mRNA_6901 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|137190 vs. uniprot
Match: A0A835YY32_9STRA (Ankyrin repeat-containing domain protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YY32_9STRA) HSP 1 Score: 303 bits (776), Expect = 2.770e-104 Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 1 Query: 1 LFDFIPYYGAGDASVDGRVRAMVQAAGQEELCGIDHYGNTLLILAAQYKAGELMHAILAKDCIDVNAVNDAGACALHFACFSASLDVLVARALIANGSKVRVVERTYGCTPLHYAAGSGHVDLCKDLVAAGAIVATCDFHNYTAVDYARQA 453 LFDFIPYYGAGDASVDGRVRAMVQAAGQEELCGIDHYGNTLLILAAQYKAGELMHAILAKDCIDVNAVNDAGACALHFACFSASLDVLVARALIANGSKVRVVERTYGCTPLHYAAGSGHVDLCKDLVAAGAIVATCDFHNYTAVDYARQA Sbjct: 1 LFDFIPYYGAGDASVDGRVRAMVQAAGQEELCGIDHYGNTLLILAAQYKAGELMHAILAKDCIDVNAVNDAGACALHFACFSASLDVLVARALIANGSKVRVVERTYGCTPLHYAAGSGHVDLCKDLVAAGAIVATCDFHNYTAVDYARQA 151
BLAST of jgi.p|Trimin1|137190 vs. uniprot
Match: D7FMA5_ECTSI (Kinesin motor domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMA5_ECTSI) HSP 1 Score: 162 bits (410), Expect = 2.130e-43 Identity = 86/153 (56.21%), Postives = 107/153 (69.93%), Query Frame = 1 Query: 1 LFDFIPYYGAGDASVDGRVRAMVQAAGQEELCGIDHYGNTLLILAAQYKAGELMHAILAKD--CIDVNAVNDAGACALHFACFSASLDVLVARALIANGSKVRVVERTYGCTPLHYAAGSGHVDLCKDLVAAGAIVATCDFHNYTAVDYARQA 453 L +FIPY G GDA+ D VR+++ AA EEL G D YGNTLLILA QY+ L+ ILA+ IDV+AVN GACALHFAC+ S+ A L+ G++ VVE+TYGCTPLHYAAG+G V+LCK L+ GA T D + YTAVDYA+Q+ Sbjct: 120 LVEFIPYVGLGDATRDNMVRSILSAADAEELVGRDDYGNTLLILACQYRCKALVPLILARGGGAIDVDAVNSEGACALHFACYKDSVCAQTAVLLLERGAEPEVVEKTYGCTPLHYAAGAGDVNLCKRLIEKGAKANTWDLYQYTAVDYAKQS 272
BLAST of jgi.p|Trimin1|137190 vs. uniprot
Match: A0A482SRH0_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SRH0_9ARCH) HSP 1 Score: 139 bits (349), Expect = 2.590e-35 Identity = 70/151 (46.36%), Postives = 97/151 (64.24%), Query Frame = 1 Query: 1 LFDFIPYYGAGDASVDGRVRAMVQAAGQEELCGIDHYGNTLLILAAQYKAGELMHAILAKDCIDVNAVNDAGACALHFACFSASLDVLVARALIANGSKVRVVERTYGCTPLHYAAGSGHVDLCKDLVAAGAIVATCDFHNYTAVDYARQA 453 L FIP+YG GD + D VR+ + + E++ D YGNTLL+LA QY+ +L ++ K + NAVN AGA LHFAC+ S + +A+ L+ NG+ V E YGCTPLHY AGSG ++ CK ++ GA + D++NYT VDYAR+A Sbjct: 107 LLQFIPFYGQGDPANDSIVRSALSSLSIEDIDAKDEYGNTLLLLACQYRCEDLARIMINKGA-NPNAVNTAGASCLHFACYQDSSSLPIAKVLLQNGANPDVAESNYGCTPLHYCAGSGDLEFCKLILQYGAQINAYDYYNYTCVDYAREA 256
BLAST of jgi.p|Trimin1|137190 vs. uniprot
Match: A0A7S3HTU3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HTU3_9STRA) HSP 1 Score: 124 bits (312), Expect = 3.240e-30 Identity = 61/129 (47.29%), Postives = 86/129 (66.67%), Query Frame = 1 Query: 67 VQAAGQEELCGIDHYGNTLLILAAQYKAGELMHAILAKDCIDVNAVNDAGACALHFACFSASLDVLVARALIANGSKVRVVERTYGCTPLHYAAGSGHVDLCKDLVAAGAIVATCDFHNYTAVDYARQA 453 + A E++ D YGNTLL+LA QY+ +L+ +L K D NAVN +GAC LHFAC+ S + VA+ L+ +G+ V E T+GCTPLHY AG+G ++ CK L++ GA + D++NYT VDYA +A Sbjct: 2 LSALSVEDIDSQDEYGNTLLLLACQYRCEDLVRIMLNKGA-DANAVNSSGACCLHFACYRESASIGVAKILLKSGADPDVAESTFGCTPLHYCAGTGDIEFCKLLLSYGAQIGALDYYNYTCVDYASEA 129
BLAST of jgi.p|Trimin1|137190 vs. uniprot
Match: A0A7S2K2T0_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K2T0_9STRA) HSP 1 Score: 116 bits (290), Expect = 3.020e-27 Identity = 67/151 (44.37%), Postives = 89/151 (58.94%), Query Frame = 1 Query: 1 LFDFIPYYGAGDASVDGRVRAMVQAAGQEELCGIDHYGNTLLILAAQYKAGELMHAILAKDCIDVNAVNDAGACALHFACFSASLDVLVARALIANGSKVRVVERTYGCTPLHYAAGSGHVDLCKDLVAAGAIVATCDFHNYTAVDYARQA 453 L + +P++G GD S D VR ++ + L D GNT+LILA QY A +L+ ++ K C +VNA N+ GAC LHF C+S ++ V LI NG+ VVER YG TPLH+AA SG+ LC L AGA T D + YA+QA Sbjct: 185 LQEILPFFGQGDLSSDVIVRETIEKLPLDALEMPDRLGNTVLILACQYAAYDLIPLLIEKGC-NVNAQNNDGACCLHFPCYSDTVSVETVELLIDNGAYAEVVERQYGATPLHWAAASGNTFLCSLLANAGASPHTIDLSGCDPIAYAKQA 334
BLAST of jgi.p|Trimin1|137190 vs. uniprot
Match: A0A7S0XEW9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XEW9_9STRA) HSP 1 Score: 103 bits (257), Expect = 5.700e-24 Identity = 52/109 (47.71%), Postives = 71/109 (65.14%), Query Frame = 1 Query: 127 ILAAQYKAGELMHAILAKDCIDVNAVNDAGACALHFACFSASLDVLVARALIANGSKVRVVERTYGCTPLHYAAGSGHVDLCKDLVAAGAIVATCDFHNYTAVDYARQA 453 +LA QYK +L+ ++ K D NAVN+ G +LHFAC+ S + +A+ L+ G+ V E TYGCTPLHY AG+G + CK L+ GA T DF+NYT +DYAR+A Sbjct: 1 LLACQYKCEDLVRIMINKGA-DPNAVNNLGVSSLHFACYRESSSINIAKLLLQFGANPEVKESTYGCTPLHYCAGTGDLPFCKLLITYGAQTNTYDFYNYTCIDYAREA 108
BLAST of jgi.p|Trimin1|137190 vs. uniprot
Match: L1JCX3_GUITC (Uncharacterized protein (Fragment) n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JCX3_GUITC) HSP 1 Score: 48.5 bits (114), Expect = 9.800e-5 Identity = 33/85 (38.82%), Postives = 48/85 (56.47%), Query Frame = 1 Query: 190 DVNAVNDAGACALHFACFSASLDVLVARALIANGSKVRVVERTYGCTPLHYAAGSGHVDLCKDLVAAGAIVATCDFHNYTAVDYA 444 DVN V+ AG CALH+A ++DV V L+ + + V + + G T LH AA ++ CK L+AAGA D +A++YA Sbjct: 7 DVNEVDHAGNCALHYA----AIDVNVLNLLVNHAADVNMTNKV-GATALHEAAEKECIEACKLLLAAGADPDQQDKDGRSALEYA 86 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|137190 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_6901 ID=mRNA_6901|Name=jgi.p|Trimin1|137190|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=453bp|location=Sequence derived from alignment at Contig_27:269998..270450+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CTTTTTGACTTCATCCCTTACTACGGGGCCGGGGATGCCTCGGTTGATGGback to top protein sequence of jgi.p|Trimin1|137190 >Trimin1|137190|gw1.27.41.1 ID=Trimin1|137190|gw1.27.41.1|Name=jgi.p|Trimin1|137190|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=151bp LFDFIPYYGAGDASVDGRVRAMVQAAGQEELCGIDHYGNTLLILAAQYKAback to top mRNA from alignment at Contig_27:269998..270450+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_6901 ID=mRNA_6901|Name=jgi.p|Trimin1|137190|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=453bp|location=Sequence derived from alignment at Contig_27:269998..270450+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_27:269998..270450+ >mRNA_6901 ID=mRNA_6901|Name=jgi.p|Trimin1|137190|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=453bp|location=Sequence derived from alignment at Contig_27:269998..270450+ (Tribonema minus UTEX_B_3156 )back to top |