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Homology
BLAST of jgi.p|Trimin1|132751 vs. uniprot
Match: A0A836CFI4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFI4_9STRA) HSP 1 Score: 70.9 bits (172), Expect = 7.930e-9 Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 1
Query: 1 GLQSAGGLTVTSGGAGVTGDVTILLGGLYATRVITATS 114
GLQSAGGLTVTSGGAGVTGDVTILLGGLYATRVITATS
Sbjct: 1 GLQSAGGLTVTSGGAGVTGDVTILLGGLYATRVITATS 38
BLAST of jgi.p|Trimin1|132751 vs. uniprot
Match: A0A835Z624_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z624_9STRA) HSP 1 Score: 59.7 bits (143), Expect = 2.650e-5 Identity = 32/36 (88.89%), Postives = 32/36 (88.89%), Query Frame = 1
Query: 1 GLQSAGGLTVTSGGAGVTGDVTILLGGLYATRVITA 108
GL SAGGLTVTSGGA VTGDVTIL GGLY TRVITA
Sbjct: 1 GLNSAGGLTVTSGGASVTGDVTILTGGLYTTRVITA 36
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
ProteomeId | Trimin1|132751|gw1.27.26.1 |
Hectar predicted targeting category | other localisation |
TranscriptId | 133073 |
Track | FilteredModels1 |
ProteinId | 132751 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_6888 ID=mRNA_6888|Name=jgi.p|Trimin1|132751|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2439bp|location=Sequence derived from alignment at Contig_27:188168..191410+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.
GGCTTGCAGAGTGCAGGTGGCCTGACCGTCACGTCAGGAGGGGCTGGCGT GACTGGAGACGTGACCATTCTTTTGGGAGGGCTGTATGCTACCAGAGTTA TAACGGCGACCAGCGGTGCTGTGGTAACTGGAGACGTGACCATCACTACT GGCGGCGTGTATGCTGATAGGGTCATAACAGCAACTGGTGGATTGAACAG CGCAGGTGGCTTAACCGTGACATCAGGGGGTACTAGTGTGACCGGCGATG TTACAATCCTCACTGGCGGGCTGTATGCTACACGGGTAATAACAGCCATG GCTGGTGCTGTGGTTACCGGCGACATCACCATTCTGACTGGAGGCCTACA GTCCACACGCGTCATAACTGCCTCTGCAGGCGCTGTTGTGACAGGGGATG TCACAATCATCACCGGAGGCTTGCATGCAGCTCAAGTGATCACAGCAACA GGTGGCCTGACCAGCGCAGGCGGCCTGACAGTGACATCAGGAGGTGCTGC AGTGACTGGAGACGTAACCATCCTGACAGGCGGACTTTACGCAACGCGGA TCATAACCGCCACTGGCGGGCTCAACAGCGTAGGCGGCCTGACAGTAACA TCAGGAGGGGCTGCTGTCACGGGAGACGTTACCATCCTGACTGGAGGGCT GTACGCTACCCGTGTCATTACAGCGACAGGTGGCGCTGTTGTGACAGGGG ACGTGACGGTGCTTAGCGGAGGGCTGCACGCCACTCAGATCATCACAGCA ACTGGTGGTCTGCAAAGCGCAGGCGGCCTGACAGTGACGTCAGGAGGAGC GAGCGTCACCGGAGATGTCACAATCCTCACTGGTGGGCTGTATGCCACAC GGGTCATCACTGCCATGGCTGGTGCTGTGGTGACAGGGGATGTCACAATT GTGACCGGCGGCCTGTATGCTGATAGGGTCATCACAGCAACCGGCGGGTT AAACAGTGCAGGTGGCTTGACCGTGACATCAGGGGGTGCCAGTGTGACCG GCGATGTTACAATCCTCACTGGTGGGCTGTATGCTACACGGGTAATAACA GCCATGGCTGGTGCTGTCGTAACAGGCGACATAACCATCCTGACTGGAGG CCTACAGTCCACACGCGTCATAACTGCCTCTGCAGGCGCTGTGGTAACAG GAGATGTCACGATCATCTCTGGAGGCTTGCAGGCAACTCAAGTCATTACG GCAACGGGTGGCCTGACCAGTGCCGGCGGCCTGACGGTGACTTCAGGCGG GGCCAGTGTGACCGGCGATGTCACAATTCTCGTTGGTGGGCTGCACGCTA CACGGGTGATAACCGCCACCGGCGGTGCTGTTGTGACCGGGGATGTTACC ATTGTAACTGGAGGCCTGCAGTCTACACGGATAATTACAGCCACCGGTGG CCTGAACAGCTCTGGGGGCCTCACCGTCACGACAGGGGGAGCCAGTGTGA CGGGAGATGTCACAATCTTGTCAGGAGGACTGTATGCCACACGGGTCATA ACGGCAACTGGTGGTGCGGTCGTTACTGGCGACGTCACAATCTTGACCGG AGGCCTACACTCCACACGCGTGATAACCGCTTCAGCAGGTGCTGTTCTAA CGGGAGATGTAACGATTCTGAGTGGGGGCCTGCACGCTACTCAAGTCATC ACAGCAATGGGCGGCTTAAACAGTGCCGGCGGCTTGACGGTGACATCAGG TGGCGCCAGAGTGACTGGAGATGTGACCATCCTAACTGGAGGATTGCATG CCACGCAGATCATCACCGCCACTGGGGGGCTCAATAGTGCAGGAGGCCTG ACGGTGGTGACAGGAGGGGCCGCAGTTACAGGAGATGTCACTATCCTCAC CGGCGGGCTGGTCATCACAGCAACTGGCGGGTTAAACATTGCAGGTGGCT TAACCGTGACATCAGGGGGTGCCAGTGTGACCGGTGATGTTACAATCCTC ACTGGTGGGCTGTATGCTACACGGGTAATAACAGCTAGTGGCGGGCTCAA CAGCGCAGGCGGCCTGACAGTTACGACAGGCGGCGCTGCTGTGACAGGCG ATGTTACCATTCTTACTGGAGGGTTGCACGTAACACGCGTTATTACCGGC GCTGGCGGTGCTGTAGTAACTGGAGATGTTACAATTCTCAGCGGAGGGTT GCATGCCACGCAGGTGATCACAGCAACTGGTGGCCTGAGTAGCACAGGCG GCCTCACGGTAGTGTCAGGTGGTGCTAGCGTCACCGGGGATGTAACGATT CTTACAGGGGGTCTGTATGCCACGCGAGTCATCACAGCCAGTGGGGGTCT CAACAGCGCAGGCGGCCTGAAAGTTACGTCAGGAGGGGCTGCTGTCACGG GAGATGTTACCATCCTGACTGGAGGGCTGTATGCTACCCGTGTCGTTACA GCAAGTGGCGGTACTCTGGTGACAGGGGACGTGACGATA back to topprotein sequence of jgi.p|Trimin1|132751 >Trimin1|132751|gw1.27.26.1 ID=Trimin1|132751|gw1.27.26.1|Name=jgi.p|Trimin1|132751|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=813bp
GLQSAGGLTVTSGGAGVTGDVTILLGGLYATRVITATSGAVVTGDVTITT GGVYADRVITATGGLNSAGGLTVTSGGTSVTGDVTILTGGLYATRVITAM AGAVVTGDITILTGGLQSTRVITASAGAVVTGDVTIITGGLHAAQVITAT GGLTSAGGLTVTSGGAAVTGDVTILTGGLYATRIITATGGLNSVGGLTVT SGGAAVTGDVTILTGGLYATRVITATGGAVVTGDVTVLSGGLHATQIITA TGGLQSAGGLTVTSGGASVTGDVTILTGGLYATRVITAMAGAVVTGDVTI VTGGLYADRVITATGGLNSAGGLTVTSGGASVTGDVTILTGGLYATRVIT AMAGAVVTGDITILTGGLQSTRVITASAGAVVTGDVTIISGGLQATQVIT ATGGLTSAGGLTVTSGGASVTGDVTILVGGLHATRVITATGGAVVTGDVT IVTGGLQSTRIITATGGLNSSGGLTVTTGGASVTGDVTILSGGLYATRVI TATGGAVVTGDVTILTGGLHSTRVITASAGAVLTGDVTILSGGLHATQVI TAMGGLNSAGGLTVTSGGARVTGDVTILTGGLHATQIITATGGLNSAGGL TVVTGGAAVTGDVTILTGGLVITATGGLNIAGGLTVTSGGASVTGDVTIL TGGLYATRVITASGGLNSAGGLTVTTGGAAVTGDVTILTGGLHVTRVITG AGGAVVTGDVTILSGGLHATQVITATGGLSSTGGLTVVSGGASVTGDVTI LTGGLYATRVITASGGLNSAGGLKVTSGGAAVTGDVTILTGGLYATRVVT ASGGTLVTGDVTI back to topmRNA from alignment at Contig_27:188168..191410+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_6888 ID=mRNA_6888|Name=jgi.p|Trimin1|132751|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3243bp|location=Sequence derived from alignment at Contig_27:188168..191410+ (Tribonema minus UTEX_B_3156 ) GGCTTGCAGAGTGCAGGTGGCCTGACCGTCACGTCAGGAGGGGCTGGCGT
GACTGGAGACGTGACCATTCTTTTGGGAGGGCTGTATGCTACCAGAGTTA
TAACGGCGACCAGCGGTGCTGTGGTAACTGGAGACGTGACCATCACTACT
GGCGGCGTGTATGCTGATAGGGTCATAACAGCAACTGGTGGATTGAACAG
CGCAGGTGGCTTAACCGTGACATCAGGGGGTACTAGTGTGACCGGCGATG
TTACAATCCTCACTGGCGGGCTGTATGCTACACGGGTAATAACAGCCATG
GCTGGTGCTGTGGTTACCGGCGACATCACCATTCTGACTGGAGGCCTACA
GTCCACACGCGTCATAACTGCCTCTGCAGGCGCTGTTGTGACAGGGGATG
TCACAATCATCACCGGAGGCTTGCATGCAGCTCAAGTGATCACAGCAACA
GGTGGCCTGACCAGCGCAGGCGGCCTGACAGTGACATCAGGAGGTGCTGC
AGTGACTGGAGACGTAACCATCCTGACAGGCGGACTTTACGCAACGCGGA
TCATAACCGCCACTGGCGGGCTCAACAGCGTAGGCGGCCTGACAGTAACA
TCAGGAGGGGCTGCTGTCACGGGAGACGTTACCATCCTGACTGGAGGGCT
GTACGCTACCCGTGTCATTACAGCGACAGGTGGCGCTGTTGTGACAGGGG
ACGTGACGGTGCTTAGCGGAGGGCTGCACGCCACTCAGATCATCACAGCA
ACTGGTGGTCTGCAAAGCGCAGGCGGCCTGACAGTGACGTCAGGAGGAGC
GAGCGTCACCGGAGATGTCACAATCCTCACTGGTGGGCTGTATGCCACAC
GGGTCATCACTGCCATGGCTGGTGCTGTGGTGACAGGGGATGTCACAATT
GTGACCGGCGGCCTGTATGCTGATAGGGTCATCACAGCAACCGGCGGGTT
AAACAGTGCAGGTGGCTTGACCGTGACATCAGGGGGTGCCAGTGTGACCG
GCGATGTTACAATCCTCACTGGTGGGCTGTATGCTACACGGGTAATAACA
GCCATGGCTGGTGCTGTCGTAACAGGCGACATAACCATCCTGACTGGAGG
CCTACAGTCCACACGCGTCATAACTGCCTCTGCAGGCGCTGTGGTAACAG
GAGATGTCACGATCATCTCTGGAGGCTTGCAGGCAACTCAAGTCATTACG
GCAACGGGTGGCCTGACCAGTGCCGGCGGCCTGACGGTGACTTCAGGCGG
GGCCAGTGTGACCGGCGATGTCACAATTCTCGTTGGTGGGCTGCACGCTA
CACGGGTGATAACCGCCACCGGCGGTGCTGTTGTGACCGGGGATGTTACC
ATTGTAACTGGAGGCCTGCAGTCTACACGGATAATTACAGCCACCGGTGG
CCTGAACAGCTCTGGGGGCCTCACCGTCACGACAGGGGGAGCCAGTGTGA
CGGGAGATGTCACAATCTTGTCAGGAGGACTGTATGCCACACGGGTCATA
ACGGCAACTGGTGGTGCGGTCGTTACTGGCGACGTCACAATCTTGACCGG
AGGCCTACACTCCACACGCGTGATAACCGCTTCAGCAGGTGCTGTTCTAA
CGGGAGATGTAACGATTCTGAGTGGGGGCCTGCACGCTACTCAAGTCATC
ACAGCAATGGGCGGCTTAAACAGTGCCGGCGGCTTGACGGTGACATCAGG
TGGCGCCAGAGTGACTGGAGATGTGACCATCCTAACTGGAGGATTGCATG
CCACGCAGATCATCACCGCCACTGGGGGGCTCAATAGTGCAGGAGGCCTG
ACGGTGGTGACAGGAGGGGCCGCAGTTACAGGAGATGTCACTATCCTCAC
CGGCGGGCTGTATTCTACACGCGTCATAACGGCCACCGCTGGTGCTGTGG
TAACAGGCGATGTCACCATCTTCAGTGGGGGTCTATATGCCACTCAGGTG
ATCACAGCCACTGGTGGCATGCAAAGTGCAGGCGGCCTGACAGTAACAGG
AGGGGCTGCTGTGACAGGAGATGTGACCATCGCTACCGGAGGTCTCTATT
CGAGCCGTGTCATTACCGCTGCTGGCGGCCTAAGCAGTGCAGGCGGTCTG
ACGGTGACTTCTGGCGGAGCTAGCGTGACCGGCGACGTTACAGTTTTGAC
CGGCGGGCTGTATGCGACGCGGGTCATCACAGCCTTCGGGGGCCTTAGTA
GTACCGGTGGCCTAACAGTGGTGGCAGGGGGCGCAGCTGTCACTGGAGAT
GTCACAATCCTGACTGGAGGCCTGTACTCCACGCGCGTAATCACAGCCTC
AGCGGGTGCTGTAATAACAGGGGATGTGACGATCTTGACTGGAGGGTTGC
AGGCAACTCAAGTGATCACAGCAATTGGTGGCCTGACCAGTGCAGGTGGC
CTGACGGTGACATCAGGGGGTGCTCGAGTGACTGGAGACGTAAACATCCT
TACTGGAGGGCTGCATGCCACTCAGGTAATCACCGCCACGGGGGGGCTTA
ACAGTGCAGGTGGCCTCACAGTGATGGCGGGGGGTGCTGCTGTTACTGGA
GACGTCACAATCTTGACTGGAGGCCTCTATTCATCACGCGTCATAACAGC
CTCTGCAGGAGCTGTGGTGACAGGGGATGTCACTGTTGTGACCGGCGGCC
TGTATGCTGATAGGGTCATCACAGCAACTGGCGGGTTAAACATTGCAGGT
GGCTTAACCGTGACATCAGGGGGTGCCAGTGTGACCGGTGATGTTACAAT
CCTCACTGGTGGGCTGTATGCTACACGGGTAATAACAGCTAGTGGCGGGC
TCAACAGCGCAGGCGGCCTGACAGTTACGACAGGCGGCGCTGCTGTGACA
GGCGATGTTACCATTCTTACTGGAGGGTTGCACGTAACACGCGTTATTAC
CGGCGCTGGCGGTGCTGTAGTAACTGGAGATGTTACAATTCTCAGCGGAG
GGTTGCATGCCACGCAGGTGATCACAGCAACTGGTGGCCTGAGTAGCACA
GGCGGCCTCACGGTAGTGTCAGGTGGTGCTAGCGTCACCGGGGATGTAAC
GATTCTTACAGGGGGTCTGTATGCCACGCGAGTCATCACAGCCAGTGGGG
GTCTCAACAGCGCAGGCGGCCTGAAAGTTACGTCAGGAGGGGCTGCTGTC
ACGGGAGATGTTACCATCCTGACTGGAGGGCTGTATGCTACCCGTGTCGT
TACAGCAAGTGGCGGTACTCTGGTGACAGGGGACGTGACGATA back to topCoding sequence (CDS) from alignment at Contig_27:188168..191410+ >mRNA_6888 ID=mRNA_6888|Name=jgi.p|Trimin1|132751|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=2439bp|location=Sequence derived from alignment at Contig_27:188168..191410+ (Tribonema minus UTEX_B_3156 ) GGCTTGCAGAGTGCAGGTGGCCTGACCGTCACGTCAGGAGGGGCTGGCGT GACTGGAGACGTGACCATTCTTTTGGGAGGGCTGTATGCTACCAGAGTTA TAACGGCGACCAGCGGTGCTGTGGTAACTGGAGACGTGACCATCACTACT GGCGGCGTGTATGCTGATAGGGTCATAACAGCAACTGGTGGATTGAACAG CGCAGGTGGCTTAACCGTGACATCAGGGGGTACTAGTGTGACCGGCGATG TTACAATCCTCACTGGCGGGCTGTATGCTACACGGGTAATAACAGCCATG GCTGGTGCTGTGGTTACCGGCGACATCACCATTCTGACTGGAGGCCTACA GTCCACACGCGTCATAACTGCCTCTGCAGGCGCTGTTGTGACAGGGGATG TCACAATCATCACCGGAGGCTTGCATGCAGCTCAAGTGATCACAGCAACA GGTGGCCTGACCAGCGCAGGCGGCCTGACAGTGACATCAGGAGGTGCTGC AGTGACTGGAGACGTAACCATCCTGACAGGCGGACTTTACGCAACGCGGA TCATAACCGCCACTGGCGGGCTCAACAGCGTAGGCGGCCTGACAGTAACA TCAGGAGGGGCTGCTGTCACGGGAGACGTTACCATCCTGACTGGAGGGCT GTACGCTACCCGTGTCATTACAGCGACAGGTGGCGCTGTTGTGACAGGGG ACGTGACGGTGCTTAGCGGAGGGCTGCACGCCACTCAGATCATCACAGCA ACTGGTGGTCTGCAAAGCGCAGGCGGCCTGACAGTGACGTCAGGAGGAGC GAGCGTCACCGGAGATGTCACAATCCTCACTGGTGGGCTGTATGCCACAC GGGTCATCACTGCCATGGCTGGTGCTGTGGTGACAGGGGATGTCACAATT GTGACCGGCGGCCTGTATGCTGATAGGGTCATCACAGCAACCGGCGGGTT AAACAGTGCAGGTGGCTTGACCGTGACATCAGGGGGTGCCAGTGTGACCG GCGATGTTACAATCCTCACTGGTGGGCTGTATGCTACACGGGTAATAACA GCCATGGCTGGTGCTGTCGTAACAGGCGACATAACCATCCTGACTGGAGG CCTACAGTCCACACGCGTCATAACTGCCTCTGCAGGCGCTGTGGTAACAG GAGATGTCACGATCATCTCTGGAGGCTTGCAGGCAACTCAAGTCATTACG GCAACGGGTGGCCTGACCAGTGCCGGCGGCCTGACGGTGACTTCAGGCGG GGCCAGTGTGACCGGCGATGTCACAATTCTCGTTGGTGGGCTGCACGCTA CACGGGTGATAACCGCCACCGGCGGTGCTGTTGTGACCGGGGATGTTACC ATTGTAACTGGAGGCCTGCAGTCTACACGGATAATTACAGCCACCGGTGG CCTGAACAGCTCTGGGGGCCTCACCGTCACGACAGGGGGAGCCAGTGTGA CGGGAGATGTCACAATCTTGTCAGGAGGACTGTATGCCACACGGGTCATA ACGGCAACTGGTGGTGCGGTCGTTACTGGCGACGTCACAATCTTGACCGG AGGCCTACACTCCACACGCGTGATAACCGCTTCAGCAGGTGCTGTTCTAA CGGGAGATGTAACGATTCTGAGTGGGGGCCTGCACGCTACTCAAGTCATC ACAGCAATGGGCGGCTTAAACAGTGCCGGCGGCTTGACGGTGACATCAGG TGGCGCCAGAGTGACTGGAGATGTGACCATCCTAACTGGAGGATTGCATG CCACGCAGATCATCACCGCCACTGGGGGGCTCAATAGTGCAGGAGGCCTG ACGGTGGTGACAGGAGGGGCCGCAGTTACAGGAGATGTCACTATCCTCAC CGGCGGGCTGGTCATCACAGCAACTGGCGGGTTAAACATTGCAGGTGGCT TAACCGTGACATCAGGGGGTGCCAGTGTGACCGGTGATGTTACAATCCTC ACTGGTGGGCTGTATGCTACACGGGTAATAACAGCTAGTGGCGGGCTCAA CAGCGCAGGCGGCCTGACAGTTACGACAGGCGGCGCTGCTGTGACAGGCG ATGTTACCATTCTTACTGGAGGGTTGCACGTAACACGCGTTATTACCGGC GCTGGCGGTGCTGTAGTAACTGGAGATGTTACAATTCTCAGCGGAGGGTT GCATGCCACGCAGGTGATCACAGCAACTGGTGGCCTGAGTAGCACAGGCG GCCTCACGGTAGTGTCAGGTGGTGCTAGCGTCACCGGGGATGTAACGATT CTTACAGGGGGTCTGTATGCCACGCGAGTCATCACAGCCAGTGGGGGTCT CAACAGCGCAGGCGGCCTGAAAGTTACGTCAGGAGGGGCTGCTGTCACGG GAGATGTTACCATCCTGACTGGAGGGCTGTATGCTACCCGTGTCGTTACA GCAAGTGGCGGTACTCTGGTGACAGGGGACGTGACGATA back to top
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