mRNA_6930 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|133577
Unique NamemRNA_6930
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|133577 vs. uniprot
Match: A0A835Z2A9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2A9_9STRA)

HSP 1 Score: 182 bits (463), Expect = 1.360e-58
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 1
Query:    1 VTRDDIVCISTQLGYVPPNLISVAARNRDGAPTVLLLYPVSAPVCTRRNKVELQPFPTIYWLCCPQLKADVSRLEVAGLVQEFEARL 261
            VTRDDIVCISTQLGYVPPNLISVAARNRDGAPTVLLLYPVSAPVCTRRNKVELQPFPTIYWLCCPQLKADVSRLEVAGLVQEFEARL
Sbjct:    1 VTRDDIVCISTQLGYVPPNLISVAARNRDGAPTVLLLYPVSAPVCTRRNKVELQPFPTIYWLCCPQLKADVSRLEVAGLVQEFEARL 87          
BLAST of jgi.p|Trimin1|133577 vs. uniprot
Match: A0A7S3YI93_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YI93_HETAK)

HSP 1 Score: 92.4 bits (228), Expect = 2.900e-21
Identity = 46/95 (48.42%), Postives = 59/95 (62.11%), Query Frame = 1
Query:    1 VTRDDIVCISTQLGYVPPNLISVAARNR--------DGAPTVLLLYPVSAPVCTRRNKVELQPFPTIYWLCCPQLKADVSRLEVAGLVQEFEARL 261
            ++  D+  IS QLGY P NL+ +AAR          +  PTVLLL+P++     R N  E QPFPTIYWLCC +LKA VS LE  G ++EF+ RL
Sbjct:   43 ISEADLKHISFQLGYTPSNLLEIAARGTRNEATGGDNARPTVLLLHPLARAASKRDNTDEPQPFPTIYWLCCQELKARVSELERVGKIEEFQQRL 137          
BLAST of jgi.p|Trimin1|133577 vs. uniprot
Match: D7FHT2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHT2_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 3.030e-19
Identity = 43/80 (53.75%), Postives = 53/80 (66.25%), Query Frame = 1
Query:   25 ISTQLGYVPPNLISVAARNRDGAPTVLLLYPVSAPVC-TRRNKVELQPFPTIYWLCCPQLKADVSRLEVAGLVQEFEARL 261
            I  QLG+ P N+ S+AAR   G PTVL LYP++  +   R    E QPFPT+YWL CP LKA VS+LE  GL+ E+E RL
Sbjct:   34 IHRQLGFRPTNVHSIAARAMTGEPTVLRLYPLAVSLKGARARNAERQPFPTMYWLSCPSLKAAVSQLENQGLILEWERRL 113          
BLAST of jgi.p|Trimin1|133577 vs. uniprot
Match: A0A6H5JYJ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYJ7_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 1.350e-18
Identity = 43/80 (53.75%), Postives = 53/80 (66.25%), Query Frame = 1
Query:   25 ISTQLGYVPPNLISVAARNRDGAPTVLLLYPVSAPVC-TRRNKVELQPFPTIYWLCCPQLKADVSRLEVAGLVQEFEARL 261
            I  QLG+ P N+ S+AAR   G PTVL LYP++  +   R    E QPFPT+YWL CP LKA VS+LE  GL+ E+E RL
Sbjct:   34 IHRQLGFRPTNVHSIAARAMTGEPTVLRLYPLAVSLKGARARNAERQPFPTMYWLSCPSLKAAVSQLENQGLILEWERRL 113          
BLAST of jgi.p|Trimin1|133577 vs. uniprot
Match: A0A7S2FGU9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FGU9_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 3.740e-17
Identity = 41/89 (46.07%), Postives = 53/89 (59.55%), Query Frame = 1
Query:    4 TRDDIVCISTQLGYVPPNLISVAARNR-DGAPTVLLLYPVSAPVCTRRNKVELQ--PFPTIYWLCCPQLKADVSRLEVAGLVQEFEARL 261
            T  D+  I + LGYVPPNL+ VAAR++ D  P V+  YP+      RR K E    PFPT+YWL C +L+  +S LE  G V  FE R+
Sbjct:   16 TAADLAAIFSSLGYVPPNLLKVAARSKVDERPIVIKTYPLGGGAVRRRVKAEADRTPFPTLYWLSCDKLQTAISELERRGFVATFEDRV 104          
BLAST of jgi.p|Trimin1|133577 vs. uniprot
Match: A0A7S0XVY0_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0XVY0_HEMAN)

HSP 1 Score: 69.3 bits (168), Expect = 3.070e-13
Identity = 33/87 (37.93%), Postives = 50/87 (57.47%), Query Frame = 1
Query:    1 VTRDDIVCISTQLGYVPPNLISVAARNRDGAPTVLLLYPVSAPVCTRRNKVELQPFPTIYWLCCPQLKADVSRLEVAGLVQEFEARL 261
            ++ +D   ++ QLGY P N + V +R+  G P  L  YP+   V T+    +  PFPT+YWLC P  K ++S+LE  G +Q  + RL
Sbjct:   43 ISEEDWSSLTDQLGYRPINALKVVSRSSSGHPAALECYPM---VPTKNG--DPMPFPTLYWLCDPDAKVEISKLEYMGWIQRLKERL 124          
BLAST of jgi.p|Trimin1|133577 vs. uniprot
Match: A0A7S3PU01_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PU01_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 3.830e-13
Identity = 43/91 (47.25%), Postives = 53/91 (58.24%), Query Frame = 1
Query:    1 VTRDDIVCISTQLGYVPPNLISVAARNRDGAPTVLLLYPVSAPVCTRRNKVE--LQPFPTIYWLCC--PQLKADVSRLEVAGLVQEFEARL 261
            +T +D   +  QLGY+P NL+SVAAR   G P VL  YP++     R+ K E  L PFPT YW     P  KA VS LE  G V +FE+RL
Sbjct:   47 LTDEDAQKVRDQLGYIPCNLVSVAARRSTGDPLVLRTYPLNGGAKRRKLKAEGDLTPFPTHYWFITSNPVSKA-VSALEQKGYVAKFESRL 136          
BLAST of jgi.p|Trimin1|133577 vs. uniprot
Match: A0A8J6C647_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6C647_DIALT)

HSP 1 Score: 72.4 bits (176), Expect = 4.320e-13
Identity = 37/92 (40.22%), Postives = 52/92 (56.52%), Query Frame = 1
Query:   13 DIVCISTQLGYVPPNLISVAARN-RDGAPTVLLLYPVSAPVCTRRNK--------VELQPFPTIYWLCCPQLKADVSRLEVAGLVQEFEARL 261
            D+  ++  +G+ P N  SVAAR+   GAPTVL +YP+SA +   R            +QP+PT++WL CP L+A VS LE  G +    A L
Sbjct:   17 DVDAVTRHIGFCPWNAHSVAARDVATGAPTVLRMYPLSAELSVSRGSSAAARGTLTRMQPWPTLFWLVCPLLRAQVSHLEAVGFIPLLRAAL 108          
BLAST of jgi.p|Trimin1|133577 vs. uniprot
Match: A0A482SU83_9ARCH (DUF501 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SU83_9ARCH)

HSP 1 Score: 70.1 bits (170), Expect = 7.200e-13
Identity = 33/88 (37.50%), Postives = 54/88 (61.36%), Query Frame = 1
Query:    7 RDDIVCISTQLGYVPPNLISVAARNR-DGAPTVLLLYPVSA--PVCTRRNKVELQPFPTIYWLCCPQLKADVSRLEVAGLVQEFEARL 261
            R+ I  I  QLG+ P NL+ V+  +  D  P +L LYP++   P   +  + ++ PFPT++W+ CP L A++S+LE+ G +Q+   RL
Sbjct:   67 RESIYTIMRQLGFTPLNLVDVSYNHPYDHRPLILQLYPLNVRDPTLFQETEQDIIPFPTMFWVSCPVLHANISKLEMDGWIQKLSDRL 154          
BLAST of jgi.p|Trimin1|133577 vs. uniprot
Match: A0A1B8P735_HALEL (DUF501 domain-containing protein n=4 Tax=Halomonas TaxID=2745 RepID=A0A1B8P735_HALEL)

HSP 1 Score: 68.9 bits (167), Expect = 1.250e-12
Identity = 33/82 (40.24%), Postives = 51/82 (62.20%), Query Frame = 1
Query:   16 IVCISTQLGYVPPNLISVAARNRDGAPTVLLLYPVSAPVCTRRNKVELQPFPTIYWLCCPQLKADVSRLEVAGLVQEFEARL 261
            +  I+ QLG  P  + ++AA + +G P VL + P+          V+  PFPT+YWLC  +LKA++SR+E AG+++  EARL
Sbjct:   14 LAIITEQLGRPPRGIEALAATDGEGTPLVLRMAPI----------VDGAPFPTLYWLCSERLKAELSRIEAAGVIKHLEARL 85          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|133577 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z2A9_9STRA1.360e-58100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A7S3YI93_HETAK2.900e-2148.42Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
D7FHT2_ECTSI3.030e-1953.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JYJ7_9PHAE1.350e-1853.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2FGU9_9STRA3.740e-1746.07Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S0XVY0_HEMAN3.070e-1337.93Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S3PU01_9STRA3.830e-1347.25Hypothetical protein (Fragment) n=1 Tax=Chaetocero... [more]
A0A8J6C647_DIALT4.320e-1340.22Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
A0A482SU83_9ARCH7.200e-1337.50DUF501 domain-containing protein n=1 Tax=archaeon ... [more]
A0A1B8P735_HALEL1.250e-1240.24DUF501 domain-containing protein n=4 Tax=Halomonas... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_27contigContig_27:489739..489999 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|133577|gw1.27.27.1
DescriptionProtein of unknown function (DUF501)
COG categoryS
Max annot lvl1236|Gammaproteobacteria
EggNOG OGsCOG1507@1|root,COG1507@2|Bacteria,1QSSM@1224|Proteobacteria,1RWB3@1236|Gammaproteobacteria,1JAQF@118884|unclassified Gammaproteobacteria
Evalue1.03e-13
Seed ortholog1492922.GY26_15495
Hectar predicted targeting categoryother localisation
TranscriptId133899
TrackFilteredModels1
ProteinId133577
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|133577gene_6930Tribonema minus UTEX_B_3156 geneContig_27 489739..489999 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6930_1exon_6930_1Tribonema minus UTEX_B_3156 exonContig_27 489739..489999 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6930CDS_6930Tribonema minus UTEX_B_3156 CDSContig_27 489739..489999 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|133577Trimin1|133577|gw1.27.27.1Tribonema minus UTEX_B_3156 polypeptideContig_27 489739..489999 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6930 ID=mRNA_6930|Name=jgi.p|Trimin1|133577|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=261bp|location=Sequence derived from alignment at Contig_27:489739..489999- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GTCACCCGGGATGACATTGTGTGCATAAGCACGCAGCTGGGCTACGTGCC
TCCCAATTTGATCTCTGTCGCTGCGCGGAACAGGGATGGTGCTCCCACTG
TGCTGCTGCTGTACCCGGTGTCAGCGCCCGTCTGCACACGGCGCAACAAA
GTGGAGCTGCAGCCCTTCCCCACCATTTACTGGCTGTGCTGCCCTCAGCT
GAAGGCCGATGTCAGCCGGCTGGAGGTGGCAGGCTTAGTGCAAGAGTTTG
AGGCCAGGCTG
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protein sequence of jgi.p|Trimin1|133577

>Trimin1|133577|gw1.27.27.1 ID=Trimin1|133577|gw1.27.27.1|Name=jgi.p|Trimin1|133577|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=87bp
VTRDDIVCISTQLGYVPPNLISVAARNRDGAPTVLLLYPVSAPVCTRRNK
VELQPFPTIYWLCCPQLKADVSRLEVAGLVQEFEARL
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mRNA from alignment at Contig_27:489739..489999-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6930 ID=mRNA_6930|Name=jgi.p|Trimin1|133577|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=261bp|location=Sequence derived from alignment at Contig_27:489739..489999- (Tribonema minus UTEX_B_3156 )
GTCACCCGGGATGACATTGTGTGCATAAGCACGCAGCTGGGCTACGTGCC TCCCAATTTGATCTCTGTCGCTGCGCGGAACAGGGATGGTGCTCCCACTG TGCTGCTGCTGTACCCGGTGTCAGCGCCCGTCTGCACACGGCGCAACAAA GTGGAGCTGCAGCCCTTCCCCACCATTTACTGGCTGTGCTGCCCTCAGCT GAAGGCCGATGTCAGCCGGCTGGAGGTGGCAGGCTTAGTGCAAGAGTTTG AGGCCAGGCTG
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Coding sequence (CDS) from alignment at Contig_27:489739..489999-

>mRNA_6930 ID=mRNA_6930|Name=jgi.p|Trimin1|133577|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=261bp|location=Sequence derived from alignment at Contig_27:489739..489999- (Tribonema minus UTEX_B_3156 )
GTCACCCGGGATGACATTGTGTGCATAAGCACGCAGCTGGGCTACGTGCC
TCCCAATTTGATCTCTGTCGCTGCGCGGAACAGGGATGGTGCTCCCACTG
TGCTGCTGCTGTACCCGGTGTCAGCGCCCGTCTGCACACGGCGCAACAAA
GTGGAGCTGCAGCCCTTCCCCACCATTTACTGGCTGTGCTGCCCTCAGCT
GAAGGCCGATGTCAGCCGGCTGGAGGTGGCAGGCTTAGTGCAAGAGTTTG
AGGCCAGGCTG
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