mRNA_6930 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|133577 vs. uniprot
Match: A0A835Z2A9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2A9_9STRA) HSP 1 Score: 182 bits (463), Expect = 1.360e-58 Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 1 Query: 1 VTRDDIVCISTQLGYVPPNLISVAARNRDGAPTVLLLYPVSAPVCTRRNKVELQPFPTIYWLCCPQLKADVSRLEVAGLVQEFEARL 261 VTRDDIVCISTQLGYVPPNLISVAARNRDGAPTVLLLYPVSAPVCTRRNKVELQPFPTIYWLCCPQLKADVSRLEVAGLVQEFEARL Sbjct: 1 VTRDDIVCISTQLGYVPPNLISVAARNRDGAPTVLLLYPVSAPVCTRRNKVELQPFPTIYWLCCPQLKADVSRLEVAGLVQEFEARL 87
BLAST of jgi.p|Trimin1|133577 vs. uniprot
Match: A0A7S3YI93_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YI93_HETAK) HSP 1 Score: 92.4 bits (228), Expect = 2.900e-21 Identity = 46/95 (48.42%), Postives = 59/95 (62.11%), Query Frame = 1 Query: 1 VTRDDIVCISTQLGYVPPNLISVAARNR--------DGAPTVLLLYPVSAPVCTRRNKVELQPFPTIYWLCCPQLKADVSRLEVAGLVQEFEARL 261 ++ D+ IS QLGY P NL+ +AAR + PTVLLL+P++ R N E QPFPTIYWLCC +LKA VS LE G ++EF+ RL Sbjct: 43 ISEADLKHISFQLGYTPSNLLEIAARGTRNEATGGDNARPTVLLLHPLARAASKRDNTDEPQPFPTIYWLCCQELKARVSELERVGKIEEFQQRL 137
BLAST of jgi.p|Trimin1|133577 vs. uniprot
Match: D7FHT2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHT2_ECTSI) HSP 1 Score: 85.1 bits (209), Expect = 3.030e-19 Identity = 43/80 (53.75%), Postives = 53/80 (66.25%), Query Frame = 1 Query: 25 ISTQLGYVPPNLISVAARNRDGAPTVLLLYPVSAPVC-TRRNKVELQPFPTIYWLCCPQLKADVSRLEVAGLVQEFEARL 261 I QLG+ P N+ S+AAR G PTVL LYP++ + R E QPFPT+YWL CP LKA VS+LE GL+ E+E RL Sbjct: 34 IHRQLGFRPTNVHSIAARAMTGEPTVLRLYPLAVSLKGARARNAERQPFPTMYWLSCPSLKAAVSQLENQGLILEWERRL 113
BLAST of jgi.p|Trimin1|133577 vs. uniprot
Match: A0A6H5JYJ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYJ7_9PHAE) HSP 1 Score: 85.1 bits (209), Expect = 1.350e-18 Identity = 43/80 (53.75%), Postives = 53/80 (66.25%), Query Frame = 1 Query: 25 ISTQLGYVPPNLISVAARNRDGAPTVLLLYPVSAPVC-TRRNKVELQPFPTIYWLCCPQLKADVSRLEVAGLVQEFEARL 261 I QLG+ P N+ S+AAR G PTVL LYP++ + R E QPFPT+YWL CP LKA VS+LE GL+ E+E RL Sbjct: 34 IHRQLGFRPTNVHSIAARAMTGEPTVLRLYPLAVSLKGARARNAERQPFPTMYWLSCPSLKAAVSQLENQGLILEWERRL 113
BLAST of jgi.p|Trimin1|133577 vs. uniprot
Match: A0A7S2FGU9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FGU9_9STRA) HSP 1 Score: 80.9 bits (198), Expect = 3.740e-17 Identity = 41/89 (46.07%), Postives = 53/89 (59.55%), Query Frame = 1 Query: 4 TRDDIVCISTQLGYVPPNLISVAARNR-DGAPTVLLLYPVSAPVCTRRNKVELQ--PFPTIYWLCCPQLKADVSRLEVAGLVQEFEARL 261 T D+ I + LGYVPPNL+ VAAR++ D P V+ YP+ RR K E PFPT+YWL C +L+ +S LE G V FE R+ Sbjct: 16 TAADLAAIFSSLGYVPPNLLKVAARSKVDERPIVIKTYPLGGGAVRRRVKAEADRTPFPTLYWLSCDKLQTAISELERRGFVATFEDRV 104
BLAST of jgi.p|Trimin1|133577 vs. uniprot
Match: A0A7S0XVY0_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0XVY0_HEMAN) HSP 1 Score: 69.3 bits (168), Expect = 3.070e-13 Identity = 33/87 (37.93%), Postives = 50/87 (57.47%), Query Frame = 1 Query: 1 VTRDDIVCISTQLGYVPPNLISVAARNRDGAPTVLLLYPVSAPVCTRRNKVELQPFPTIYWLCCPQLKADVSRLEVAGLVQEFEARL 261 ++ +D ++ QLGY P N + V +R+ G P L YP+ V T+ + PFPT+YWLC P K ++S+LE G +Q + RL Sbjct: 43 ISEEDWSSLTDQLGYRPINALKVVSRSSSGHPAALECYPM---VPTKNG--DPMPFPTLYWLCDPDAKVEISKLEYMGWIQRLKERL 124
BLAST of jgi.p|Trimin1|133577 vs. uniprot
Match: A0A7S3PU01_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PU01_9STRA) HSP 1 Score: 71.2 bits (173), Expect = 3.830e-13 Identity = 43/91 (47.25%), Postives = 53/91 (58.24%), Query Frame = 1 Query: 1 VTRDDIVCISTQLGYVPPNLISVAARNRDGAPTVLLLYPVSAPVCTRRNKVE--LQPFPTIYWLCC--PQLKADVSRLEVAGLVQEFEARL 261 +T +D + QLGY+P NL+SVAAR G P VL YP++ R+ K E L PFPT YW P KA VS LE G V +FE+RL Sbjct: 47 LTDEDAQKVRDQLGYIPCNLVSVAARRSTGDPLVLRTYPLNGGAKRRKLKAEGDLTPFPTHYWFITSNPVSKA-VSALEQKGYVAKFESRL 136
BLAST of jgi.p|Trimin1|133577 vs. uniprot
Match: A0A8J6C647_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6C647_DIALT) HSP 1 Score: 72.4 bits (176), Expect = 4.320e-13 Identity = 37/92 (40.22%), Postives = 52/92 (56.52%), Query Frame = 1 Query: 13 DIVCISTQLGYVPPNLISVAARN-RDGAPTVLLLYPVSAPVCTRRNK--------VELQPFPTIYWLCCPQLKADVSRLEVAGLVQEFEARL 261 D+ ++ +G+ P N SVAAR+ GAPTVL +YP+SA + R +QP+PT++WL CP L+A VS LE G + A L Sbjct: 17 DVDAVTRHIGFCPWNAHSVAARDVATGAPTVLRMYPLSAELSVSRGSSAAARGTLTRMQPWPTLFWLVCPLLRAQVSHLEAVGFIPLLRAAL 108
BLAST of jgi.p|Trimin1|133577 vs. uniprot
Match: A0A482SU83_9ARCH (DUF501 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SU83_9ARCH) HSP 1 Score: 70.1 bits (170), Expect = 7.200e-13 Identity = 33/88 (37.50%), Postives = 54/88 (61.36%), Query Frame = 1 Query: 7 RDDIVCISTQLGYVPPNLISVAARNR-DGAPTVLLLYPVSA--PVCTRRNKVELQPFPTIYWLCCPQLKADVSRLEVAGLVQEFEARL 261 R+ I I QLG+ P NL+ V+ + D P +L LYP++ P + + ++ PFPT++W+ CP L A++S+LE+ G +Q+ RL Sbjct: 67 RESIYTIMRQLGFTPLNLVDVSYNHPYDHRPLILQLYPLNVRDPTLFQETEQDIIPFPTMFWVSCPVLHANISKLEMDGWIQKLSDRL 154
BLAST of jgi.p|Trimin1|133577 vs. uniprot
Match: A0A1B8P735_HALEL (DUF501 domain-containing protein n=4 Tax=Halomonas TaxID=2745 RepID=A0A1B8P735_HALEL) HSP 1 Score: 68.9 bits (167), Expect = 1.250e-12 Identity = 33/82 (40.24%), Postives = 51/82 (62.20%), Query Frame = 1 Query: 16 IVCISTQLGYVPPNLISVAARNRDGAPTVLLLYPVSAPVCTRRNKVELQPFPTIYWLCCPQLKADVSRLEVAGLVQEFEARL 261 + I+ QLG P + ++AA + +G P VL + P+ V+ PFPT+YWLC +LKA++SR+E AG+++ EARL Sbjct: 14 LAIITEQLGRPPRGIEALAATDGEGTPLVLRMAPI----------VDGAPFPTLYWLCSERLKAELSRIEAAGVIKHLEARL 85 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|133577 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_6930 ID=mRNA_6930|Name=jgi.p|Trimin1|133577|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=261bp|location=Sequence derived from alignment at Contig_27:489739..489999- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GTCACCCGGGATGACATTGTGTGCATAAGCACGCAGCTGGGCTACGTGCCback to top protein sequence of jgi.p|Trimin1|133577 >Trimin1|133577|gw1.27.27.1 ID=Trimin1|133577|gw1.27.27.1|Name=jgi.p|Trimin1|133577|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=87bp VTRDDIVCISTQLGYVPPNLISVAARNRDGAPTVLLLYPVSAPVCTRRNKback to top mRNA from alignment at Contig_27:489739..489999- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_6930 ID=mRNA_6930|Name=jgi.p|Trimin1|133577|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=261bp|location=Sequence derived from alignment at Contig_27:489739..489999- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_27:489739..489999- >mRNA_6930 ID=mRNA_6930|Name=jgi.p|Trimin1|133577|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=261bp|location=Sequence derived from alignment at Contig_27:489739..489999- (Tribonema minus UTEX_B_3156 )back to top |