mRNA_6972 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|51957 vs. uniprot
Match: A0A835YYK1_9STRA (Ribosomal protein S10 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYK1_9STRA) HSP 1 Score: 232 bits (591), Expect = 3.110e-76 Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 1 Query: 67 MSSFTKTKDIASEESRVHRIRITLTSRNVKNLEKVCADLKSGAVKHQLKVSGPVRLPTRKLKIVTRKSPCGNGTNTFDRFEMRIHKRIIDLHSPSEIVKQITSISIEPGVEVEVTIKDSN 426 MSSFTKTKDIASEESRVHRIRITLTSRNVKNLEKVCADLKSGAVKHQLKVSGPVRLPTRKLKIVTRKSPCGNGTNTFDRFEMRIHKRIIDLHSPSEIVKQITSISIEPGVEVEVTIKDSN Sbjct: 1 MSSFTKTKDIASEESRVHRIRITLTSRNVKNLEKVCADLKSGAVKHQLKVSGPVRLPTRKLKIVTRKSPCGNGTNTFDRFEMRIHKRIIDLHSPSEIVKQITSISIEPGVEVEVTIKDSN 120
BLAST of jgi.p|Trimin1|51957 vs. uniprot
Match: D7FM69_ECTSI (Ribosomal_S10 domain-containing protein n=3 Tax=Eukaryota TaxID=2759 RepID=D7FM69_ECTSI) HSP 1 Score: 195 bits (495), Expect = 1.340e-61 Identity = 98/119 (82.35%), Postives = 110/119 (92.44%), Query Frame = 1 Query: 67 MSSFTKTKDIASEESRVHRIRITLTSRNVKNLEKVCADLKSGAVKHQLKVSGPVRLPTRKLKIVTRKSPCGNGTNTFDRFEMRIHKRIIDLHSPSEIVKQITSISIEPGVEVEVTIKDS 423 MS++ K K + EE+RVHRIRITLTS+NVKNLEKVCADLK GAV+ +LKVSGPVRLPT+KLKIVTRKSPCG GTNT+DRFEMRIHKRI+DLHSPSEIVK+ITSISIEPGVEVEVTI D+ Sbjct: 1 MSAYVKGKGLGQEEARVHRIRITLTSKNVKNLEKVCADLKKGAVEKKLKVSGPVRLPTKKLKIVTRKSPCGEGTNTWDRFEMRIHKRILDLHSPSEIVKEITSISIEPGVEVEVTIADA 119
BLAST of jgi.p|Trimin1|51957 vs. uniprot
Match: A0A397FH44_9STRA (Ribosomal_S10 domain-containing protein n=8 Tax=Saprolegniaceae TaxID=4764 RepID=A0A397FH44_9STRA) HSP 1 Score: 189 bits (479), Expect = 6.760e-59 Identity = 97/116 (83.62%), Postives = 102/116 (87.93%), Query Frame = 1 Query: 79 TKTKDIASEESRVHRIRITLTSRNVKNLEKVCADLKSGAVKHQLKVSGPVRLPTRKLKIVTRKSPCGNGTNTFDRFEMRIHKRIIDLHSPSEIVKQITSISIEPGVEVEVTIKDSN 426 TK EESR+HRIRITLTSRNVKNLEKVCADLK GAV LKVSGPVRLPT+ L++ TRKSPCG GTNT+DRFEMRIHKRIIDLHSPSEIVKQITSISIEPGVEVEVTI DSN Sbjct: 25 TKPTGFEGEESRIHRIRITLTSRNVKNLEKVCADLKKGAVDKNLKVSGPVRLPTKILRLTTRKSPCGEGTNTWDRFEMRIHKRIIDLHSPSEIVKQITSISIEPGVEVEVTIADSN 140
BLAST of jgi.p|Trimin1|51957 vs. uniprot
Match: A0A329RI77_9STRA (Ribosomal_S10 domain-containing protein n=11 Tax=Phytophthora TaxID=4783 RepID=A0A329RI77_9STRA) HSP 1 Score: 188 bits (478), Expect = 2.220e-58 Identity = 97/122 (79.51%), Postives = 107/122 (87.70%), Query Frame = 1 Query: 58 SSTMSSFTKTKDIASEESRVHRIRITLTSRNVKNLEKVCADLKSGAVKHQLKVSGPVRLPTRKLKIVTRKSPCGNGTNTFDRFEMRIHKRIIDLHSPSEIVKQITSISIEPGVEVEVTIKDS 423 SS MS K K + +EE+R+HRIRITLTSRNVKNLEKVCADLK GAV LKVSGPVRLPT+ L++ TRKSPCG GTNT+DRFEMRIHKRIIDLH+PS+IVKQITSISIEPGVEVEVTI DS Sbjct: 44 SSIMSLVNKPKTVEAEETRIHRIRITLTSRNVKNLEKVCADLKRGAVDKNLKVSGPVRLPTKILRLTTRKSPCGEGTNTWDRFEMRIHKRIIDLHAPSDIVKQITSISIEPGVEVEVTIADS 165
BLAST of jgi.p|Trimin1|51957 vs. uniprot
Match: G4YYZ2_PHYSP (Ribosomal_S10 domain-containing protein n=7 Tax=Oomycota TaxID=4762 RepID=G4YYZ2_PHYSP) HSP 1 Score: 185 bits (469), Expect = 1.180e-57 Identity = 94/119 (78.99%), Postives = 105/119 (88.24%), Query Frame = 1 Query: 67 MSSFTKTKDIASEESRVHRIRITLTSRNVKNLEKVCADLKSGAVKHQLKVSGPVRLPTRKLKIVTRKSPCGNGTNTFDRFEMRIHKRIIDLHSPSEIVKQITSISIEPGVEVEVTIKDS 423 MS K K + +EE+R+HRIRITL+SRNVKNLEKVCADLK GAV LKVSGPVRLPT+ L++ TRKSPCG GTNT+DRFEMRIHKRIIDLH+PS+IVKQITSISIEPGVEVEVTI DS Sbjct: 1 MSLVNKPKTVEAEETRIHRIRITLSSRNVKNLEKVCADLKRGAVDKNLKVSGPVRLPTKILRLTTRKSPCGEGTNTWDRFEMRIHKRIIDLHAPSDIVKQITSISIEPGVEVEVTIADS 119
BLAST of jgi.p|Trimin1|51957 vs. uniprot
Match: H3GAS8_PHYRM (Ribosomal_S10 domain-containing protein n=9 Tax=Eukaryota TaxID=2759 RepID=H3GAS8_PHYRM) HSP 1 Score: 185 bits (469), Expect = 1.180e-57 Identity = 94/119 (78.99%), Postives = 105/119 (88.24%), Query Frame = 1 Query: 67 MSSFTKTKDIASEESRVHRIRITLTSRNVKNLEKVCADLKSGAVKHQLKVSGPVRLPTRKLKIVTRKSPCGNGTNTFDRFEMRIHKRIIDLHSPSEIVKQITSISIEPGVEVEVTIKDS 423 MS K K + +EE+R+HRIRITL+SRNVKNLEKVCADLK GAV LKVSGPVRLPT+ L++ TRKSPCG GTNT+DRFEMRIHKRIIDLH+PS+IVKQITSISIEPGVEVEVTI DS Sbjct: 1 MSLVNKQKTVEAEETRIHRIRITLSSRNVKNLEKVCADLKRGAVDKNLKVSGPVRLPTKILRLTTRKSPCGEGTNTWDRFEMRIHKRIIDLHAPSDIVKQITSISIEPGVEVEVTIADS 119
BLAST of jgi.p|Trimin1|51957 vs. uniprot
Match: A0A421F2P5_9STRA (Ribosomal_S10 domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421F2P5_9STRA) HSP 1 Score: 184 bits (466), Expect = 9.130e-57 Identity = 95/121 (78.51%), Postives = 107/121 (88.43%), Query Frame = 1 Query: 61 STMSSFTKTKDIASEESRVHRIRITLTSRNVKNLEKVCADLKSGAVKHQLKVSGPVRLPTRKLKIVTRKSPCGNGTNTFDRFEMRIHKRIIDLHSPSEIVKQITSISIEPGVEVEVTIKDS 423 STMS K K + +EE+R+HRIRITL+SRNVKNLEKVCADLK GAV LKV+GPVRLPT+ L++ TRKSPCG GTNT+DRFEMRIHKRIIDLH+PS+IVKQITSISIEPGVEVEVTI DS Sbjct: 31 STMS-LNKPKTVEAEETRIHRIRITLSSRNVKNLEKVCADLKRGAVDKNLKVAGPVRLPTKILRLTTRKSPCGEGTNTWDRFEMRIHKRIIDLHAPSDIVKQITSISIEPGVEVEVTIADS 150
BLAST of jgi.p|Trimin1|51957 vs. uniprot
Match: A0A024G970_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G970_9STRA) HSP 1 Score: 186 bits (473), Expect = 1.420e-53 Identity = 99/137 (72.26%), Postives = 112/137 (81.75%), Query Frame = 1 Query: 16 KKRHQDQVTAVPSASS-TMSSFTKTKDIASEESRVHRIRITLTSRNVKNLEKVCADLKSGAVKHQLKVSGPVRLPTRKLKIVTRKSPCGNGTNTFDRFEMRIHKRIIDLHSPSEIVKQITSISIEPGVEVEVTIKDS 423 K R DQ+ +PS S TMS K K++ E +HRIRITLTSRNVKNLEKVCADLK GA+ LKVSGPVRLPT+ L+I TRKSPCG GTNT+DRFEMRIHKRI+DLH+PS++VKQITSISIEPGVEVEVTI DS Sbjct: 388 KFRKFDQLNPLPSIQSLTMSLLNKPKNLEPENVPIHRIRITLTSRNVKNLEKVCADLKRGALDKNLKVSGPVRLPTKFLRITTRKSPCGEGTNTWDRFEMRIHKRILDLHAPSDVVKQITSISIEPGVEVEVTIADS 524
BLAST of jgi.p|Trimin1|51957 vs. uniprot
Match: A0A7S0INE6_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0INE6_9EUKA) HSP 1 Score: 175 bits (444), Expect = 2.600e-53 Identity = 96/136 (70.59%), Postives = 108/136 (79.41%), Query Frame = 1 Query: 16 KKRHQDQVTAVPSASSTMSSFTKTKDIASEES-RVHRIRITLTSRNVKNLEKVCADLKSGAVKHQLKVSGPVRLPTRKLKIVTRKSPCGNGTNTFDRFEMRIHKRIIDLHSPSEIVKQITSISIEPGVEVEVTIKD 420 K+R + AV + +S K K I E + +VHRIRITLTSRNVKNLEKVCADL GA + +LKV GPVRLPT+ L+I TRKSPCG GTNT+DRFEMRIHKR+IDLHSPSEIVKQITSISIEPGVEVEVTI D Sbjct: 22 KERRVATMAAVDTMPPVDASAMKAKHIEEEAAVKVHRIRITLTSRNVKNLEKVCADLIRGAKEKRLKVKGPVRLPTKVLRITTRKSPCGEGTNTWDRFEMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIAD 157
BLAST of jgi.p|Trimin1|51957 vs. uniprot
Match: A0A6U5GMR1_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A6U5GMR1_9STRA) HSP 1 Score: 174 bits (440), Expect = 3.350e-53 Identity = 87/109 (79.82%), Postives = 98/109 (89.91%), Query Frame = 1 Query: 94 IASEESRVHRIRITLTSRNVKNLEKVCADLKSGAVKHQLKVSGPVRLPTRKLKIVTRKSPCGNGTNTFDRFEMRIHKRIIDLHSPSEIVKQITSISIEPGVEVEVTIKD 420 I +++VHRIRITLTSRNVKNLEKVCADLK GA+ +LKVSGPVRLPT+KL I TRK+P G GTNT+DRFEMRIHKR+IDLHSP+EIVKQITSISIEPGVEVEVT+ D Sbjct: 14 IVEADAKVHRIRITLTSRNVKNLEKVCADLKRGALDKKLKVSGPVRLPTKKLTITTRKAPSGEGTNTWDRFEMRIHKRLIDLHSPAEIVKQITSISIEPGVEVEVTVAD 122 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|51957 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_6972 ID=mRNA_6972|Name=jgi.p|Trimin1|51957|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=504bp|location=Sequence derived from alignment at Contig_27:836074..837822- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CACGCCTGGGACCACAAAAAACGACATCAGGACCAGGTTACCGCTGTTCCback to top protein sequence of jgi.p|Trimin1|51957 >Trimin1|51957|CE51956_22836 ID=Trimin1|51957|CE51956_22836|Name=jgi.p|Trimin1|51957|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=121bp MSSFTKTKDIASEESRVHRIRITLTSRNVKNLEKVCADLKSGAVKHQLKVback to top mRNA from alignment at Contig_27:836074..837822- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_6972 ID=mRNA_6972|Name=jgi.p|Trimin1|51957|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1749bp|location=Sequence derived from alignment at Contig_27:836074..837822- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_27:836074..837822- >mRNA_6972 ID=mRNA_6972|Name=jgi.p|Trimin1|51957|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=363bp|location=Sequence derived from alignment at Contig_27:836074..837822- (Tribonema minus UTEX_B_3156 )back to top |