucleotidohydrolase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GQR2_9STRA)

HSP 1 Score: 125 bits (314), Expect = 2.810e-33
Identity = 65/120 (54.17%), Postives = 84/120 (70.00%), Query Frame = 1 
Query:    1 MLNVQRLSENATLPTRAH-NAVGFDLYSAHSAVIPAHNNALVETDLSMQVPESAYGRITNKRRLGLKNKLEVYAGIVDGTHTGNVGVVLFNHADEDVTVNKGDCIAQLILEQVVIAQIKE 357
            M+ V +LSE AT+PTR    A G DLY+AH AVIPA    LV+TDL+MQVP   YGR+  +  L  K  ++V AG++D  + GNVGVVLFNHA ED+ V  GD IAQL+LE+V +A ++E
Sbjct:   12 MVLVSKLSEKATVPTRGSAEAAGLDLYAAHDAVIPAAGKGLVKTDLAMQVPLGTYGRVAPRSGLAWKKHVDVGAGVIDRDYRGNVGVVLFNHAQEDLEVKVGDRIAQLVLEKVSMAPVRE 131
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BLAST of jgi.p|Trimin1|156957 vs. uniprot
Match: A4S9G9_OSTLU (Deoxyuridine 5'-triphosphate nucleotidohydrolase n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4S9G9_OSTLU)

HSP 1 Score: 120 bits (302), Expect = 1.660e-32
Identity = 60/119 (50.42%), Postives = 82/119 (68.91%), Query Frame = 1 
Query:    4 LNVQRLSENATLPTR-AHNAVGFDLYSAHSAVIPAHNNALVETDLSMQVPESAYGRITNKRRLGLKNKLEVYAGIVDGTHTGNVGVVLFNHADEDVTVNKGDCIAQLILEQVVIAQIKE 357
            L V+RLS++AT+PTR +  A G+DL SAH  V+PA    LV+TDLS+ +P   Y R+  +  L  K  ++V AG+VD  + GNVGV+LFNH DED  V KGD +AQLILEQ++  ++ E
Sbjct:    6 LRVKRLSDDATMPTRGSEGAAGYDLASAHDCVVPARGKELVKTDLSIAIPLGTYARVAPRSGLAWKKFIDVGAGVVDYDYRGNVGVILFNHGDEDFEVKKGDRVAQLILEQILTPEVVE 124
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BLAST of jgi.p|Trimin1|156957 vs. uniprot
Match: B3RU43_TRIAD (Deoxyuridine 5'-triphosphate nucleotidohydrolase n=2 Tax=Trichoplax TaxID=10227 RepID=B3RU43_TRIAD)

HSP 1 Score: 120 bits (302), Expect = 1.760e-32
Identity = 58/119 (48.74%), Postives = 85/119 (71.43%), Query Frame = 1 
Query:    4 LNVQRLSENATLPTRAH-NAVGFDLYSAHSAVIPAHNNALVETDLSMQVPESAYGRITNKRRLGLKNKLEVYAGIVDGTHTGNVGVVLFNHADEDVTVNKGDCIAQLILEQVVIAQIKE 357
            L  ++LSENAT P R    A G+DLYSA  +VIP H  A+++TD+++ VP   YGR+  +  L +K  ++V AG++D  + GNVGVVLFNH  E+ +V+KG+ IAQLILE+++IA ++E
Sbjct:   19 LRFKKLSENATAPKRGSAQAAGYDLYSAEQSVIPPHGKAVIKTDIAIAVPAGCYGRVAPRSGLAVKKHIDVGAGVIDQDYRGNVGVVLFNHGKEEFSVSKGERIAQLILERILIAPLEE 137
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BLAST of jgi.p|Trimin1|156957 vs. uniprot
Match: A0A8N7XCR6_SPOFR (deoxyuridine 5'-triphosphate nucleotidohydrolase-like n=2 Tax=Spodoptera TaxID=7106 RepID=A0A8N7XCR6_SPOFR)

HSP 1 Score: 117 bits (292), Expect = 4.080e-31
Identity = 57/122 (46.72%), Postives = 83/122 (68.03%), Query Frame = 1 
Query:    4 LNVQRLSENATLPTR-AHNAVGFDLYSAHSAVIPAHNNALVETDLSMQVPESAYGRITNKRRLGLKNKLEVYAGIVDGTHTGNVGVVLFNHADEDVTVNKGDCIAQLILEQVVIAQIKEGNN 366
            L   RL+ENA  PT+ +  A G+DL SA++ V+PA    LV+TDL +++P   YGR+  +  L +KN ++V AG++D  + GNVGVV+FNH+D++  +NKGD IAQLI EQ+    +KE  N
Sbjct:    8 LKFARLTENAFPPTKGSEKAAGYDLKSAYNYVVPARGKELVKTDLQIELPSGCYGRVAPRSGLAVKNFIDVGAGVIDEDYRGNVGVVIFNHSDQEFVINKGDRIAQLICEQIYYPVLKEVTN 129
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BLAST of jgi.p|Trimin1|156957 vs. uniprot
Match: A0A0M9ACL6_9HYME (Deoxyuridine 5'-triphosphate nucleotidohydrolase n=1 Tax=Melipona quadrifasciata TaxID=166423 RepID=A0A0M9ACL6_9HYME)

HSP 1 Score: 116 bits (291), Expect = 5.010e-31
Identity = 55/123 (44.72%), Postives = 83/123 (67.48%), Query Frame = 1 
Query:    1 MLNVQRLSENATLPTRAHN-AVGFDLYSAHSAVIPAHNNALVETDLSMQVPESAYGRITNKRRLGLKNKLEVYAGIVDGTHTGNVGVVLFNHADEDVTVNKGDCIAQLILEQVVIAQIKEGNN 366
            ML   +LS+ A  PTR    A G+DL SA+  ++PAH   LV+TDL + VPE+ YGRI  +  L  KN +++ AG++D  + GNVGVVLFNH++ED  +  GD +AQ+I E+++  +++E N+
Sbjct:    1 MLKFAKLSDKAHAPTRGSEYAAGYDLKSAYEYIVPAHGKELVKTDLQIAVPENTYGRIAPRSGLAWKNHIDIGAGVIDADYRGNVGVVLFNHSNEDFKIMPGDRVAQIICEKIIYPELQEVNS 123
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|156957 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZCC1_9STRA1.320e-83100.00Deoxyuridine 5'-triphosphate nucleotidohydrolase n... [more]
A0A835YZ59_9STRA1.130e-3852.38Deoxyuridine 5'-triphosphate nucleotidohydrolase n... [more]
A0A835YWU8_9STRA1.080e-3765.09dUTPase domain-containing protein n=2 Tax=Tribonem... [more]
A0A835ZE92_9STRA5.820e-3450.00Deoxyuridine 5'-triphosphate nucleotidohydrolase n... [more]
A0A0L0GAG4_9EUKA1.140e-3349.58Deoxyuridine 5'-triphosphate nucleotidohydrolase n... [more]
A0A2R5GQR2_9STRA2.810e-3354.17Deoxyuridine 5'-triphosphate nucleotidohydrolase n... [more]
A4S9G9_OSTLU1.660e-3250.42Deoxyuridine 5'-triphosphate nucleotidohydrolase n... [more]
B3RU43_TRIAD1.760e-3248.74Deoxyuridine 5'-triphosphate nucleotidohydrolase n... [more]
A0A8N7XCR6_SPOFR4.080e-3146.72deoxyuridine 5'-triphosphate nucleotidohydrolase-l... [more]
A0A0M9ACL6_9HYME5.010e-3144.72Deoxyuridine 5'-triphosphate nucleotidohydrolase n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_2contigContig_2:1171631..1172008 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|156957|e_gw1.2.105.1
BRITEko00000,ko00001,ko00002,ko01000,ko03400
KEGG rclassRC00002
KEGG ReactionR02100,R11896
KEGG ModuleM00053
KEGG Pathwayko00240,ko00983,ko01100,map00240,map00983,map01100
KEGG koko:K01520
EC3.6.1.23
GOsGO:0000287,GO:0003674,GO:0003824,GO:0004170,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006139,GO:0006220,GO:0006221,GO:0006226,GO:0006244,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009129,GO:0009130,GO:0009141,GO:0009143,GO:0009147,GO:0009149,GO:0009157,GO:0009162,GO:0009165,GO:0009166,GO:0009176,GO:0009177,GO:0009200,GO:0009204,GO:0009211,GO:0009213,GO:0009219,GO:0009221,GO:0009223,GO:0009262,GO:0009263,GO:0009264,GO:0009265,GO:0009394,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0019692,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046078,GO:0046080,GO:0046081,GO:0046385,GO:0046386,GO:0046434,GO:0046483,GO:0046700,GO:0046872,GO:0047429,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0072529,GO:0090407,GO:1901135,GO:1901136,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576
DescriptionDeoxyuridine 5-triphosphate nucleotidohydrolase
COG categoryF
Max annot lvl33154|Opisthokonta
EggNOG OGsCOG0756@1|root,KOG3370@2759|Eukaryota,3A3T2@33154|Opisthokonta
Evalue1.87e-34
Seed ortholog72019.SARC_01856T0
Hectar predicted targeting categoryother localisation
TranscriptId157279
TrackFilteredModels1
ProteinId156957
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|156957gene_703Tribonema minus UTEX_B_3156 geneContig_2 1171631..1172008 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_703_1exon_703_1Tribonema minus UTEX_B_3156 exonContig_2 1171631..1172008 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_703CDS_703Tribonema minus UTEX_B_3156 CDSContig_2 1171631..1172008 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|156957Trimin1|156957|e_gw1.2.105.1Tribonema minus UTEX_B_3156 polypeptideContig_2 1171631..1172008 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_703 ID=mRNA_703|Name=jgi.p|Trimin1|156957|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=378bp|location=Sequence derived from alignment at Contig_2:1171631..1172008- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGAACGTCCAACGTCTATCCGAGAACGCTACTCTGCCCACCAGGGC
ACATAACGCTGTAGGCTTCGACTTGTACTCAGCACACTCTGCCGTGATCC
CCGCGCACAACAACGCACTGGTGGAGACTGATCTGAGCATGCAAGTGCCC
GAGAGTGCTTATGGCCGCATCACTAACAAGCGCAGACTGGGTTTGAAGAA
CAAGCTAGAAGTGTATGCCGGCATCGTGGATGGCACTCACACTGGAAACG
TAGGAGTTGTCTTGTTCAATCACGCTGACGAAGATGTAACGGTGAACAAA
GGCGATTGCATTGCGCAGCTCATCCTTGAACAAGTAGTCATTGCGCAGAT
CAAAGAGGGAAATAACGTGTACGCTTAG
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protein sequence of jgi.p|Trimin1|156957

>Trimin1|156957|e_gw1.2.105.1 ID=Trimin1|156957|e_gw1.2.105.1|Name=jgi.p|Trimin1|156957|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=126bp
MLNVQRLSENATLPTRAHNAVGFDLYSAHSAVIPAHNNALVETDLSMQVP
ESAYGRITNKRRLGLKNKLEVYAGIVDGTHTGNVGVVLFNHADEDVTVNK
GDCIAQLILEQVVIAQIKEGNNVYA*
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mRNA from alignment at Contig_2:1171631..1172008-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_703 ID=mRNA_703|Name=jgi.p|Trimin1|156957|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=378bp|location=Sequence derived from alignment at Contig_2:1171631..1172008- (Tribonema minus UTEX_B_3156 )
ATGCTGAACGTCCAACGTCTATCCGAGAACGCTACTCTGCCCACCAGGGC
ACATAACGCTGTAGGCTTCGACTTGTACTCAGCACACTCTGCCGTGATCC
CCGCGCACAACAACGCACTGGTGGAGACTGATCTGAGCATGCAAGTGCCC
GAGAGTGCTTATGGCCGCATCACTAACAAGCGCAGACTGGGTTTGAAGAA
CAAGCTAGAAGTGTATGCCGGCATCGTGGATGGCACTCACACTGGAAACG
TAGGAGTTGTCTTGTTCAATCACGCTGACGAAGATGTAACGGTGAACAAA
GGCGATTGCATTGCGCAGCTCATCCTTGAACAAGTAGTCATTGCGCAGAT
CAAAGAGGGAAATAACGTGTACGCTTAG
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Coding sequence (CDS) from alignment at Contig_2:1171631..1172008-

>mRNA_703 ID=mRNA_703|Name=jgi.p|Trimin1|156957|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=378bp|location=Sequence derived from alignment at Contig_2:1171631..1172008- (Tribonema minus UTEX_B_3156 )
ATGCTGAACGTCCAACGTCTATCCGAGAACGCTACTCTGCCCACCAGGGC
ACATAACGCTGTAGGCTTCGACTTGTACTCAGCACACTCTGCCGTGATCC
CCGCGCACAACAACGCACTGGTGGAGACTGATCTGAGCATGCAAGTGCCC
GAGAGTGCTTATGGCCGCATCACTAACAAGCGCAGACTGGGTTTGAAGAA
CAAGCTAGAAGTGTATGCCGGCATCGTGGATGGCACTCACACTGGAAACG
TAGGAGTTGTCTTGTTCAATCACGCTGACGAAGATGTAACGGTGAACAAA
GGCGATTGCATTGCGCAGCTCATCCTTGAACAAGTAGTCATTGCGCAGAT
CAAAGAGGGAAATAACGTGTACGCTTAG
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