mRNA_6990 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|52072 vs. uniprot
Match: A0A835Z7P2_9STRA (Ubiquitin-protein ligase 1 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7P2_9STRA) HSP 1 Score: 386 bits (991), Expect = 2.900e-134 Identity = 191/191 (100.00%), Postives = 191/191 (100.00%), Query Frame = 1 Query: 1 GDGGLSPAARRRAVAAVERRCLTRHARCLEDLYAGVAAVVPAELLALFTAEEAEELFCGVPEVDVELLERVTEYEGVQPTDPHIQHFWTALRGMDARDRGALVLFCSGRARLPPSAADFPMNFTLTAPHPATHERPDDYLPLAQTCFFSLALPRYSSLETCRAKLLYAIRNANLMDADYVMRSADGWENLT 573 GDGGLSPAARRRAVAAVERRCLTRHARCLEDLYAGVAAVVPAELLALFTAEEAEELFCGVPEVDVELLERVTEYEGVQPTDPHIQHFWTALRGMDARDRGALVLFCSGRARLPPSAADFPMNFTLTAPHPATHERPDDYLPLAQTCFFSLALPRYSSLETCRAKLLYAIRNANLMDADYVMRSADGWENLT Sbjct: 1 GDGGLSPAARRRAVAAVERRCLTRHARCLEDLYAGVAAVVPAELLALFTAEEAEELFCGVPEVDVELLERVTEYEGVQPTDPHIQHFWTALRGMDARDRGALVLFCSGRARLPPSAADFPMNFTLTAPHPATHERPDDYLPLAQTCFFSLALPRYSSLETCRAKLLYAIRNANLMDADYVMRSADGWENLT 191
BLAST of jgi.p|Trimin1|52072 vs. uniprot
Match: A0A6H5KT07_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT07_9PHAE) HSP 1 Score: 254 bits (650), Expect = 1.500e-73 Identity = 127/186 (68.28%), Postives = 150/186 (80.65%), Query Frame = 1 Query: 13 LSPAARRRAVAAVERRCLTRHARCLEDLYAGVAAVVPAELLALFTAEEAEELFCGVPEVDVELLERVTEYEGVQPTDPHIQHFWTALRGMDARDRGALVLFCSGRARLPPSAADFPMNFTLTAPHPATHERPDDYLPLAQTCFFSLALPRYSSLETCRAKLLYAIRNANLMDADYVMRSADGWENL 570 LSP RR AV AVE+ LT +RCLE LY G+A V+P ELL +FTA EAE LFCGVPEVDV+LL+R TEYEGV+PTDPH+ +FW ALR M DR + V FCSGR+RLP SAA+F MNF LTAPH ++ PD+YLP+AQTCFFSLALP+YSS+E C KL YAI+NA+LMDADY++RSADGWENL Sbjct: 8373 LSPRQRRLAVRAVEQLRLTSGSRCLESLYQGLAGVLPVELLGVFTAAEAEALFCGVPEVDVDLLQRATEYEGVRPTDPHVGYFWQALRRMGREDRSSFVNFCSGRSRLPGSAAEFAMNFKLTAPH-RDYDDPDEYLPIAQTCFFSLALPKYSSVEVCLEKLRYAIKNADLMDADYLVRSADGWENL 8557
BLAST of jgi.p|Trimin1|52072 vs. uniprot
Match: D8LCZ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCZ5_ECTSI) HSP 1 Score: 253 bits (645), Expect = 7.020e-73 Identity = 125/181 (69.06%), Postives = 148/181 (81.77%), Query Frame = 1 Query: 28 RRRAVAAVERRCLTRHARCLEDLYAGVAAVVPAELLALFTAEEAEELFCGVPEVDVELLERVTEYEGVQPTDPHIQHFWTALRGMDARDRGALVLFCSGRARLPPSAADFPMNFTLTAPHPATHERPDDYLPLAQTCFFSLALPRYSSLETCRAKLLYAIRNANLMDADYVMRSADGWENL 570 RRRAV AVE+ LT +RCLE LY G+A V+P ELL +FTA EAE LFCGVPEVDV+LL+R TEYEGV+PTDPH+ +FW ALR M DR + V FCSGR+RLP SAA+F MNF LTAPH ++ PD+YLP+AQTCFFSLALP+YSS+E C KL YAI+NA+LMDADY++RSADGWENL Sbjct: 7678 RRRAVRAVEQLRLTSGSRCLESLYQGLAGVLPVELLGVFTAAEAEALFCGVPEVDVDLLQRATEYEGVRPTDPHVGYFWQALRRMGREDRSSFVNFCSGRSRLPGSAAEFAMNFKLTAPH-RDYDDPDEYLPIAQTCFFSLALPKYSSVEVCLEKLRYAIKNADLMDADYLVRSADGWENL 7857
BLAST of jgi.p|Trimin1|52072 vs. uniprot
Match: A0A7S2CPC5_9STRA (HECT-type E3 ubiquitin transferase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CPC5_9STRA) HSP 1 Score: 169 bits (429), Expect = 1.430e-48 Identity = 92/174 (52.87%), Postives = 113/174 (64.94%), Query Frame = 1 Query: 40 VAAVERRCLTRHARCLEDLYAGVAAVVPAELLALFTAEEAEELFCGVPEVDVELLERVTEYEGVQPTDPHIQHFWTALRGMDARDRGALVLFCSGRARLPPSAADFPMNFTLTAPHPATHERPDDYLPLAQTCFFSLALPRYSSLETCRAKLLYAIRNANLMDADYVMRSADGW 561 V AV L A L L G+A+V+P EL +FTAEE E L CGV EVDVELL+ TEYE V ++PHI FW L M +R L+ F R+R+P SA DFPMNF L P + + PD +LP AQTCFFSL+LP+Y+S ET RAKLL+AI N+ MDAD + SA+GW Sbjct: 47 VEAVAACRLRESAPLLRSLRNGLASVLPVELFPVFTAEELEVLVCGVREVDVELLKSCTEYEEVDESEPHIGFFWDVLEEMRPEERTQLLKFVWARSRMPNSAKDFPMNFKLQGPPTGSQDDPDSWLPHAQTCFFSLSLPKYTSKETLRAKLLFAINNSPNMDADVRLHSAEGW 220
BLAST of jgi.p|Trimin1|52072 vs. uniprot
Match: I2CP01_NANGC (E3 ubiquitin-protein ligase HERC2 n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CP01_NANGC) HSP 1 Score: 173 bits (438), Expect = 3.590e-46 Identity = 94/175 (53.71%), Postives = 112/175 (64.00%), Query Frame = 1 Query: 40 VAAVERRCLTRHARCLEDLYAGVAAVVPAELLALFTAEEAEELFCGVPEVDVELLERVTEYE-GVQPTDPHIQHFWTALRGMDARDRGALVLFCSGRARLPPSAADFPMNFTLTAPHPATHERPDDYLPLAQTCFFSLALPRYSSLETCRAKLLYAIRNANLMDADYVMRSADGW 561 V VE L A + G+AAVVP ELL LFT EE E+L CGV EVDVELL + T+YE GV P PH++ FW L M A +R + F R+R+P SA DFPMNF L P E+PDDYLP AQTCFFSL+LP+YSS E R KLL AI N+ MDAD + +A+GW Sbjct: 450 VRLVETVRLKESAAMMGAFQEGMAAVVPQELLPLFTEEEVEQLICGVREVDVELLRKCTDYEDGVDPDAPHVKAFWEVLEEMQAEERTDFLRFAWARSRMPASAKDFPMNFRLQGPQGGAKEKPDDYLPHAQTCFFSLSLPQYSSKEILREKLLLAISNSPNMDADVRLHTAEGW 624
BLAST of jgi.p|Trimin1|52072 vs. uniprot
Match: W7THG0_9STRA (Hect e3 ubiquitin n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7THG0_9STRA) HSP 1 Score: 173 bits (439), Expect = 2.450e-45 Identity = 94/175 (53.71%), Postives = 113/175 (64.57%), Query Frame = 1 Query: 40 VAAVERRCLTRHARCLEDLYAGVAAVVPAELLALFTAEEAEELFCGVPEVDVELLERVTEYE-GVQPTDPHIQHFWTALRGMDARDRGALVLFCSGRARLPPSAADFPMNFTLTAPHPATHERPDDYLPLAQTCFFSLALPRYSSLETCRAKLLYAIRNANLMDADYVMRSADGW 561 V VE L A + G+AAVVP ELL LFT EE E+L CGV EVDVELL++ T+YE GV P PH++ FW L M A +R + F R+R+P SA DFPMNF L P E+PDDYLP AQTCFFSL+LP+YSS E R KLL AI N+ MDAD + +A+GW Sbjct: 1592 VRLVETVRLKESAAMMGAFQEGMAAVVPQELLPLFTEEEVEQLICGVREVDVELLKKCTDYEDGVDPDAPHVKAFWEVLEEMQAEERTDFLRFAWARSRMPASAKDFPMNFRLQGPQGGAKEKPDDYLPHAQTCFFSLSLPQYSSKEILREKLLLAISNSPNMDADVRLHTAEGW 1766
BLAST of jgi.p|Trimin1|52072 vs. uniprot
Match: A0A4D9CXX4_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CXX4_9STRA) HSP 1 Score: 173 bits (439), Expect = 2.670e-45 Identity = 94/175 (53.71%), Postives = 113/175 (64.57%), Query Frame = 1 Query: 40 VAAVERRCLTRHARCLEDLYAGVAAVVPAELLALFTAEEAEELFCGVPEVDVELLERVTEYE-GVQPTDPHIQHFWTALRGMDARDRGALVLFCSGRARLPPSAADFPMNFTLTAPHPATHERPDDYLPLAQTCFFSLALPRYSSLETCRAKLLYAIRNANLMDADYVMRSADGW 561 V VE L A + G+AAVVP ELL LFT EE E+L CGV EVDVELL++ T+YE GV P PH++ FW L M A +R + F R+R+P SA DFPMNF L P E+PDDYLP AQTCFFSL+LP+YSS E R KLL AI N+ MDAD + +A+GW Sbjct: 5677 VRLVETVRLKESAAMMGAFQEGMAAVVPQELLPLFTEEEVEQLICGVREVDVELLKKCTDYEDGVDPDAPHVKAFWEVLEEMQAEERTDFLRFAWARSRMPASAKDFPMNFRLQGPQGGAKEKPDDYLPHAQTCFFSLSLPQYSSKEILREKLLLAISNSPNMDADVRLHTAEGW 5851
BLAST of jgi.p|Trimin1|52072 vs. uniprot
Match: A0A7S2D1C9_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D1C9_9STRA) HSP 1 Score: 164 bits (416), Expect = 3.950e-44 Identity = 90/186 (48.39%), Postives = 108/186 (58.06%), Query Frame = 1 Query: 13 LSPAARRRAVAAVERRCLTRHARCLEDLYAGVAAVVPAELLALFTAEEAEELFCGVPEVDVELLERVTEY----EGVQPTDPHIQHFWTALRGMDARDRGALVLFCSGRARLPPSAADFPMNFTLTAPHPATHERPDDYLPLAQTCFFSLALPRYSSLETCRAKLLYAIRNANLMDADYVMRSADG 558 LSPA R + VE R L L G+ VPA L LFT EE E L CG PE+D+ELL++VTEY EGV PHIQ+FW AL MD R + F S R+RLP S +FPMNF + P P PD +LP +QTCFF+L+LP YSS + C +LLYAI NA MD D+ R G Sbjct: 268 LSPANRAEFIRQVEHRHLEAMNPVLTAFLTGLGTAVPAPFLPLFTPEELEVLLCGKPEIDIELLKKVTEYDTATEGVTEKAPHIQYFWAALEQMDQAQRANFINFVSARSRLPNSVDEFPMNFKIQGPKPGAKNEPDKHLPSSQTCFFTLSLPFYSSQQVCYQRLLYAIENATTMDDDFTNREEWG 453
BLAST of jgi.p|Trimin1|52072 vs. uniprot
Match: A0A3L6VV80_9STRA (HECT domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6VV80_9STRA) HSP 1 Score: 159 bits (401), Expect = 2.730e-43 Identity = 85/160 (53.12%), Postives = 104/160 (65.00%), Query Frame = 1 Query: 85 LEDLYAGVAAVVPAELLALFTAEEAEELFCGVPEVDVELLERVTEYEGVQPTDPHIQHFWTALRGMDARDRGALVLFCSGRARLPPSAADFPMNFTLTAPHP-ATHERPDDYLPLAQTCFFSLALPRYSSLETCRAKLLYAIRNANLMDADYVMRSADGW 561 L L G++AV+P E+ LFTA+E E L CG EVDV LL++ TEYE V PT HI FW L DR +LF R+R+P SA DFPMNF + APH +PD YLP AQTCFFSL+LP YS+ +AKLLYAIRN+ MDAD + +A+GW Sbjct: 152 LAALREGLSAVIPMEIAGLFTAKELETLVCGRREVDVALLKQCTEYEDVDPTSAHIVVFWQVLEEFPPDDRTLFLLFVWARSRMPNSAKDFPMNFKIQAPHDQGARSQPDLYLPHAQTCFFSLSLPAYSTKAILKAKLLYAIRNSPNMDADVRLHNAEGW 311
BLAST of jgi.p|Trimin1|52072 vs. uniprot
Match: A0A662X8D1_9STRA (HECT domain-containing protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X8D1_9STRA) HSP 1 Score: 164 bits (414), Expect = 6.100e-43 Identity = 92/176 (52.27%), Postives = 114/176 (64.77%), Query Frame = 1 Query: 40 VAAVERRCLTRHARCLEDLYAGVAAVVPAELLALFTAEEAEELFCGVPEVDVELLERVTEY-EGVQPTDPHIQHFWTALRGMDARDRGALVLFCSGRARLPPSAADFPMNFTLTAPH-PATHERPDDYLPLAQTCFFSLALPRYSSLETCRAKLLYAIRNANLMDADYVMRSADGW 561 V VE+ LT ++ L L G+AAV+P EL LFT E E L CG EVDV+LL + TEY EG T PH+Q+FW LR M + +R + + F R+R+P SA DFPMNF L A H P PD YLP AQTCFF+L LP Y+S E RAKLLYAI+N+ MDAD + +A+GW Sbjct: 414 VQLVEKTRLTESSQQLAALKDGLAAVLPMELAPLFTPRELEVLICGRREVDVDLLRQCTEYSEGADETMPHVQNFWDVLREMTSEERTSFLRFVWARSRMPNSAKDFPMNFKLQAAHDPGAMGEPDLYLPHAQTCFFALRLPTYTSKEVLRAKLLYAIQNSPNMDADVRLHNAEGW 589 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|52072 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_6990 ID=mRNA_6990|Name=jgi.p|Trimin1|52072|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=833bp|location=Sequence derived from alignment at Contig_27:1022723..1024687- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GGCGACGGAGGGCTATCGCCGGCGGCGCGGCGGCGCGCGGTGGCGGCGGTback to top protein sequence of jgi.p|Trimin1|52072 >Trimin1|52072|CE52071_63 ID=Trimin1|52072|CE52071_63|Name=jgi.p|Trimin1|52072|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=192bp GDGGLSPAARRRAVAAVERRCLTRHARCLEDLYAGVAAVVPAELLALFTAback to top mRNA from alignment at Contig_27:1022723..1024687- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_6990 ID=mRNA_6990|Name=jgi.p|Trimin1|52072|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1965bp|location=Sequence derived from alignment at Contig_27:1022723..1024687- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_27:1022723..1024687- >mRNA_6990 ID=mRNA_6990|Name=jgi.p|Trimin1|52072|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=576bp|location=Sequence derived from alignment at Contig_27:1022723..1024687- (Tribonema minus UTEX_B_3156 )back to top |