mRNA_6901 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|137190
Unique NamemRNA_6901
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|137190 vs. uniprot
Match: A0A835YY32_9STRA (Ankyrin repeat-containing domain protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YY32_9STRA)

HSP 1 Score: 303 bits (776), Expect = 2.770e-104
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 1
Query:    1 LFDFIPYYGAGDASVDGRVRAMVQAAGQEELCGIDHYGNTLLILAAQYKAGELMHAILAKDCIDVNAVNDAGACALHFACFSASLDVLVARALIANGSKVRVVERTYGCTPLHYAAGSGHVDLCKDLVAAGAIVATCDFHNYTAVDYARQA 453
            LFDFIPYYGAGDASVDGRVRAMVQAAGQEELCGIDHYGNTLLILAAQYKAGELMHAILAKDCIDVNAVNDAGACALHFACFSASLDVLVARALIANGSKVRVVERTYGCTPLHYAAGSGHVDLCKDLVAAGAIVATCDFHNYTAVDYARQA
Sbjct:    1 LFDFIPYYGAGDASVDGRVRAMVQAAGQEELCGIDHYGNTLLILAAQYKAGELMHAILAKDCIDVNAVNDAGACALHFACFSASLDVLVARALIANGSKVRVVERTYGCTPLHYAAGSGHVDLCKDLVAAGAIVATCDFHNYTAVDYARQA 151          
BLAST of jgi.p|Trimin1|137190 vs. uniprot
Match: D7FMA5_ECTSI (Kinesin motor domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMA5_ECTSI)

HSP 1 Score: 162 bits (410), Expect = 2.130e-43
Identity = 86/153 (56.21%), Postives = 107/153 (69.93%), Query Frame = 1
Query:    1 LFDFIPYYGAGDASVDGRVRAMVQAAGQEELCGIDHYGNTLLILAAQYKAGELMHAILAKD--CIDVNAVNDAGACALHFACFSASLDVLVARALIANGSKVRVVERTYGCTPLHYAAGSGHVDLCKDLVAAGAIVATCDFHNYTAVDYARQA 453
            L +FIPY G GDA+ D  VR+++ AA  EEL G D YGNTLLILA QY+   L+  ILA+    IDV+AVN  GACALHFAC+  S+    A  L+  G++  VVE+TYGCTPLHYAAG+G V+LCK L+  GA   T D + YTAVDYA+Q+
Sbjct:  120 LVEFIPYVGLGDATRDNMVRSILSAADAEELVGRDDYGNTLLILACQYRCKALVPLILARGGGAIDVDAVNSEGACALHFACYKDSVCAQTAVLLLERGAEPEVVEKTYGCTPLHYAAGAGDVNLCKRLIEKGAKANTWDLYQYTAVDYAKQS 272          
BLAST of jgi.p|Trimin1|137190 vs. uniprot
Match: A0A482SRH0_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SRH0_9ARCH)

HSP 1 Score: 139 bits (349), Expect = 2.590e-35
Identity = 70/151 (46.36%), Postives = 97/151 (64.24%), Query Frame = 1
Query:    1 LFDFIPYYGAGDASVDGRVRAMVQAAGQEELCGIDHYGNTLLILAAQYKAGELMHAILAKDCIDVNAVNDAGACALHFACFSASLDVLVARALIANGSKVRVVERTYGCTPLHYAAGSGHVDLCKDLVAAGAIVATCDFHNYTAVDYARQA 453
            L  FIP+YG GD + D  VR+ + +   E++   D YGNTLL+LA QY+  +L   ++ K   + NAVN AGA  LHFAC+  S  + +A+ L+ NG+   V E  YGCTPLHY AGSG ++ CK ++  GA +   D++NYT VDYAR+A
Sbjct:  107 LLQFIPFYGQGDPANDSIVRSALSSLSIEDIDAKDEYGNTLLLLACQYRCEDLARIMINKGA-NPNAVNTAGASCLHFACYQDSSSLPIAKVLLQNGANPDVAESNYGCTPLHYCAGSGDLEFCKLILQYGAQINAYDYYNYTCVDYAREA 256          
BLAST of jgi.p|Trimin1|137190 vs. uniprot
Match: A0A7S3HTU3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HTU3_9STRA)

HSP 1 Score: 124 bits (312), Expect = 3.240e-30
Identity = 61/129 (47.29%), Postives = 86/129 (66.67%), Query Frame = 1
Query:   67 VQAAGQEELCGIDHYGNTLLILAAQYKAGELMHAILAKDCIDVNAVNDAGACALHFACFSASLDVLVARALIANGSKVRVVERTYGCTPLHYAAGSGHVDLCKDLVAAGAIVATCDFHNYTAVDYARQA 453
            + A   E++   D YGNTLL+LA QY+  +L+  +L K   D NAVN +GAC LHFAC+  S  + VA+ L+ +G+   V E T+GCTPLHY AG+G ++ CK L++ GA +   D++NYT VDYA +A
Sbjct:    2 LSALSVEDIDSQDEYGNTLLLLACQYRCEDLVRIMLNKGA-DANAVNSSGACCLHFACYRESASIGVAKILLKSGADPDVAESTFGCTPLHYCAGTGDIEFCKLLLSYGAQIGALDYYNYTCVDYASEA 129          
BLAST of jgi.p|Trimin1|137190 vs. uniprot
Match: A0A7S2K2T0_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K2T0_9STRA)

HSP 1 Score: 116 bits (290), Expect = 3.020e-27
Identity = 67/151 (44.37%), Postives = 89/151 (58.94%), Query Frame = 1
Query:    1 LFDFIPYYGAGDASVDGRVRAMVQAAGQEELCGIDHYGNTLLILAAQYKAGELMHAILAKDCIDVNAVNDAGACALHFACFSASLDVLVARALIANGSKVRVVERTYGCTPLHYAAGSGHVDLCKDLVAAGAIVATCDFHNYTAVDYARQA 453
            L + +P++G GD S D  VR  ++    + L   D  GNT+LILA QY A +L+  ++ K C +VNA N+ GAC LHF C+S ++ V     LI NG+   VVER YG TPLH+AA SG+  LC  L  AGA   T D      + YA+QA
Sbjct:  185 LQEILPFFGQGDLSSDVIVRETIEKLPLDALEMPDRLGNTVLILACQYAAYDLIPLLIEKGC-NVNAQNNDGACCLHFPCYSDTVSVETVELLIDNGAYAEVVERQYGATPLHWAAASGNTFLCSLLANAGASPHTIDLSGCDPIAYAKQA 334          
BLAST of jgi.p|Trimin1|137190 vs. uniprot
Match: A0A7S0XEW9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XEW9_9STRA)

HSP 1 Score: 103 bits (257), Expect = 5.700e-24
Identity = 52/109 (47.71%), Postives = 71/109 (65.14%), Query Frame = 1
Query:  127 ILAAQYKAGELMHAILAKDCIDVNAVNDAGACALHFACFSASLDVLVARALIANGSKVRVVERTYGCTPLHYAAGSGHVDLCKDLVAAGAIVATCDFHNYTAVDYARQA 453
            +LA QYK  +L+  ++ K   D NAVN+ G  +LHFAC+  S  + +A+ L+  G+   V E TYGCTPLHY AG+G +  CK L+  GA   T DF+NYT +DYAR+A
Sbjct:    1 LLACQYKCEDLVRIMINKGA-DPNAVNNLGVSSLHFACYRESSSINIAKLLLQFGANPEVKESTYGCTPLHYCAGTGDLPFCKLLITYGAQTNTYDFYNYTCIDYAREA 108          
BLAST of jgi.p|Trimin1|137190 vs. uniprot
Match: L1JCX3_GUITC (Uncharacterized protein (Fragment) n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JCX3_GUITC)

HSP 1 Score: 48.5 bits (114), Expect = 9.800e-5
Identity = 33/85 (38.82%), Postives = 48/85 (56.47%), Query Frame = 1
Query:  190 DVNAVNDAGACALHFACFSASLDVLVARALIANGSKVRVVERTYGCTPLHYAAGSGHVDLCKDLVAAGAIVATCDFHNYTAVDYA 444
            DVN V+ AG CALH+A    ++DV V   L+ + + V +  +  G T LH AA    ++ CK L+AAGA     D    +A++YA
Sbjct:    7 DVNEVDHAGNCALHYA----AIDVNVLNLLVNHAADVNMTNKV-GATALHEAAEKECIEACKLLLAAGADPDQQDKDGRSALEYA 86          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|137190 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A835YY32_9STRA2.770e-104100.00Ankyrin repeat-containing domain protein (Fragment... [more]
D7FMA5_ECTSI2.130e-4356.21Kinesin motor domain-containing protein n=2 Tax=Ec... [more]
A0A482SRH0_9ARCH2.590e-3546.36Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S3HTU3_9STRA3.240e-3047.29Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S2K2T0_9STRA3.020e-2744.37Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S0XEW9_9STRA5.700e-2447.71Hypothetical protein (Fragment) n=1 Tax=Chromulina... [more]
L1JCX3_GUITC9.800e-538.82Uncharacterized protein (Fragment) n=1 Tax=Guillar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_27contigContig_27:269998..270450 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|137190|gw1.27.41.1
BRITEko00000,ko04812
KEGG koko:K10406
Descriptionproteasome regulatory particle assembly
COG categoryL
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0666@1|root,COG5059@1|root,KOG0239@2759|Eukaryota,KOG4412@2759|Eukaryota
Evalue3.49e-44
Seed ortholog2880.D7FMA5
Hectar predicted targeting categoryother localisation
TranscriptId137512
TrackFilteredModels1
ProteinId137190
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|137190gene_6901Tribonema minus UTEX_B_3156 geneContig_27 269998..270450 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6901_1exon_6901_1Tribonema minus UTEX_B_3156 exonContig_27 269998..270450 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6901CDS_6901Tribonema minus UTEX_B_3156 CDSContig_27 269998..270450 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|137190Trimin1|137190|gw1.27.41.1Tribonema minus UTEX_B_3156 polypeptideContig_27 269998..270450 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6901 ID=mRNA_6901|Name=jgi.p|Trimin1|137190|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=453bp|location=Sequence derived from alignment at Contig_27:269998..270450+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CTTTTTGACTTCATCCCTTACTACGGGGCCGGGGATGCCTCGGTTGATGG
CAGGGTGCGCGCTATGGTGCAAGCAGCTGGTCAGGAAGAGCTGTGCGGCA
TCGATCACTACGGCAACACACTGCTCATTCTGGCCGCGCAGTACAAGGCC
GGCGAGCTGATGCACGCCATCTTGGCAAAGGACTGCATTGACGTCAATGC
AGTGAACGATGCTGGCGCATGCGCTCTACACTTCGCATGCTTTAGCGCTT
CACTGGACGTGCTGGTAGCAAGAGCTTTGATTGCAAATGGCAGCAAGGTG
CGGGTGGTGGAGCGCACTTATGGATGCACGCCTCTCCACTATGCTGCTGG
AAGCGGACATGTGGACCTGTGCAAGGATCTTGTCGCGGCAGGAGCCATCG
TGGCCACATGTGACTTTCACAATTATACAGCAGTCGACTATGCTAGACAG
GCA
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protein sequence of jgi.p|Trimin1|137190

>Trimin1|137190|gw1.27.41.1 ID=Trimin1|137190|gw1.27.41.1|Name=jgi.p|Trimin1|137190|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=151bp
LFDFIPYYGAGDASVDGRVRAMVQAAGQEELCGIDHYGNTLLILAAQYKA
GELMHAILAKDCIDVNAVNDAGACALHFACFSASLDVLVARALIANGSKV
RVVERTYGCTPLHYAAGSGHVDLCKDLVAAGAIVATCDFHNYTAVDYARQ
A
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mRNA from alignment at Contig_27:269998..270450+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6901 ID=mRNA_6901|Name=jgi.p|Trimin1|137190|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=453bp|location=Sequence derived from alignment at Contig_27:269998..270450+ (Tribonema minus UTEX_B_3156 )
CTTTTTGACTTCATCCCTTACTACGGGGCCGGGGATGCCTCGGTTGATGG CAGGGTGCGCGCTATGGTGCAAGCAGCTGGTCAGGAAGAGCTGTGCGGCA TCGATCACTACGGCAACACACTGCTCATTCTGGCCGCGCAGTACAAGGCC GGCGAGCTGATGCACGCCATCTTGGCAAAGGACTGCATTGACGTCAATGC AGTGAACGATGCTGGCGCATGCGCTCTACACTTCGCATGCTTTAGCGCTT CACTGGACGTGCTGGTAGCAAGAGCTTTGATTGCAAATGGCAGCAAGGTG CGGGTGGTGGAGCGCACTTATGGATGCACGCCTCTCCACTATGCTGCTGG AAGCGGACATGTGGACCTGTGCAAGGATCTTGTCGCGGCAGGAGCCATCG TGGCCACATGTGACTTTCACAATTATACAGCAGTCGACTATGCTAGACAG GCA
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Coding sequence (CDS) from alignment at Contig_27:269998..270450+

>mRNA_6901 ID=mRNA_6901|Name=jgi.p|Trimin1|137190|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=453bp|location=Sequence derived from alignment at Contig_27:269998..270450+ (Tribonema minus UTEX_B_3156 )
CTTTTTGACTTCATCCCTTACTACGGGGCCGGGGATGCCTCGGTTGATGG
CAGGGTGCGCGCTATGGTGCAAGCAGCTGGTCAGGAAGAGCTGTGCGGCA
TCGATCACTACGGCAACACACTGCTCATTCTGGCCGCGCAGTACAAGGCC
GGCGAGCTGATGCACGCCATCTTGGCAAAGGACTGCATTGACGTCAATGC
AGTGAACGATGCTGGCGCATGCGCTCTACACTTCGCATGCTTTAGCGCTT
CACTGGACGTGCTGGTAGCAAGAGCTTTGATTGCAAATGGCAGCAAGGTG
CGGGTGGTGGAGCGCACTTATGGATGCACGCCTCTCCACTATGCTGCTGG
AAGCGGACATGTGGACCTGTGCAAGGATCTTGTCGCGGCAGGAGCCATCG
TGGCCACATGTGACTTTCACAATTATACAGCAGTCGACTATGCTAGACAG
GCA
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