mRNA_6952 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|348584
Unique Name	mRNA_6952
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|348584 vs. uniprot
Match: A0A836CHB6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHB6_9STRA)

HSP 1 Score: 413 bits (1062), Expect = 9.760e-140
Identity = 213/213 (100.00%), Postives = 213/213 (100.00%), Query Frame = 1

Query:    1 MDLADIPAAIRIDLASGMGSGLDVIRLVNPEIPSNQASSAFKRLATELPDVASIAFGDLVRRVVQPPAHDDGALIVARPMSEDDPSVATPLAQIFAENTYWKRDQDLMEEAIRTADLYCGTAKEHRWNCLCFNTTFTFGVLSLTLKLQLQSAHCASRRCRGRRKVQWRAARAGRWSRGACKRAVSACASVARQLTAVAAAAFGSAGRGAVAFF 639
            MDLADIPAAIRIDLASGMGSGLDVIRLVNPEIPSNQASSAFKRLATELPDVASIAFGDLVRRVVQPPAHDDGALIVARPMSEDDPSVATPLAQIFAENTYWKRDQDLMEEAIRTADLYCGTAKEHRWNCLCFNTTFTFGVLSLTLKLQLQSAHCASRRCRGRRKVQWRAARAGRWSRGACKRAVSACASVARQLTAVAAAAFGSAGRGAVAFF
Sbjct:    1 MDLADIPAAIRIDLASGMGSGLDVIRLVNPEIPSNQASSAFKRLATELPDVASIAFGDLVRRVVQPPAHDDGALIVARPMSEDDPSVATPLAQIFAENTYWKRDQDLMEEAIRTADLYCGTAKEHRWNCLCFNTTFTFGVLSLTLKLQLQSAHCASRRCRGRRKVQWRAARAGRWSRGACKRAVSACASVARQLTAVAAAAFGSAGRGAVAFF 213

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BLAST of jgi.p|Trimin1|348584 vs. uniprot
Match: A0A835YVX0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVX0_9STRA)

HSP 1 Score: 303 bits (777), Expect = 2.390e-97
Identity = 162/178 (91.01%), Postives = 164/178 (92.13%), Query Frame = -2

Query:  554 MGDAGCCHRMGGAESHVRTAALCKCNARCSRHVASNAVRPSCRLHRSCCPPGPSEKI*SCCIRCPCLCICQRVRCEHQVWWRQPRRRNRRCRQHYIDVAPAAXXXXXXXXXXXXXXXXVGRRRGAGDGGAGIERTLPVKLPICRLPDAAKKKPRRPCRRCQTLRPPLRSVASPRKRKR 1087
            MGDAGCCHRMGGAES VRTAALCKCNARCSRHVASNAVRPSCRLHRS CPPGPSEKI +CCIRCPCLCICQRVRCEHQ WWR PRR NRRC QHYIDVAPAA    XXXXXXXXXXXXVGRRRGAG+GGAGIERTLPVKLPICRLPDAAK  PRRP RRCQTLRPPLRSVASPRKRKR
Sbjct:    1 MGDAGCCHRMGGAESRVRTAALCKCNARCSRHVASNAVRPSCRLHRSWCPPGPSEKIINCCIRCPCLCICQRVRCEHQAWWRHPRRCNRRCHQHYIDVAPAAPQQPXXXXXXXXXXXXVGRRRGAGNGGAGIERTLPVKLPICRLPDAAKIWPRRPRRRCQTLRPPLRSVASPRKRKR 178

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BLAST of jgi.p|Trimin1|348584 vs. uniprot
Match: A0A835YN01_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN01_9STRA)

HSP 1 Score: 134 bits (337), Expect = 3.230e-32
Identity = 97/234 (41.45%), Postives = 103/234 (44.02%), Query Frame = 1

Query:    1 MDLADIPAAIRIDLASGMGSGLDVIRLVNPEIPSNQASSAFKRLATELPDVAS-----------------------------------------------IAFGDL-----------VRRVVQPPAHDDGALIVARPMSEDDPSVATPLAQ-----------------------------------------------------------IFAENTYWKRDQDLMEEAIRTADL 351
            M+LAD PAAIRIDLASGMGS LDVIRLVNPEIPSNQAS  FKRLATELPDVAS                                               +  GD+             +  +PPAHDDGALIVARPMSEDDPSV TPLAQ                                                           IFAENTYWKRDQDLMEEAI T  +
Sbjct:    1 MELADTPAAIRIDLASGMGSVLDVIRLVNPEIPSNQASFTFKRLATELPDVASSCRQLRIYGNGKLTPCADARTLVEIVWSLPGKPARAFRRTSATTVCRVLGGDVSLVDEIEGRCRALQATEPPAHDDGALIVARPMSEDDPSVPTPLAQVAHQGPEISMHSVAAEMGVRIKAGTECLIGKKVKALYAIKYGTAAAAAIPKRNIPFRGQIFAENTYWKRDQDLMEEAIHTVTM 234

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BLAST of jgi.p|Trimin1|348584 vs. uniprot
Match: A0A835Z1W0_9STRA (Uncharacterized protein n=8 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1W0_9STRA)

HSP 1 Score: 125 bits (314), Expect = 3.760e-28
Identity = 110/324 (33.95%), Postives = 112/324 (34.57%), Query Frame = 1

Query:    1 MDLADIPAAIRIDLASGMGSGLDVIRLVNPEIPSNQASSAFKRLATELPDVAS----------------------------------------------------------------------------------------------------------------------------------------------------IAFGDLVRRVVQPPAHDDGALIVARPMSEDDPSVATPLAQI-----------------------------------------------------------FAENTYWKRDQDLMEEAIRTADL 351
            M+LADIPAAIRIDLASGMGS LDVIRLVNPEIPSNQASS FKRLA ELPDVAS                                                                                                                                                    IAFGDLVRRVVQPPAHD GALIVARPMSEDDPSVATPLAQ+                                                           FAENTYWKRDQDLMEEAIRTA L
Sbjct:    1 MELADIPAAIRIDLASGMGSVLDVIRLVNPEIPSNQASSTFKRLALELPDVASSCRQLRINGNGKLTPCADARTLVEIVWSLPGKPARAFRRTSATTVCRVLGGDVSLVNEIEGRCRALQATEVGRAAQDFLIGDGSVQVSRELPAELQLATPEQRTLFVASWMHERRLALIDREKTQQLALIKNGFDLLGSFGVADARDRIAFGDLVRRVVQPPAHDAGALIVARPMSEDDPSVATPLAQVAHRGPEISMHSVAAEMGVRIKAGTECLIGKKVKALYAIKYGTAAAAAIPKRNVPFRGKVFAENTYWKRDQDLMEEAIRTATL 324

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BLAST of jgi.p|Trimin1|348584 vs. uniprot
Match: A0A835ZAN0_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAN0_9STRA)

HSP 1 Score: 127 bits (319), Expect = 6.890e-27
Identity = 103/290 (35.52%), Postives = 110/290 (37.93%), Query Frame = 1

Query:    1 MDLADIPAAIRIDLASGMGSGLDVIRLVNPEIPSNQASSAFKRLATELPDVAS------------------------------------------------------------------------------------------------------------------IAFGDLVRRVVQPPAHDDGALIVARPMSEDDPSVATPLA-----------------------------------------------------------QIFAENTYWKRDQDLMEEAIRTADL 351
            ++LADIPAAIRI+LASGMGS LDVIRLVNPEIPSNQASS FKR+ATELPD+AS                                                                                                                  IAFGDLVRRVVQPPAHDDGALIVARPMSEDDPSVATP A                                                           QIFAENTYWKR+QD MEEAI T  +
Sbjct:  133 LELADIPAAIRINLASGMGSVLDVIRLVNPEIPSNQASSTFKRVATELPDMASSCCQLRINGNGKLTPCADARTLVEIVGSLPGKPARAFRRTSATTVCRVLGGDVSLVDEIEGRCRALQATEMGRAAQDFLIGDGSDQVSRDLPAELQLATPEQRTFFGVADARDRIAFGDLVRRVVQPPAHDDGALIVARPMSEDDPSVATPSAHVAHRGPEISMQSVAAEMGVRIKAGTECLIGKKVKALYAIKYGTAAAAAIPKRNITFRGQIFAENTYWKRNQDHMEEAISTVTM 422

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BLAST of jgi.p|Trimin1|348584 vs. uniprot
Match: A0A836CKR1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKR1_9STRA)

HSP 1 Score: 111 bits (278), Expect = 4.790e-24
Identity = 102/241 (42.32%), Postives = 120/241 (49.79%), Query Frame = 1

Query:  343 ADLYCGTAKEHRWNCLCFNTTFTFGVLS--LTLKLQLQ-------SAH---------------------CAS-----RRCRGRRK-VQWRAA---RAGR-------WSRGACKRAVSACASVARQLTAVAAAAFGSAGRGAVAFF*LRQVGDISEALRATCAQCRHRHRPRLVGAPLGDAEGAVSVIMAAAVAPPVQHQCSADDSGG----CGAWAAATIPGVHSARVGKCTGMDTECSSF 915
            ADL+ GT+ E R +CL  +TTFTFGVLS  +TLKLQL        +AH                     CA      RR + RRK +++R     R+GR       W    C R  + C    R  T +      S  R     F         EALRAT AQCRH H P LV APL + EGA+ +I AAA A PVQHQC ADDS      C   AAAT+   HS R+G CTGMDTECSSF
Sbjct:   19 ADLHAGTSNERRCHCLRSDTTFTFGVLSRTVTLKLQLHRQITPRAAAHWQASAGRNGALPTGVQLWDVRCARWAMEPRRVQARRKRLRFRGEATDRSGRRSVLGTPWPNYGCIRLAAYC----RPPTCIHRIGLTSWPRRIRPRF-------KQEALRATRAQCRHCHCPGLVDAPLDENEGALFIITAAAAAWPVQHQCIADDSSSGSSACSVGAAATM---HSTRIGSCTGMDTECSSF 245

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BLAST of jgi.p|Trimin1|348584 vs. uniprot
Match: A0A836CBT4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBT4_9STRA)

HSP 1 Score: 104 bits (260), Expect = 1.230e-19
Identity = 64/119 (53.78%), Postives = 65/119 (54.62%), Query Frame = 1

Query:  160 IAFGDLVRRVVQPPAHDDGALIVARPMSEDDPSVATPLAQ---------------------------------------IFAENTYWKRDQDLMEEAIRTADLY--CGTAKEHRWNCLC 393
            IAFGDLVRRVVQPPAHDDGALIVARPMSEDDPSVATPLAQ                                       I AENTYWKRDQDLMEEAIRT  +   C T       C C
Sbjct:  139 IAFGDLVRRVVQPPAHDDGALIVARPMSEDDPSVATPLAQVAHRGPEISMHSVAAEMGVRIKAGTVFDREEGEGFVHHQICAENTYWKRDQDLMEEAIRTVTMLNRCDTTSADCRLCQC 257

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BLAST of jgi.p|Trimin1|348584 vs. uniprot
Match: A0A836CN02_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN02_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 1.500e-19
Identity = 59/123 (47.97%), Postives = 61/123 (49.59%), Query Frame = 1

Query:  160 IAFGDLVRRVVQPPAHDDGALIVARPMSEDDPSVATPLAQI-----------------------------------------------------------FAENTYWKRDQDLMEEAIRTADL 351
            IAFGDLVRRVVQPPAHDDGALIVARPM EDDPSVATPLAQ+                                                           FAENTYWKRDQDLMEEAIRT  +
Sbjct:   39 IAFGDLVRRVVQPPAHDDGALIVARPMCEDDPSVATPLAQVAHRGPEISMHSVAAEMGVRIKAGSECLIGKKVKALYAIKYGTAAAAAIPKRNVPFRGKVFAENTYWKRDQDLMEEAIRTVTM 161

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BLAST of jgi.p|Trimin1|348584 vs. uniprot
Match: A0A836CKR7_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKR7_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 1.090e-18
Identity = 80/242 (33.06%), Postives = 84/242 (34.71%), Query Frame = 1

Query:    1 MDLADIPAAIRIDLASGMGSGLDVIRLVNPEIPSNQASSAFKRLATELPDVAS----------------------------------------------------------------------------------------------------------------------------------------------------IAFGDLVRRVVQPPAHDDGALIVARPMSEDDPSVATPLAQI 282
            M+L DIP AIRIDLAS MGS LDVIRLVNPE PSNQ  S FKRLATELPDVAS                                                                                                                                                    +AFGDL RRVVQPPAHDD ALIVARPMSEDDP+VATPLAQ+
Sbjct:    1 MELVDIPTAIRIDLASNMGSVLDVIRLVNPETPSNQVPSTFKRLATELPDVASSCCQLRMNRNGKLTPCADARTLVQNVWSLPGKPACAFRRTSATTVCRIVGGDVSLVDEIEGRCRALQATEVGRAARDFLIGDGGVQVSRELPPELQLGTREQRTLCVANWMHERRLALIDHEKTQQLALIKNGFDLVGSFGVADARDRMAFGDLARRVVQPPAHDDSALIVARPMSEDDPTVATPLAQV 242

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BLAST of jgi.p|Trimin1|348584 vs. uniprot
Match: A0A835YYW8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYW8_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 4.000e-9
Identity = 34/53 (64.15%), Postives = 42/53 (79.25%), Query Frame = 1

Query:    1 MDLADIPAAIRIDLASGMGSGLDVIRLVNPEIPSNQASSAFKRLATELPDVAS 159
            MD+AD   +IR+D AS  GS +DVIRLV P +PSNQAS+ F RLA+E+PDVAS
Sbjct:    1 MDVADFTTSIRVDSASNKGSVIDVIRLVIPNLPSNQASTTFARLASEMPDVAS 53

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|348584 vs. uniprot

BLAST of jgi.p|Trimin1|348584 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11


Match Name	E-value	Identity	Description
A0A836CHB6_9STRA	9.760e-140	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A835YVX0_9STRA	2.390e-97	91.01	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A835YN01_9STRA	3.230e-32	41.45	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A835Z1W0_9STRA	3.760e-28	33.95	Uncharacterized protein n=8 Tax=Tribonema minus Ta...	[more]
A0A835ZAN0_9STRA	6.890e-27	35.52	Uncharacterized protein n=2 Tax=Tribonema minus Ta...	[more]
A0A836CKR1_9STRA	4.790e-24	42.32	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A836CBT4_9STRA	1.230e-19	53.78	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A836CN02_9STRA	1.500e-19	47.97	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A836CKR7_9STRA	1.090e-18	33.06	Uncharacterized protein n=2 Tax=Tribonema minus Ta...	[more]
A0A835YYW8_9STRA	4.000e-9	64.15	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_27	contig	Contig_27:681634..691256 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|348584\|estExt_Genemark1.C_Ctg_270074
Hectar predicted targeting category	other localisation
TranscriptId	348906
Track	FilteredModels1
ProteinId	348584

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|348584	gene_6952	Tribonema minus UTEX_B_3156	gene	Contig_27 681634..691256 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|348584	Trimin1\|348584\|estExt_Genemark1.C_Ctg_270074	Tribonema minus UTEX_B_3156	polypeptide	Contig_27 681634..688763 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_6952_1	exon_6952_1	Tribonema minus UTEX_B_3156	exon	Contig_27 681634..681791 +
exon_6952_2	exon_6952_2	Tribonema minus UTEX_B_3156	exon	Contig_27 682244..682364 +
exon_6952_3	exon_6952_3	Tribonema minus UTEX_B_3156	exon	Contig_27 682535..682597 +
exon_6952_4	exon_6952_4	Tribonema minus UTEX_B_3156	exon	Contig_27 688464..688787 +
exon_6952_5	exon_6952_5	Tribonema minus UTEX_B_3156	exon	Contig_27 689572..689652 +
exon_6952_6	exon_6952_6	Tribonema minus UTEX_B_3156	exon	Contig_27 690202..691256 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_6952	CDS_6952	Tribonema minus UTEX_B_3156	CDS	Contig_27 681634..681791 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_6952	UTR3_6952	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_27 688764..688787 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_27:681634..691256+
coding sequence from alignment at Contig_27:681634..691256+

spliced messenger RNA

>mRNA_6952 ID=mRNA_6952|Name=jgi.p|Trimin1|348584|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1802bp|location=Sequence derived from alignment at Contig_27:681634..691256+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGACCTGGCTGATATCCCCGCCGCCATTCGCATCGATCTCGCTTCGGG
GATGGGCAGCGGGCTTGATGTCATACGCCTCGTGAATCCTGAGATACCCT
CAAACCAGGCGTCTTCCGCCTTCAAGAGGCTGGCAACAGAGTTGCCAGAC
GTGGCGTCGATCGCCTTCGGAGACCTGGTGCGCCGTGTTGTACAGCCCCC
TGCACATGATGACGGCGCACTCATTGTCGCACGGCCAATGAGCGAGGATG
ACCCGAGCGTGGCGACGCCCTTGGCGCAGATATTCGCTGAGAACACATAC
TGGAAGCGCGATCAGGACCTCATGGAGGAGGCGATCCGCACGGCGGATTT
GTATTGCGGGACTGCCAAAGAGCACCGCTGGAACTGCCTGTGCTTCAACA
CCACCTTCACGTTCGGCGTGCTCTCGCTAACGCTCAAGCTTCAGCTGCAA
TCGGCACATTGCGCCTCGCGCCGCTGCCGAGGACGCCGCAAGGTACAATG
GCGCGCTGCCCGCGCTGGGCGATGGAGCCGAGGCGCGTGTAAGCGTGCTG
TCAGCGCTTGCGCTTCCGTGGCGAGGCAACTGACCGCAGTGGCGGCCGCA
GCGTTTGGCAGCGCCGGCAGGGGCGCCGTGGCTTTTTTTTAGCTGCGTCA
GGTAGGCGACATATCGGAAGCTTTACGGGCAACGTGCGCTCAATGCCGGC
ACCGCCATCGCCCGCGCCTCGTCGGCGCCCCACTTGGTGATGCTGAGGGG
GCGGTGTCCGTAATAATGGCGGCTGCTGTGGCGCCGCCGGTGCAACATCA
ATGTAGTGCTGACGACAGCGGCGGTTGCGGCGCCTGGGCTGCCGCCACCA
TACCTGGTGTTCACAGCGCACGCGTTGGCAAATGCACAGGCATGGACACC
GAATGCAGCAGCTTCAAATTTTCTCAGAAGGACCTGGTGGGCAACAGCTT
CGGTGGAGCCGGCAAGAAGGACGGACAGCGTTTGAGGCAACATGGCGACT
ACAGCGGGCATTGCACTTACACAATGCCGCAGTACGCACATGTGACTCCG
CCCCTCCCATGCGGTGGCAGCAGCCTGCATCACCCATGTTGCAGATAGAT
GAGGGTTGAGAGTGCTACGGCGGGCATCGCACTTACACAATGCCGCAGTA
CGCACACGAGACTCCGCCCCTCCCGTGCGGTGGCAGCAGCCTGCATCACC
CATATTGCAGATAGATGAGGGTTGAGTGCTTTGAGCACTGACATGGCGCA
GCAGCCAGAAACATGAATTATGGGACTTGCAAACAAGTCCTCACCACCTC
GACAAGCGTTAGAATTGATGCAGCGCTTTGACCAACGAGCATGTGGCCCT
CGGCCAAATAGCATGTGACCAACAGTAGCAGGCGATGTTCTTGGCGCATT
CATCAAACATTAGCGGACACGGATAACATCATGTAGAGAAAGAGGCACGC
GGCAGCACTTCGGGCAAGAAACCGCAGCCTGAGCGCTTGGCGAGTACAAA
CATTTCTCGCGTTGGCGTTTCAACTCTGTTAATGTGCAGGTTTCCTCTGA
AGTTTTGCGCTGTGCCATTGTGTCATATGTGTCATGAAACGCTTTGTTCT
GTGTTCCGACTGCTGCACATGTGATGAGCCAGATGCATGGGTATGACAGC
AATATGAGCTCACTTCATTCTCTGAGGTCCGTTGTGCAGTCTCGTTGGTT
CAGGAGTGACTGTGTACCACGTCAGTATTCAGGGCATTTGCACCCGCGCG
CATAGCCGCGCCGCTGTGATTTTTCTTGAGTTTATGGTGTAATGGATTCC
TG

protein sequence of jgi.p|Trimin1|348584

>Trimin1|348584|estExt_Genemark1.C_Ctg_270074 ID=Trimin1|348584|estExt_Genemark1.C_Ctg_270074|Name=jgi.p|Trimin1|348584|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=214bp
MDLADIPAAIRIDLASGMGSGLDVIRLVNPEIPSNQASSAFKRLATELPD
VASIAFGDLVRRVVQPPAHDDGALIVARPMSEDDPSVATPLAQIFAENTY
WKRDQDLMEEAIRTADLYCGTAKEHRWNCLCFNTTFTFGVLSLTLKLQLQ
SAHCASRRCRGRRKVQWRAARAGRWSRGACKRAVSACASVARQLTAVAAA
AFGSAGRGAVAFF*

mRNA from alignment at Contig_27:681634..691256+

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6952 ID=mRNA_6952|Name=jgi.p|Trimin1|348584|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=9623bp|location=Sequence derived from alignment at Contig_27:681634..691256+ (Tribonema minus UTEX_B_3156 )
ATGGACCTGGCTGATATCCCCGCCGCCATTCGCATCGATCTCGCTTCGGG
GATGGGCAGCGGGCTTGATGTCATACGCCTCGTGAATCCTGAGATACCCT
CAAACCAGGCGTCTTCCGCCTTCAAGAGGCTGGCAACAGAGTTGCCAGAC
GTGGCGTCGTCCTGCTGCCAACTCCGAATCAACGGCAATGGCAAACTCAC
TCCGTGCGCTGACGCACAAACGCTGGTGGAAATTGTTTGGTCGCTGCCTG
GCAAGCCAGCCCGCGCATTTCAGCGTACTTCGGCGACGACTGTGTGCCGC
GTTCTTGGCGGGGATGTCAGCTTGGTCGATGAGGTTGAGGGGCGGTGCCG
TGCGCTGCAGGCGACAGAAGTGGGTCGCGCCGCGCAAGACTTCCTGATCG
GTGACGGAATTCCTTAAGCGTCGAAGTGTCGAGGGAGCTGCCTGCGGAGC
TACAGTTGGCCACTCCCGAGCAGCGGACCTTGTTAGTTGCGAGTTGGATG
CATGAGCGCAGACTGGCGCTGATTGACCGTGAGAAGACTCAGCAGCTGGC
TTTGATCAAGAATGGTTTTGACCTCCTCGGCAGTTTCGGTGTCGCTGACG
CGCGTGACAGGATCGCCTTCGGAGACCTGGTGCGCCGTGTTGTACAGCCC
CCTGCACATGATGACGGCGCACTCATTGTCGCACGGCCAATGAGCGAGGA
TGACCCGAGCGTGGCGACGCCCTTGGCGCAGGTTGCGCACCGAGGCCCCG
AATGCACTCGGTCGCAACCGAGATGGGTGCCCGCATCAAGGCAGGCACCG
AGTGTGTGATCGGGAAGAAGGTGAAGGCTTTGTACACCATCAAGTACGGC
ACGGCTGCGGCTGCGGCGATCCCAAAGCGAAGTATTCCTTTTCGGGGCCA
GATATTCGCTGAGAACACATACTGGAAGCGCGATCAGGACCTCATGGAGG
AGGCGATCCGCACGGTAACCATGCTGAACCGCTGAGACACAACAAGTGCC
GATTGTCGACTCTGTCATCCAGCGCCGGCATCTTCACACCTGGGCTTTAG
TCCTCTCAAATGACACCATTGTCATGGTGAAAAATCTTCAGCAAAGTGTG
AGTGCAATACGGAAACCTTGAAGTCCATGGTAATGGTTCTTGTTGGCAGC
CTGAGCGTCCACTGCATTCTTCACGTTCACCTGGGACACCCTTGCCCATC
AAGTGCGCAGCTGCGTGTTACCATATCTTTATTGCGACAGCGAGCTTGGC
ATCAGCCATCCTGACTCCTTCGCTCTAACACATGGAACTGTCACGTTTGT
TGCGCACAACAGTTAAACTGTTACTGAGAGCATGCAACCTCAGGCTGCGC
AGGCATCAACTCGCTAGAAGTGACTAATGAGTACCGTCGGTTTCAGATTC
GCTGATCACGTGCAGAGTGGCGACATTAGCACGCGGCAAATTCTGATTCT
GCCCCTTAGGATAATGAAAACTCTTAGGCTAGGCGCAGTCCTGTCCTGGC
CCTGACCTCTTAGACTGCTAGTAGTACTCCTGATCTTAACCCTAATAGTA
TCTTCGGCGACGCAGCGCGCACATACACCACCAGCCGAGATGAGCAAGGC
AGGATGAGGGTTCGGGGTTGGCAACAGAAAGCAGCGCTCCTCCAGATCCA
GAACACATATGTCATGACAGCTTGCAGGGTTGAAGTGGTACGCCGCACTC
ACGCTCAGCTGAGCCAGTGGCACCTGACTCGGAGCTGCTGCGACGCCGCC
AGCTGCCCTGCAGGTTACAGAGTCTGACACATGTAGGCTTCGCAAGCTGC
CAGCTCATCGCTTGCACAAGCTGCGCGTTCACCATCGGGGTCCACCACTC
ACGACATATGGAATAGACTAAGTGAAGTGCCAGACAACTTGAAGGCGGCA
CTCGACTGAGCCAACGGCACCCGCCCTGATCTGCTGCCACGTCGCCAGCT
GCCACTCAAAGTTACAAGCACGTGTTGGCTCTATAACTTGCTAGCTCATT
GCTTGCGCAGCCTGAGGCTGCACCTTCATCAGCGGCGACCGCCAATGGTG
AAAGTTTGTGAGTTGAGTGTACGTCAGGCAGGCGCTTGAGCCAGCCTGTG
GCAACCAGACCGAGCGTCCGCGCGGCCGCTAGTTGCTGCATATTATATCA
CAGACGCACAAAGGTTGTCAAACTTACCTACTCGTCGCTTGCAACAAGCT
TCGCTATCACCACTGGCATCTGCCGGTTATGACAGCTCGCGGGATTGAGT
GTCCGGCAAGATGAGTCTTCGGCTGAGCCAGTGGCACCTGGCACTGACAG
TGGCACCTGGCATTGAGCTGCTGCAACTCCGCCAGCTGCCACGCAAGTTA
CAACACATGTAGGCTTCAAAAAGTACCAGCTCCTCGCTTGCACAAGCTGC
GCGTTCACCATCTGCCCCACGAATCACGACAGCCCGTGAGATTGGATGGC
CATGCCAAACAAGCACCCAGCTGGGCCAATGGCGTCCGCCCCACGCTGGT
GCGACATCGCCAGCTGCCGTGCAGATTGCAGACACATGTAGGCCCCATGA
ATGACCAGCTCATTGCTTGCGCAGACTGCGCGATCAGCGGCATCCGCCGG
TCATGACAGCTTGCGGGGTTGAAGTGGTATAATAATTCCAGACGCTGTCG
GACAAGCTCTCAGCTGAGCCAATGGCACCCGCCCAACTGTCTGTGCCGCC
GCCATATGCTGCACAAGTTACAGCTACATGTACATGAAAGACCTGCTCAT
TGGTTGCTTAGGGGGCGTTTTCACCAGTGGCATCCGCCGATCGCAACAGC
TTGCGAGGTTGAAGTGGTGTGGCAGACAAGCGCTCAACTGAGCCAATTGC
ACCCGGCGCCGGAGCCTCTGCGCCGCCGAAAGTTGCCGCACACGTTACAG
GGACAAGCATGTCCCATGAATGACCATCCCGTCGCTTGCACAAACTGCGC
ATTCACTTCCGGTTACCGCTGGTCATGACAGCTCAAGTGTAGAAGTGCTA
CTCCAGCGTCAGACAAGCGCTCAGCGGAGCCAGTGGCATTCGAGCTGGAG
CTGCTGCGATGTCGCCGGTCGCCACTCAGGTTACAGACACATGCAGGTTT
CATACACATCATCGCTTGCACAAGCTGCGCAATTCACAGTCGGCGGCCAC
CAGTCATCCCAGCTCCCGAAGTTGGATTGCTATGCCAGGATAGTGTTAGC
TGAGCCAATGACACGCGATTAGGCCTAAGTGATAGGCCAGCAATGCACTA
CACGTCGTTTGCGGTTTGCGGTTTGCGATGAGACCTCGTCCTGAATGTCT
GACTGGAATAGCAAAGCACAATACGTCGTTGGTGGTTTGCGATTTACGAT
TAGACCTGAGTCCTGAATATCTGCAGCAGGCCAGCAAAGCGCGGTACGTC
GTTAAACTTTGCGGTTTGCGATATGCGATTAGACCTGAGTCCTGAACATC
GGCGGCAGGACAGCAAAGCACTATACGTCGTTTACCGTTTGCGAGTTGCG
ATTAAACCTGAGTCCTGAACATCTGCAACAGGACAGCATAATGCGCTGTG
CGTCATTTGCGGTTTGCGATTTGCGATTAGACCTGATTCCTGAAAATCTG
CAGCAGGACAGCAAAGCGCAGTACGTCGTTTGCGGTTTGCGATTTGCGAT
TAGACCTGAGTCCTGAAACATCTGCGGCAGGACAGCAGAGCGCTATCTGC
GGCAGGACAGTAGAGCGCTATGCGTCGTTTGCGGTTTGCGATTTGCGATT
AGACCTGAGTCCTGACCATCTGCGGCAGGACAGCATAATGCGCTATGCAT
AATGCGCTATGCGTCGTTTGCGGTTTGCGATTTGCGATTAGACCTGAGTC
CTGACCATCTGCGGCAGGACAGCATAATGCGCTATGCGTCGTTTGCGGTT
TGCGATTTGCGATTGGACCTGAGTCCTGCACATCTGCAGCAGGACAGCAA
AGCGCGGTACGTCGTTTGCGGGTTGCGATTTGCGATTAGAGCTGAGTCCT
GAACATCTGCAGCAGGACAGCAAAGCGCGGTACGTCGTTTGCGGTTTGCG
GTTTGCGGTTTGCATTAGTCCTGAACAACTGCAGCTGGACAGCAAAGCAC
TTTACGTCGTTTGCGGTTTGCGATTTGCGATTAGACCGGAGTCCTGAACA
TCTGCAGCAGGACAGCATAATGCGCTATGCGTCGTTTGCGTTTTGCGATT
TGCGATTAGACCTGAGTCCTGAACATCTGCGGGAGGACAGCAAAGCGCTA
AACGTCGTTTGCGGTTTGCGATTTGCGATGAGACCTGAGTCCTGCAACCT
GCGGAGACACCACAGCGCTATACGTCGTTTGCGGTTTGCGATTTGCGATT
AGACCTGAGTCCTGAACATCTGCGGTAGGGCAGCAAAGCGCTATGCGTCG
TTTGCAGTTTGCGATTTGCGATTGGACCTGAGCTCTGCAACCTGTGGAGA
CAGCAAAGCGCTATACGTCGTTTCCTGTTTGCGATTTGCGATAAGACCTG
AGTCCTGAACATCTGCAGCAGGACAGTATAGATATGAGTCCCAAACATCT
GCGGCAGGACAGCATAGCGCTTAAACGACGTTTGCGGTTTGGGATTTGCG
ATTAGACCTGAGTCCTGCAACCTGCTGAGACAAGGCGCTATACGTCGTTT
GCTGTTTGCGATTTGCGATGTCGTTTGCTGTTTGCCATTTGCGACGAGAC
CTGAGGCCTGAACATCTGCGGCAGGAGAGCATAGCGCTAACGTCGTTTGC
GGTTTGCGATTTGCGATTAGACCTGAGTCCTGCAACCTGCGGAGACAAAG
CGCTATACGTCGTTTGCGGTTTGCGATTTGCGATTAGACCTGAGTCCTGA
ACATCTGCTATCCGTCGCTTGCGGGTTGGGGCAATGCAAGTAGCGGTTTG
CGGGAATGCGATGTGCGAGTAGATCTTTGAGTCCTGAACATCTGCGGCAG
GACAGCATAGCGCTGAACGTCGTTTGCGGTTTGCGATTTGCGATTAGACC
TGATTCCTGCAACCTGCGGAGACAGCAAAGCGCTATACGTCGTTTGCGGT
TTGCGATTTGCGATTAGACCTGAGTGCAGAGCCCATGTTTGGGCAAGCCT
GGCCCAAATACCTTTTGGGCCAGGTAGGCCACGTCATCTTGCTGAGAACT
GCATTGCAATGCCGCACCCGAAGTGGCACTCTTTGTGCCCCAGCAAAGTG
CCCCTGGTGGCATAGGACATCTTTTACACCAGCAGAGCGATGGGCGAACG
GCTTGATGCCCACGGAGCATGCTTGGAGCCTGCATTGATGCGCTGCCACT
CTGTGCAGCTCTCCAGGTAAGGCGCCATGCACATGCACCCTGGGCAGCAC
CCAACTGTCATGTGGCCGCTGTATGCTGCAGCGTGTGCTCACGGTCGGGC
AAGGCCAGTCAGGCTTACAGTAATACACCTCCCGCCGCGTGAAACGCACC
GCAAGTGTGTCAGCAGGTCATGCTGATTTCGTGATCGAGCCACAGCTCTC
CTCACACGGCTGTCAGGTGAGCAGATCATTAGATGCTACAATAGGTGAAC
AACTTGAATTCATCTCTGTTGAGAATTGTGTCGTCACGTATCGCATGCAA
AAGCGTGCTCGAAAACGGTAGCCTGGTCAATGGCACAAAGCAGATGTCAG
AGCACTCAGTGCATTCGCCAAGGGTTAAAGAGAGCAATTGCAGCACTCTG
CAAGGTGAAAGCCCATTGATAAGGAGCATAGGTGTGCTTCCAGGCACACT
GCATGGTCATGCGCTTGTTTTGCGTAGTGCATCTCAGGGTGAACGCGCTA
TGCAATCTGGCTTAAGTGGCCACCAGATACATTAAGCTCTGGATGCTGTA
CAAAGGACTGTGCTACGGTAGCATCTACCATGGGGTTGTTGCACTCAATT
AGCGAAGATATCATGTCGTACCATGTGATCGACACGCTCCCTGCGGTACG
CGTATAACGCCGATGCCTCATGGTTTGTGAACTCATGCTCTGGAATTAGC
AGCATAAATGATAACCCATCGCCTATCAGCCTTTTCTGTGTGTGTAGTGT
GAGCACAAATGACCTCAGCAGGTGTTCACTTGTCAAAGATATGTAATAAC
CCATCGCCTATCGCCTTTATTATGTGTGTAGTGTCATGACCTTGGCAGGT
GTTCATGCACAGTGCTGTACGCAGCTACAAAGGTGTACGCAGCTTGACCT
CTTCTGTGTCGTTAACTTAATCGATTGTTTCCTTTTTGTTCTCTGTTTTT
GTTGTTCCTTCGTAAAATTGCAAGTAGGGCATCTTCCGTATGGCGAGCCA
CTGAATGCAAATGTTGACATCAAAGGTGAGAGCAGGTGAGCAGCGATAGC
ATGTGAATACAGACTGCGGTGTTTGATCTCAGTCAGCGCTTCTGTGGCTG
GGGACAACCCTTCCGCTCCACAGTGCCTACCTACATGCTCTGAATAATGC
TCCACTCCTCTTTTTGCGTGCTGCTCATGAGTACTATGTGGCTGTGATCA
GTCTCTTGCTGCGACCATTGTGCAAGCATGTGAGCATCATATGCTTCAAT
GCTAAATCACGTAGTTTGAAGTTTGAAGTGAAGTAGCAGCTGTGCTACTT
TGAAGTAGTAGGTGTTCTGCACCTGCAGTGCTCTCGCGCCTTTTCAGATC
GTGAGCCACACCTGTGCTGTGTTGTCACATCTCCGCTGAGCATCGCTGTC
CGTGTGAGTGCTGCAAACTTGCCTTGCGCATCTGCATGCCAATCCTGCCA
CTTGTAATACCCAGAAGCGCACGACAGCTGTTGCACTTTACGAGCCATTG
TAACTAGAGTGTCGTGTGCACCTTTTGCAGGCGGATTTGTATTGCGGGAC
TGCCAAAGAGCACCGCTGGAACTGCCTGTGCTTCAACACCACCTTCACGT
TCGGCGTGCTCTCGCTAACGCTCAAGCTTCAGCTGCAATCGGCACATTGC
GCCTCGCGCCGCTGCCGAGGACGCCGCAAGGTACAATGGCGCGCTGCCCG
CGCTGGGCGATGGAGCCGAGGCGCGTGTAAGCGTGCTGTCAGCGCTTGCG
CTTCCGTGGCGAGGCAACTGACCGCAGTGGCGGCCGCAGCGTTTGGCAGC
GCCGGCAGGGGCGCCGTGGCTTTTTTTTAGCTGCGTCAGGTAGGCGACAT
ATCGGTGCGTTCCGGCACAACACTGGTCAAAGCGCATCGTCACTGCCATG
CCTGGACAGTGGTGGGTAATTATGCGCCGCGTCATGCGCCAGTAAGCTCA
GCGCTGCGTTTCACTGCACCTGCACTTGTGCAGCAATGCCGGGCTGCTGT
ACCGCTGGGCGCCCGTGTGTCACTTTACTGCAGCGTTGTGGAACCTGGTG
CACGGGAGCACGTGTGCAGCGTGCACACAACGCCGTGCTCGCCAAGTTGG
TCATCATGTGCGTACCAGGAATGCGTGGGCGGAATCGTAGCAGTAGATGA
AGGAGCGCGGCAGTGAGGCACGACGCCTGCTGAGAAGCGCTCGCAGGTGC
AGCGCTGCGTTACTCAGCATTATGTATGCGGTGCTCGTGGCATATGGTTC
TGAGCCACTGCATCAATTGGAGCATTGTTGGTGATTACGGACCTTGGCGC
TTGGTCTTGTCAGCACTGCTCACTGTGGCCACGCGTCATCGCAGATGTGT
TTGAGGTGTTGTCACTCACTGATGGCATACATCACACAATACCCGCTAGT
GGCTGCACTGGTTAGGGCCACACTGTTGTTTTCAATGGCATCTTCCACGC
CACTAGCTGAGCCAATTGGCAGCAGGCAGTTGCTCCCGAAGTCCATTGTC
AATTCGCAGGTGAACTTTTGTTGACAATTTTACCCTCACCATACCTAGCC
CTCCACCCTCCTTGCATACACAGGTTCCGACTGACATATTTGCCACGACA
GCAATAATTGATGATGCATTCTGCGCCACTTCAAGCAAGAAGCTTTACGG
GCAACGTGCGCTCAATGCCGGCACCGCCATCGCCCGCGCCTCGTCGGCGC
CCCACTTGGTGATGCTGAGGTAAGAAAGTGCGATGAGCTTATGCCGGCAT
TTTCTTGATGCGCCATTCAGCATGCACGTTGACATGCATTGCACGCTTAA
ATGTTGGCAGCAACCATGTGTGAAGCACGTGCAATATAGATCCGACCTTG
ACCACTGGGTACCCTCCTTGTCAATGAGCGTAATGCGCACTCGAGGTTGA
CAGTTTGGCGCTGCCTGTGGTGGCGAGCTGTGGGCGAGGGCGGATCGCGG
AGTAATCAACACTAATTGCAACCTTACGGCTTGGATGTGCCTATGGTTCT
TTTACGTCGTAGGGCGTGCTGTATTGTGGTCTGCTCTGATGCTTCACCGT
ACACCGCGTGCGCATGACCTGAGCGCATATAGCATGCACATCTGTACTTC
AGTGAATGTACGCACACAAGTGCTTCTGAAGTACGACTTTGTTGAACGTT
GAACGTCCTTTCAAAACACAAGGCTCATGGGGTATGTCCCTGCTGCAGTC
GCTGGGGCAATGTTCATGAGTCGTGCGCAGATAATTCACTGAGCCTGCTT
GCTGTGTGCTTGCAACAGGGGGCGGTGTCCGTAATAATGGCGGCTGCTGT
GGCGCCGCCGGTGCAACATCAATGTAGTGCTGACGACAGCGGCGGTTGCG
GCGCCTGGGCTGCCGCCACCATACCTGGTGTTCACAGCGCACGCGTTGGC
AAATGCACAGGCATGGACACCGAATGCAGCAGCTTCAAATTTTCTCAGAA
GGACCTGGTGGGCAACAGCTTCGGTGGAGCCGGCAAGAAGGACGGACAGC
GTTTGAGGCAACATGGCGACTACAGCGGGCATTGCACTTACACAATGCCG
CAGTACGCACATGTGACTCCGCCCCTCCCATGCGGTGGCAGCAGCCTGCA
TCACCCATGTTGCAGATAGATGAGGGTTGAGAGTGCTACGGCGGGCATCG
CACTTACACAATGCCGCAGTACGCACACGAGACTCCGCCCCTCCCGTGCG
GTGGCAGCAGCCTGCATCACCCATATTGCAGATAGATGAGGGTTGAGTGC
TTTGAGCACTGACATGGCGCAGCAGCCAGAAACATGAATTATGGGACTTG
CAAACAAGTCCTCACCACCTCGACAAGCGTTAGAATTGATGCAGCGCTTT
GACCAACGAGCATGTGGCCCTCGGCCAAATAGCATGTGACCAACAGTAGC
AGGCGATGTTCTTGGCGCATTCATCAAACATTAGCGGACACGGATAACAT
CATGTAGAGAAAGAGGCACGCGGCAGCACTTCGGGCAAGAAACCGCAGCC
TGAGCGCTTGGCGAGTACAAACATTTCTCGCGTTGGCGTTTCAACTCTGT
TAATGTGCAGGTTTCCTCTGAAGTTTTGCGCTGTGCCATTGTGTCATATG
TGTCATGAAACGCTTTGTTCTGTGTTCCGACTGCTGCACATGTGATGAGC
CAGATGCATGGGTATGACAGCAATATGAGCTCACTTCATTCTCTGAGGTC
CGTTGTGCAGTCTCGTTGGTTCAGGAGTGACTGTGTACCACGTCAGTATT
CAGGGCATTTGCACCCGCGCGCATAGCCGCGCCGCTGTGATTTTTCTTGA
GTTTATGGTGTAATGGATTCCTG

Coding sequence (CDS) from alignment at Contig_27:681634..691256+

>mRNA_6952 ID=mRNA_6952|Name=jgi.p|Trimin1|348584|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=642bp|location=Sequence derived from alignment at Contig_27:681634..691256+ (Tribonema minus UTEX_B_3156 )
ATGGACCTGGCTGATATCCCCGCCGCCATTCGCATCGATCTCGCTTCGGG
GATGGGCAGCGGGCTTGATGTCATACGCCTCGTGAATCCTGAGATACCCT
CAAACCAGGCGTCTTCCGCCTTCAAGAGGCTGGCAACAGAGTTGCCAGAC
GTGGCGTCGATCGCCTTCGGAGACCTGGTGCGCCGTGTTGTACAGCCCCC
TGCACATGATGACGGCGCACTCATTGTCGCACGGCCAATGAGCGAGGATG
ACCCGAGCGTGGCGACGCCCTTGGCGCAGATATTCGCTGAGAACACATAC
TGGAAGCGCGATCAGGACCTCATGGAGGAGGCGATCCGCACGGCGGATTT
GTATTGCGGGACTGCCAAAGAGCACCGCTGGAACTGCCTGTGCTTCAACA
CCACCTTCACGTTCGGCGTGCTCTCGCTAACGCTCAAGCTTCAGCTGCAA
TCGGCACATTGCGCCTCGCGCCGCTGCCGAGGACGCCGCAAGGTACAATG
GCGCGCTGCCCGCGCTGGGCGATGGAGCCGAGGCGCGTGTAAGCGTGCTG
TCAGCGCTTGCGCTTCCGTGGCGAGGCAACTGACCGCAGTGGCGGCCGCA
GCGTTTGGCAGCGCCGGCAGGGGCGCCGTGGCTTTTTTTTAG