mRNA_6888 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|132751
Unique NamemRNA_6888
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|132751 vs. uniprot
Match: A0A836CFI4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFI4_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 7.930e-9
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 1
Query:    1 GLQSAGGLTVTSGGAGVTGDVTILLGGLYATRVITATS 114
            GLQSAGGLTVTSGGAGVTGDVTILLGGLYATRVITATS
Sbjct:    1 GLQSAGGLTVTSGGAGVTGDVTILLGGLYATRVITATS 38          
BLAST of jgi.p|Trimin1|132751 vs. uniprot
Match: A0A835Z624_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z624_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 2.650e-5
Identity = 32/36 (88.89%), Postives = 32/36 (88.89%), Query Frame = 1
Query:    1 GLQSAGGLTVTSGGAGVTGDVTILLGGLYATRVITA 108
            GL SAGGLTVTSGGA VTGDVTIL GGLY TRVITA
Sbjct:    1 GLNSAGGLTVTSGGASVTGDVTILTGGLYTTRVITA 36          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|132751 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A836CFI4_9STRA7.930e-9100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835Z624_9STRA2.650e-588.89Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_27contigContig_27:188168..191410 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|132751|gw1.27.26.1
Hectar predicted targeting categoryother localisation
TranscriptId133073
TrackFilteredModels1
ProteinId132751
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|132751gene_6888Tribonema minus UTEX_B_3156 geneContig_27 188168..191410 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6888_1exon_6888_1Tribonema minus UTEX_B_3156 exonContig_27 188168..190026 +
exon_6888_2exon_6888_2Tribonema minus UTEX_B_3156 exonContig_27 190831..191410 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6888CDS_6888Tribonema minus UTEX_B_3156 CDSContig_27 188168..190026 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|132751Trimin1|132751|gw1.27.26.1Tribonema minus UTEX_B_3156 polypeptideContig_27 188168..191410 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6888 ID=mRNA_6888|Name=jgi.p|Trimin1|132751|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2439bp|location=Sequence derived from alignment at Contig_27:188168..191410+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GGCTTGCAGAGTGCAGGTGGCCTGACCGTCACGTCAGGAGGGGCTGGCGT
GACTGGAGACGTGACCATTCTTTTGGGAGGGCTGTATGCTACCAGAGTTA
TAACGGCGACCAGCGGTGCTGTGGTAACTGGAGACGTGACCATCACTACT
GGCGGCGTGTATGCTGATAGGGTCATAACAGCAACTGGTGGATTGAACAG
CGCAGGTGGCTTAACCGTGACATCAGGGGGTACTAGTGTGACCGGCGATG
TTACAATCCTCACTGGCGGGCTGTATGCTACACGGGTAATAACAGCCATG
GCTGGTGCTGTGGTTACCGGCGACATCACCATTCTGACTGGAGGCCTACA
GTCCACACGCGTCATAACTGCCTCTGCAGGCGCTGTTGTGACAGGGGATG
TCACAATCATCACCGGAGGCTTGCATGCAGCTCAAGTGATCACAGCAACA
GGTGGCCTGACCAGCGCAGGCGGCCTGACAGTGACATCAGGAGGTGCTGC
AGTGACTGGAGACGTAACCATCCTGACAGGCGGACTTTACGCAACGCGGA
TCATAACCGCCACTGGCGGGCTCAACAGCGTAGGCGGCCTGACAGTAACA
TCAGGAGGGGCTGCTGTCACGGGAGACGTTACCATCCTGACTGGAGGGCT
GTACGCTACCCGTGTCATTACAGCGACAGGTGGCGCTGTTGTGACAGGGG
ACGTGACGGTGCTTAGCGGAGGGCTGCACGCCACTCAGATCATCACAGCA
ACTGGTGGTCTGCAAAGCGCAGGCGGCCTGACAGTGACGTCAGGAGGAGC
GAGCGTCACCGGAGATGTCACAATCCTCACTGGTGGGCTGTATGCCACAC
GGGTCATCACTGCCATGGCTGGTGCTGTGGTGACAGGGGATGTCACAATT
GTGACCGGCGGCCTGTATGCTGATAGGGTCATCACAGCAACCGGCGGGTT
AAACAGTGCAGGTGGCTTGACCGTGACATCAGGGGGTGCCAGTGTGACCG
GCGATGTTACAATCCTCACTGGTGGGCTGTATGCTACACGGGTAATAACA
GCCATGGCTGGTGCTGTCGTAACAGGCGACATAACCATCCTGACTGGAGG
CCTACAGTCCACACGCGTCATAACTGCCTCTGCAGGCGCTGTGGTAACAG
GAGATGTCACGATCATCTCTGGAGGCTTGCAGGCAACTCAAGTCATTACG
GCAACGGGTGGCCTGACCAGTGCCGGCGGCCTGACGGTGACTTCAGGCGG
GGCCAGTGTGACCGGCGATGTCACAATTCTCGTTGGTGGGCTGCACGCTA
CACGGGTGATAACCGCCACCGGCGGTGCTGTTGTGACCGGGGATGTTACC
ATTGTAACTGGAGGCCTGCAGTCTACACGGATAATTACAGCCACCGGTGG
CCTGAACAGCTCTGGGGGCCTCACCGTCACGACAGGGGGAGCCAGTGTGA
CGGGAGATGTCACAATCTTGTCAGGAGGACTGTATGCCACACGGGTCATA
ACGGCAACTGGTGGTGCGGTCGTTACTGGCGACGTCACAATCTTGACCGG
AGGCCTACACTCCACACGCGTGATAACCGCTTCAGCAGGTGCTGTTCTAA
CGGGAGATGTAACGATTCTGAGTGGGGGCCTGCACGCTACTCAAGTCATC
ACAGCAATGGGCGGCTTAAACAGTGCCGGCGGCTTGACGGTGACATCAGG
TGGCGCCAGAGTGACTGGAGATGTGACCATCCTAACTGGAGGATTGCATG
CCACGCAGATCATCACCGCCACTGGGGGGCTCAATAGTGCAGGAGGCCTG
ACGGTGGTGACAGGAGGGGCCGCAGTTACAGGAGATGTCACTATCCTCAC
CGGCGGGCTGGTCATCACAGCAACTGGCGGGTTAAACATTGCAGGTGGCT
TAACCGTGACATCAGGGGGTGCCAGTGTGACCGGTGATGTTACAATCCTC
ACTGGTGGGCTGTATGCTACACGGGTAATAACAGCTAGTGGCGGGCTCAA
CAGCGCAGGCGGCCTGACAGTTACGACAGGCGGCGCTGCTGTGACAGGCG
ATGTTACCATTCTTACTGGAGGGTTGCACGTAACACGCGTTATTACCGGC
GCTGGCGGTGCTGTAGTAACTGGAGATGTTACAATTCTCAGCGGAGGGTT
GCATGCCACGCAGGTGATCACAGCAACTGGTGGCCTGAGTAGCACAGGCG
GCCTCACGGTAGTGTCAGGTGGTGCTAGCGTCACCGGGGATGTAACGATT
CTTACAGGGGGTCTGTATGCCACGCGAGTCATCACAGCCAGTGGGGGTCT
CAACAGCGCAGGCGGCCTGAAAGTTACGTCAGGAGGGGCTGCTGTCACGG
GAGATGTTACCATCCTGACTGGAGGGCTGTATGCTACCCGTGTCGTTACA
GCAAGTGGCGGTACTCTGGTGACAGGGGACGTGACGATA
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protein sequence of jgi.p|Trimin1|132751

>Trimin1|132751|gw1.27.26.1 ID=Trimin1|132751|gw1.27.26.1|Name=jgi.p|Trimin1|132751|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=813bp
GLQSAGGLTVTSGGAGVTGDVTILLGGLYATRVITATSGAVVTGDVTITT
GGVYADRVITATGGLNSAGGLTVTSGGTSVTGDVTILTGGLYATRVITAM
AGAVVTGDITILTGGLQSTRVITASAGAVVTGDVTIITGGLHAAQVITAT
GGLTSAGGLTVTSGGAAVTGDVTILTGGLYATRIITATGGLNSVGGLTVT
SGGAAVTGDVTILTGGLYATRVITATGGAVVTGDVTVLSGGLHATQIITA
TGGLQSAGGLTVTSGGASVTGDVTILTGGLYATRVITAMAGAVVTGDVTI
VTGGLYADRVITATGGLNSAGGLTVTSGGASVTGDVTILTGGLYATRVIT
AMAGAVVTGDITILTGGLQSTRVITASAGAVVTGDVTIISGGLQATQVIT
ATGGLTSAGGLTVTSGGASVTGDVTILVGGLHATRVITATGGAVVTGDVT
IVTGGLQSTRIITATGGLNSSGGLTVTTGGASVTGDVTILSGGLYATRVI
TATGGAVVTGDVTILTGGLHSTRVITASAGAVLTGDVTILSGGLHATQVI
TAMGGLNSAGGLTVTSGGARVTGDVTILTGGLHATQIITATGGLNSAGGL
TVVTGGAAVTGDVTILTGGLVITATGGLNIAGGLTVTSGGASVTGDVTIL
TGGLYATRVITASGGLNSAGGLTVTTGGAAVTGDVTILTGGLHVTRVITG
AGGAVVTGDVTILSGGLHATQVITATGGLSSTGGLTVVSGGASVTGDVTI
LTGGLYATRVITASGGLNSAGGLKVTSGGAAVTGDVTILTGGLYATRVVT
ASGGTLVTGDVTI
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mRNA from alignment at Contig_27:188168..191410+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6888 ID=mRNA_6888|Name=jgi.p|Trimin1|132751|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3243bp|location=Sequence derived from alignment at Contig_27:188168..191410+ (Tribonema minus UTEX_B_3156 )
GGCTTGCAGAGTGCAGGTGGCCTGACCGTCACGTCAGGAGGGGCTGGCGT GACTGGAGACGTGACCATTCTTTTGGGAGGGCTGTATGCTACCAGAGTTA TAACGGCGACCAGCGGTGCTGTGGTAACTGGAGACGTGACCATCACTACT GGCGGCGTGTATGCTGATAGGGTCATAACAGCAACTGGTGGATTGAACAG CGCAGGTGGCTTAACCGTGACATCAGGGGGTACTAGTGTGACCGGCGATG TTACAATCCTCACTGGCGGGCTGTATGCTACACGGGTAATAACAGCCATG GCTGGTGCTGTGGTTACCGGCGACATCACCATTCTGACTGGAGGCCTACA GTCCACACGCGTCATAACTGCCTCTGCAGGCGCTGTTGTGACAGGGGATG TCACAATCATCACCGGAGGCTTGCATGCAGCTCAAGTGATCACAGCAACA GGTGGCCTGACCAGCGCAGGCGGCCTGACAGTGACATCAGGAGGTGCTGC AGTGACTGGAGACGTAACCATCCTGACAGGCGGACTTTACGCAACGCGGA TCATAACCGCCACTGGCGGGCTCAACAGCGTAGGCGGCCTGACAGTAACA TCAGGAGGGGCTGCTGTCACGGGAGACGTTACCATCCTGACTGGAGGGCT GTACGCTACCCGTGTCATTACAGCGACAGGTGGCGCTGTTGTGACAGGGG ACGTGACGGTGCTTAGCGGAGGGCTGCACGCCACTCAGATCATCACAGCA ACTGGTGGTCTGCAAAGCGCAGGCGGCCTGACAGTGACGTCAGGAGGAGC GAGCGTCACCGGAGATGTCACAATCCTCACTGGTGGGCTGTATGCCACAC GGGTCATCACTGCCATGGCTGGTGCTGTGGTGACAGGGGATGTCACAATT GTGACCGGCGGCCTGTATGCTGATAGGGTCATCACAGCAACCGGCGGGTT AAACAGTGCAGGTGGCTTGACCGTGACATCAGGGGGTGCCAGTGTGACCG GCGATGTTACAATCCTCACTGGTGGGCTGTATGCTACACGGGTAATAACA GCCATGGCTGGTGCTGTCGTAACAGGCGACATAACCATCCTGACTGGAGG CCTACAGTCCACACGCGTCATAACTGCCTCTGCAGGCGCTGTGGTAACAG GAGATGTCACGATCATCTCTGGAGGCTTGCAGGCAACTCAAGTCATTACG GCAACGGGTGGCCTGACCAGTGCCGGCGGCCTGACGGTGACTTCAGGCGG GGCCAGTGTGACCGGCGATGTCACAATTCTCGTTGGTGGGCTGCACGCTA CACGGGTGATAACCGCCACCGGCGGTGCTGTTGTGACCGGGGATGTTACC ATTGTAACTGGAGGCCTGCAGTCTACACGGATAATTACAGCCACCGGTGG CCTGAACAGCTCTGGGGGCCTCACCGTCACGACAGGGGGAGCCAGTGTGA CGGGAGATGTCACAATCTTGTCAGGAGGACTGTATGCCACACGGGTCATA ACGGCAACTGGTGGTGCGGTCGTTACTGGCGACGTCACAATCTTGACCGG AGGCCTACACTCCACACGCGTGATAACCGCTTCAGCAGGTGCTGTTCTAA CGGGAGATGTAACGATTCTGAGTGGGGGCCTGCACGCTACTCAAGTCATC ACAGCAATGGGCGGCTTAAACAGTGCCGGCGGCTTGACGGTGACATCAGG TGGCGCCAGAGTGACTGGAGATGTGACCATCCTAACTGGAGGATTGCATG CCACGCAGATCATCACCGCCACTGGGGGGCTCAATAGTGCAGGAGGCCTG ACGGTGGTGACAGGAGGGGCCGCAGTTACAGGAGATGTCACTATCCTCAC CGGCGGGCTGTATTCTACACGCGTCATAACGGCCACCGCTGGTGCTGTGG TAACAGGCGATGTCACCATCTTCAGTGGGGGTCTATATGCCACTCAGGTG ATCACAGCCACTGGTGGCATGCAAAGTGCAGGCGGCCTGACAGTAACAGG AGGGGCTGCTGTGACAGGAGATGTGACCATCGCTACCGGAGGTCTCTATT CGAGCCGTGTCATTACCGCTGCTGGCGGCCTAAGCAGTGCAGGCGGTCTG ACGGTGACTTCTGGCGGAGCTAGCGTGACCGGCGACGTTACAGTTTTGAC CGGCGGGCTGTATGCGACGCGGGTCATCACAGCCTTCGGGGGCCTTAGTA GTACCGGTGGCCTAACAGTGGTGGCAGGGGGCGCAGCTGTCACTGGAGAT GTCACAATCCTGACTGGAGGCCTGTACTCCACGCGCGTAATCACAGCCTC AGCGGGTGCTGTAATAACAGGGGATGTGACGATCTTGACTGGAGGGTTGC AGGCAACTCAAGTGATCACAGCAATTGGTGGCCTGACCAGTGCAGGTGGC CTGACGGTGACATCAGGGGGTGCTCGAGTGACTGGAGACGTAAACATCCT TACTGGAGGGCTGCATGCCACTCAGGTAATCACCGCCACGGGGGGGCTTA ACAGTGCAGGTGGCCTCACAGTGATGGCGGGGGGTGCTGCTGTTACTGGA GACGTCACAATCTTGACTGGAGGCCTCTATTCATCACGCGTCATAACAGC CTCTGCAGGAGCTGTGGTGACAGGGGATGTCACTGTTGTGACCGGCGGCC TGTATGCTGATAGGGTCATCACAGCAACTGGCGGGTTAAACATTGCAGGT GGCTTAACCGTGACATCAGGGGGTGCCAGTGTGACCGGTGATGTTACAAT CCTCACTGGTGGGCTGTATGCTACACGGGTAATAACAGCTAGTGGCGGGC TCAACAGCGCAGGCGGCCTGACAGTTACGACAGGCGGCGCTGCTGTGACA GGCGATGTTACCATTCTTACTGGAGGGTTGCACGTAACACGCGTTATTAC CGGCGCTGGCGGTGCTGTAGTAACTGGAGATGTTACAATTCTCAGCGGAG GGTTGCATGCCACGCAGGTGATCACAGCAACTGGTGGCCTGAGTAGCACA GGCGGCCTCACGGTAGTGTCAGGTGGTGCTAGCGTCACCGGGGATGTAAC GATTCTTACAGGGGGTCTGTATGCCACGCGAGTCATCACAGCCAGTGGGG GTCTCAACAGCGCAGGCGGCCTGAAAGTTACGTCAGGAGGGGCTGCTGTC ACGGGAGATGTTACCATCCTGACTGGAGGGCTGTATGCTACCCGTGTCGT TACAGCAAGTGGCGGTACTCTGGTGACAGGGGACGTGACGATA
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Coding sequence (CDS) from alignment at Contig_27:188168..191410+

>mRNA_6888 ID=mRNA_6888|Name=jgi.p|Trimin1|132751|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=2439bp|location=Sequence derived from alignment at Contig_27:188168..191410+ (Tribonema minus UTEX_B_3156 )
GGCTTGCAGAGTGCAGGTGGCCTGACCGTCACGTCAGGAGGGGCTGGCGT
GACTGGAGACGTGACCATTCTTTTGGGAGGGCTGTATGCTACCAGAGTTA
TAACGGCGACCAGCGGTGCTGTGGTAACTGGAGACGTGACCATCACTACT
GGCGGCGTGTATGCTGATAGGGTCATAACAGCAACTGGTGGATTGAACAG
CGCAGGTGGCTTAACCGTGACATCAGGGGGTACTAGTGTGACCGGCGATG
TTACAATCCTCACTGGCGGGCTGTATGCTACACGGGTAATAACAGCCATG
GCTGGTGCTGTGGTTACCGGCGACATCACCATTCTGACTGGAGGCCTACA
GTCCACACGCGTCATAACTGCCTCTGCAGGCGCTGTTGTGACAGGGGATG
TCACAATCATCACCGGAGGCTTGCATGCAGCTCAAGTGATCACAGCAACA
GGTGGCCTGACCAGCGCAGGCGGCCTGACAGTGACATCAGGAGGTGCTGC
AGTGACTGGAGACGTAACCATCCTGACAGGCGGACTTTACGCAACGCGGA
TCATAACCGCCACTGGCGGGCTCAACAGCGTAGGCGGCCTGACAGTAACA
TCAGGAGGGGCTGCTGTCACGGGAGACGTTACCATCCTGACTGGAGGGCT
GTACGCTACCCGTGTCATTACAGCGACAGGTGGCGCTGTTGTGACAGGGG
ACGTGACGGTGCTTAGCGGAGGGCTGCACGCCACTCAGATCATCACAGCA
ACTGGTGGTCTGCAAAGCGCAGGCGGCCTGACAGTGACGTCAGGAGGAGC
GAGCGTCACCGGAGATGTCACAATCCTCACTGGTGGGCTGTATGCCACAC
GGGTCATCACTGCCATGGCTGGTGCTGTGGTGACAGGGGATGTCACAATT
GTGACCGGCGGCCTGTATGCTGATAGGGTCATCACAGCAACCGGCGGGTT
AAACAGTGCAGGTGGCTTGACCGTGACATCAGGGGGTGCCAGTGTGACCG
GCGATGTTACAATCCTCACTGGTGGGCTGTATGCTACACGGGTAATAACA
GCCATGGCTGGTGCTGTCGTAACAGGCGACATAACCATCCTGACTGGAGG
CCTACAGTCCACACGCGTCATAACTGCCTCTGCAGGCGCTGTGGTAACAG
GAGATGTCACGATCATCTCTGGAGGCTTGCAGGCAACTCAAGTCATTACG
GCAACGGGTGGCCTGACCAGTGCCGGCGGCCTGACGGTGACTTCAGGCGG
GGCCAGTGTGACCGGCGATGTCACAATTCTCGTTGGTGGGCTGCACGCTA
CACGGGTGATAACCGCCACCGGCGGTGCTGTTGTGACCGGGGATGTTACC
ATTGTAACTGGAGGCCTGCAGTCTACACGGATAATTACAGCCACCGGTGG
CCTGAACAGCTCTGGGGGCCTCACCGTCACGACAGGGGGAGCCAGTGTGA
CGGGAGATGTCACAATCTTGTCAGGAGGACTGTATGCCACACGGGTCATA
ACGGCAACTGGTGGTGCGGTCGTTACTGGCGACGTCACAATCTTGACCGG
AGGCCTACACTCCACACGCGTGATAACCGCTTCAGCAGGTGCTGTTCTAA
CGGGAGATGTAACGATTCTGAGTGGGGGCCTGCACGCTACTCAAGTCATC
ACAGCAATGGGCGGCTTAAACAGTGCCGGCGGCTTGACGGTGACATCAGG
TGGCGCCAGAGTGACTGGAGATGTGACCATCCTAACTGGAGGATTGCATG
CCACGCAGATCATCACCGCCACTGGGGGGCTCAATAGTGCAGGAGGCCTG
ACGGTGGTGACAGGAGGGGCCGCAGTTACAGGAGATGTCACTATCCTCAC
CGGCGGGCTGGTCATCACAGCAACTGGCGGGTTAAACATTGCAGGTGGCT
TAACCGTGACATCAGGGGGTGCCAGTGTGACCGGTGATGTTACAATCCTC
ACTGGTGGGCTGTATGCTACACGGGTAATAACAGCTAGTGGCGGGCTCAA
CAGCGCAGGCGGCCTGACAGTTACGACAGGCGGCGCTGCTGTGACAGGCG
ATGTTACCATTCTTACTGGAGGGTTGCACGTAACACGCGTTATTACCGGC
GCTGGCGGTGCTGTAGTAACTGGAGATGTTACAATTCTCAGCGGAGGGTT
GCATGCCACGCAGGTGATCACAGCAACTGGTGGCCTGAGTAGCACAGGCG
GCCTCACGGTAGTGTCAGGTGGTGCTAGCGTCACCGGGGATGTAACGATT
CTTACAGGGGGTCTGTATGCCACGCGAGTCATCACAGCCAGTGGGGGTCT
CAACAGCGCAGGCGGCCTGAAAGTTACGTCAGGAGGGGCTGCTGTCACGG
GAGATGTTACCATCCTGACTGGAGGGCTGTATGCTACCCGTGTCGTTACA
GCAAGTGGCGGTACTCTGGTGACAGGGGACGTGACGATA
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