mRNA_7018 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|167855
Unique NamemRNA_7018
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|167855 vs. uniprot
Match: A0A835YYZ1_9STRA (Histone H4 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYZ1_9STRA)

HSP 1 Score: 210 bits (534), Expect = 8.910e-69
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 1 
Query:    1 MSGVTKRGKCGVRKRGFVRHRKALRDSILGITKPAIRRLCRRGGVRRISGLIYEQMRGVLRVFMENVLRDAVTCTEHGRRKTVSALDVVYALKGQGRQLYGFGSETA 321
            MSGVTKRGKCGVRKRGFVRHRKALRDSILGITKPAIRRLCRRGGVRRISGLIYEQMRGVLRVFMENVLRDAVTCTEHGRRKTVSALDVVYALKGQGRQLYGFGSETA
Sbjct:    1 MSGVTKRGKCGVRKRGFVRHRKALRDSILGITKPAIRRLCRRGGVRRISGLIYEQMRGVLRVFMENVLRDAVTCTEHGRRKTVSALDVVYALKGQGRQLYGFGSETA 107
[Close]
BLAST of jgi.p|Trimin1|167855 vs. uniprot
Match: A0A250WY95_9CHLO (Histone H4 n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250WY95_9CHLO)

HSP 1 Score: 148 bits (374), Expect = 2.230e-44
Identity = 79/107 (73.83%), Postives = 90/107 (84.11%), Query Frame = 1 
Query:    1 MSGVTKRGKCGVRKRGFVRHRKALRDSILGITKPAIRRLCRRGGVRRISGLIYEQMRGVLRVFMENVLRDAVTCTEHGRRKTVSALDVVYALKGQGRQLYGFGSETA 321
            MSG  K GK G+ K G  RHRK LRD+I GITKPAIRRL RRGGV+RISGLIYE+ RGVL+VF+EN++RDAVT TEH RRKTV+ALDVVYALK QGR LYGFG +T+
Sbjct:    1 MSGRGKGGK-GLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENIIRDAVTYTEHARRKTVTALDVVYALKRQGRTLYGFGGDTS 106
[Close]
BLAST of jgi.p|Trimin1|167855 vs. uniprot
Match: A0A5B6VRJ0_9ROSI (Histone H4 n=2 Tax=rosids TaxID=71275 RepID=A0A5B6VRJ0_9ROSI)

HSP 1 Score: 147 bits (372), Expect = 4.360e-44
Identity = 79/106 (74.53%), Postives = 89/106 (83.96%), Query Frame = 1 
Query:    1 MSGVTKRGKCGVRKRGFVRHRKALRDSILGITKPAIRRLCRRGGVRRISGLIYEQMRGVLRVFMENVLRDAVTCTEHGRRKTVSALDVVYALKGQGRQLYGFGSET 318
            MSG  K GK G+ K G  RHRK LRD+I GITKPAIRRL RRGGV+RISGLIYE+ RGVL++F+ENV+RDAVT TEH RRKTV+A+DVVYALK QGR LYGFG ET
Sbjct:    1 MSGRGKGGK-GLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGVET 105
[Close]
BLAST of jgi.p|Trimin1|167855 vs. uniprot
Match: A0A7H4LLP7_WHEAT (Histone H4 n=3 Tax=Eukaryota TaxID=2759 RepID=A0A7H4LLP7_WHEAT)

HSP 1 Score: 146 bits (369), Expect = 1.250e-43
Identity = 78/105 (74.29%), Postives = 88/105 (83.81%), Query Frame = 1 
Query:    1 MSGVTKRGKCGVRKRGFVRHRKALRDSILGITKPAIRRLCRRGGVRRISGLIYEQMRGVLRVFMENVLRDAVTCTEHGRRKTVSALDVVYALKGQGRQLYGFGSE 315
            MSG  K GK G+ K G  RHRK LRD+I GITKPAIRRL RRGGV+RISGLIYE+ RGVL++F+ENV+RDAVT TEH RRKTV+A+DVVYALK QGR LYGFG E
Sbjct:    1 MSGRDKGGK-GLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGDE 104
[Close]
BLAST of jgi.p|Trimin1|167855 vs. uniprot
Match: A0A7J6IAQ5_CANSA (Histone H4 n=1 Tax=Cannabis sativa TaxID=3483 RepID=A0A7J6IAQ5_CANSA)

HSP 1 Score: 146 bits (369), Expect = 1.550e-43
Identity = 78/103 (75.73%), Postives = 88/103 (85.44%), Query Frame = 1 
Query:    1 MSGVTKRGKCGVRKRGFVRHRKALRDSILGITKPAIRRLCRRGGVRRISGLIYEQMRGVLRVFMENVLRDAVTCTEHGRRKTVSALDVVYALKGQGRQLYGFG 309
            MSG  K GK G+ K G  RHRK LRD+I GITKPAIRRL RRGGV+RISGLIYE+ RGVL++F+ENV+RDAVT TEHGRRKTV+A+DVVYALK QGR LYGFG
Sbjct:    1 MSGRGKGGK-GLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHGRRKTVTAMDVVYALKRQGRTLYGFG 102
[Close]
BLAST of jgi.p|Trimin1|167855 vs. uniprot
Match: A0A250X5X8_9CHLO (Histone H4 n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250X5X8_9CHLO)

HSP 1 Score: 147 bits (371), Expect = 1.560e-43
Identity = 80/107 (74.77%), Postives = 88/107 (82.24%), Query Frame = 1 
Query:    1 MSGVTKRGKCGVRKRGFVRHRKALRDSILGITKPAIRRLCRRGGVRRISGLIYEQMRGVLRVFMENVLRDAVTCTEHGRRKTVSALDVVYALKGQGRQLYGFGSETA 321
            MSG  K GK G+ K G  RHRK LRD+I GITKPAIRRL RRGGV+RISGLIYE+ RGVL+VF+ENV+RDAVT TEH RRKTV+ALDVVYALK QGR LYGFG   A
Sbjct:    1 MSGRGKGGK-GLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHARRKTVTALDVVYALKRQGRTLYGFGERAA 106
[Close]
BLAST of jgi.p|Trimin1|167855 vs. uniprot
Match: E1B7N2_BOVIN (Histone H4 n=3 Tax=Bos TaxID=9903 RepID=E1B7N2_BOVIN)

HSP 1 Score: 145 bits (367), Expect = 2.300e-43
Identity = 78/103 (75.73%), Postives = 88/103 (85.44%), Query Frame = 1 
Query:    1 MSGVTKRGKCGVRKRGFVRHRKALRDSILGITKPAIRRLCRRGGVRRISGLIYEQMRGVLRVFMENVLRDAVTCTEHGRRKTVSALDVVYALKGQGRQLYGFG 309
            MSG  K GK G+ K G  RHRK LRD+I GITKPAIRRL RRGGV+RISGLIYE+MRGVL+VF+ENV+RDAVT TEH +RKTV+A+DVVYALK QGR LYGFG
Sbjct:    1 MSGRGKGGK-GLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEEMRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFG 102
[Close]
BLAST of jgi.p|Trimin1|167855 vs. uniprot
Match: A0A3B6CBA0_WHEAT (Histone H4 n=2 Tax=Triticum TaxID=4564 RepID=A0A3B6CBA0_WHEAT)

HSP 1 Score: 145 bits (367), Expect = 2.300e-43
Identity = 77/103 (74.76%), Postives = 88/103 (85.44%), Query Frame = 1 
Query:    1 MSGVTKRGKCGVRKRGFVRHRKALRDSILGITKPAIRRLCRRGGVRRISGLIYEQMRGVLRVFMENVLRDAVTCTEHGRRKTVSALDVVYALKGQGRQLYGFG 309
            MSG+ K GK G+ K G  RHRK LRD+I GITKPAIRRL RRGGV+RISGLIYE+ RGVL++F+ENV+RDAVT TEH RRKTV+A+DVVYALK QGR LYGFG
Sbjct:    1 MSGLGKGGK-GLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 102
[Close]
BLAST of jgi.p|Trimin1|167855 vs. uniprot
Match: A0A4Y7JY77_PAPSO (Histone H4 n=2 Tax=Mesangiospermae TaxID=1437183 RepID=A0A4Y7JY77_PAPSO)

HSP 1 Score: 145 bits (367), Expect = 3.220e-43
Identity = 77/106 (72.64%), Postives = 89/106 (83.96%), Query Frame = 1 
Query:    1 MSGVTKRGKCGVRKRGFVRHRKALRDSILGITKPAIRRLCRRGGVRRISGLIYEQMRGVLRVFMENVLRDAVTCTEHGRRKTVSALDVVYALKGQGRQLYGFGSET 318
            MSG  K GK G+ K G  RHRK LRD+I GITKPAIRRL RRGGV+RISGLIYE+ RGVL++F+ENV+RDAVT TEH RRKTV+A+DVVYALK QGR LYGFG++ 
Sbjct:    1 MSGRGKGGK-GLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGAQA 105
[Close]
BLAST of jgi.p|Trimin1|167855 vs. uniprot
Match: A0A7S3RVL2_9SPIT (Histone H4 (Fragment) n=2 Tax=Sar TaxID=2698737 RepID=A0A7S3RVL2_9SPIT)

HSP 1 Score: 145 bits (366), Expect = 3.360e-43
Identity = 78/105 (74.29%), Postives = 88/105 (83.81%), Query Frame = 1 
Query:    1 MSGVTKRGKCGVRKRGFVRHRKALRDSILGITKPAIRRLCRRGGVRRISGLIYEQMRGVLRVFMENVLRDAVTCTEHGRRKTVSALDVVYALKGQGRQLYGFGSE 315
            MSG  K GK G+ K G  RHRK LRD+I GITKPAIRRL RRGGV+RISGLIYE+ RGVL+VF+ENV+RDAVT TEH RRKTV+A+DVVYALK QGR LYGFG +
Sbjct:    1 MSGRGKGGK-GLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGGQ 104
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|167855 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YYZ1_9STRA8.910e-69100.00Histone H4 n=1 Tax=Tribonema minus TaxID=303371 Re... [more]
A0A250WY95_9CHLO2.230e-4473.83Histone H4 n=1 Tax=Chlamydomonas eustigma TaxID=11... [more]
A0A5B6VRJ0_9ROSI4.360e-4474.53Histone H4 n=2 Tax=rosids TaxID=71275 RepID=A0A5B6... [more]
A0A7H4LLP7_WHEAT1.250e-4374.29Histone H4 n=3 Tax=Eukaryota TaxID=2759 RepID=A0A7... [more]
A0A7J6IAQ5_CANSA1.550e-4375.73Histone H4 n=1 Tax=Cannabis sativa TaxID=3483 RepI... [more]
A0A250X5X8_9CHLO1.560e-4374.77Histone H4 n=1 Tax=Chlamydomonas eustigma TaxID=11... [more]
E1B7N2_BOVIN2.300e-4375.73Histone H4 n=3 Tax=Bos TaxID=9903 RepID=E1B7N2_BOV... [more]
A0A3B6CBA0_WHEAT2.300e-4374.76Histone H4 n=2 Tax=Triticum TaxID=4564 RepID=A0A3B... [more]
A0A4Y7JY77_PAPSO3.220e-4372.64Histone H4 n=2 Tax=Mesangiospermae TaxID=1437183 R... [more]
A0A7S3RVL2_9SPIT3.360e-4374.29Histone H4 (Fragment) n=2 Tax=Sar TaxID=2698737 Re... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_54contigContig_54:163152..163475 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|167855|e_gw1.54.22.1
BRITEko00000,ko00001,ko03036
KEGG Pathwayko05034,ko05203,ko05322,map05034,map05203,map05322
KEGG koko:K11254
DescriptionCore component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling
COG categoryB
Max annot lvl35493|Streptophyta
EggNOG OGsCOG2036@1|root,KOG3467@2759|Eukaryota,37UE8@33090|Viridiplantae,3GIMJ@35493|Streptophyta
Evalue6.87e-42
Seed ortholog3712.Bo8g083070.1
Hectar predicted targeting categoryother localisation
TranscriptId168177
TrackFilteredModels1
ProteinId167855
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|167855gene_7018Tribonema minus UTEX_B_3156 geneContig_54 163152..163475 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_7018_1exon_7018_1Tribonema minus UTEX_B_3156 exonContig_54 163152..163475 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_7018CDS_7018Tribonema minus UTEX_B_3156 CDSContig_54 163152..163475 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|167855Trimin1|167855|e_gw1.54.22.1Tribonema minus UTEX_B_3156 polypeptideContig_54 163152..163475 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_7018 ID=mRNA_7018|Name=jgi.p|Trimin1|167855|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=324bp|location=Sequence derived from alignment at Contig_54:163152..163475- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGGCGTAACCAAACGCGGCAAATGCGGTGTACGCAAACGTGGTTT
TGTGCGTCATCGCAAGGCCCTGCGCGACAGTATCCTCGGCATCACGAAAC
CTGCTATTAGGCGATTGTGTCGTCGAGGCGGTGTGAGGCGCATCAGCGGA
CTCATCTACGAGCAGATGCGCGGTGTTCTTCGCGTGTTCATGGAGAATGT
GCTGCGAGATGCAGTAACCTGTACCGAACACGGACGGCGCAAGACTGTCA
GTGCCTTAGACGTGGTTTACGCCCTTAAAGGACAGGGTCGACAGCTTTAC
GGGTTCGGGAGTGAGACAGCTTGA
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protein sequence of jgi.p|Trimin1|167855

>Trimin1|167855|e_gw1.54.22.1 ID=Trimin1|167855|e_gw1.54.22.1|Name=jgi.p|Trimin1|167855|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=108bp
MSGVTKRGKCGVRKRGFVRHRKALRDSILGITKPAIRRLCRRGGVRRISG
LIYEQMRGVLRVFMENVLRDAVTCTEHGRRKTVSALDVVYALKGQGRQLY
GFGSETA*
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mRNA from alignment at Contig_54:163152..163475-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7018 ID=mRNA_7018|Name=jgi.p|Trimin1|167855|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=324bp|location=Sequence derived from alignment at Contig_54:163152..163475- (Tribonema minus UTEX_B_3156 )
ATGAGCGGCGTAACCAAACGCGGCAAATGCGGTGTACGCAAACGTGGTTT
TGTGCGTCATCGCAAGGCCCTGCGCGACAGTATCCTCGGCATCACGAAAC
CTGCTATTAGGCGATTGTGTCGTCGAGGCGGTGTGAGGCGCATCAGCGGA
CTCATCTACGAGCAGATGCGCGGTGTTCTTCGCGTGTTCATGGAGAATGT
GCTGCGAGATGCAGTAACCTGTACCGAACACGGACGGCGCAAGACTGTCA
GTGCCTTAGACGTGGTTTACGCCCTTAAAGGACAGGGTCGACAGCTTTAC
GGGTTCGGGAGTGAGACAGCTTGA
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Coding sequence (CDS) from alignment at Contig_54:163152..163475-

>mRNA_7018 ID=mRNA_7018|Name=jgi.p|Trimin1|167855|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=324bp|location=Sequence derived from alignment at Contig_54:163152..163475- (Tribonema minus UTEX_B_3156 )
ATGAGCGGCGTAACCAAACGCGGCAAATGCGGTGTACGCAAACGTGGTTT
TGTGCGTCATCGCAAGGCCCTGCGCGACAGTATCCTCGGCATCACGAAAC
CTGCTATTAGGCGATTGTGTCGTCGAGGCGGTGTGAGGCGCATCAGCGGA
CTCATCTACGAGCAGATGCGCGGTGTTCTTCGCGTGTTCATGGAGAATGT
GCTGCGAGATGCAGTAACCTGTACCGAACACGGACGGCGCAAGACTGTCA
GTGCCTTAGACGTGGTTTACGCCCTTAAAGGACAGGGTCGACAGCTTTAC
GGGTTCGGGAGTGAGACAGCTTGA
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