mRNA_6883 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|348557
Unique Name	mRNA_6883
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|348557 vs. uniprot
Match: A0A835Z5Q2_9STRA (C2H2-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5Q2_9STRA)

HSP 1 Score: 1339 bits (3466), Expect = 0.000e+0
Identity = 762/762 (100.00%), Postives = 762/762 (100.00%), Query Frame = 1

Query:    1 MATAPGSEEDEKDDEGEXXNYAGSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKGKKPKEDFSWVCPTCGKKFTTKPGMRYHVKKANPTSMHKKKPNPSNTTILSQVEPLPSVSWRTGALFPAALLPWQGPSYSVTDLDTWASKQTPPVQLPSRPLHMSVVHHSPAAGSSTKSDATXXXXXXXSTSMTLDAFTGAVHFSGGSPELYFNAGGAVWDMDICAGVDDTSYVAIAIDGPMQADDPRPYNDQGLPGTLVGISSPAPSLLQVWAMQLPQALPLPAAEAATEDGGAVAAPPPVQPAAKATLAYAIAHGGGRGMNVAWAPDPGAYDAAASNGAVAEAAGPCSPQATLGLLAAAFADGLLRIYLCPAVSAVESRSSNNGAGGSSSARRVLEMAPLFTAALPDVLVTCVAWCPYDPTLLLTGLSDGSCSTWHLPPAPPSEPGTTAALEPWLRFVNVAKGPEAGPGSNTMLAVSWSPFERHLFASMGFNEQLCVWDEREPHAPRQMLAPSKARCGTAIAWDPSSGSILFTQMDAPYLHHITMNQGQLHQLWRPMSHPPGAPQHASWSVSTALLPYRRGWWAVAAATPDAEVGLAAYGTAPGHVRPALVCPYNKGYCMRPTVAPVRFTFEAAAAGTAXXXXXXXXXXXXTQASPRITCHVSDAITNPAAPLEPHFAARPPLQALVHCVKLWCARTAQQRPXXXXXXXXXXXXXXXXXXXXXXXXXXXXTWLLCGGAAGLVRCACVNAAIEGALVPGY 2286
            MATAPGSEEDEKDDEGEXXNYAGSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKGKKPKEDFSWVCPTCGKKFTTKPGMRYHVKKANPTSMHKKKPNPSNTTILSQVEPLPSVSWRTGALFPAALLPWQGPSYSVTDLDTWASKQTPPVQLPSRPLHMSVVHHSPAAGSSTKSDATXXXXXXXSTSMTLDAFTGAVHFSGGSPELYFNAGGAVWDMDICAGVDDTSYVAIAIDGPMQADDPRPYNDQGLPGTLVGISSPAPSLLQVWAMQLPQALPLPAAEAATEDGGAVAAPPPVQPAAKATLAYAIAHGGGRGMNVAWAPDPGAYDAAASNGAVAEAAGPCSPQATLGLLAAAFADGLLRIYLCPAVSAVESRSSNNGAGGSSSARRVLEMAPLFTAALPDVLVTCVAWCPYDPTLLLTGLSDGSCSTWHLPPAPPSEPGTTAALEPWLRFVNVAKGPEAGPGSNTMLAVSWSPFERHLFASMGFNEQLCVWDEREPHAPRQMLAPSKARCGTAIAWDPSSGSILFTQMDAPYLHHITMNQGQLHQLWRPMSHPPGAPQHASWSVSTALLPYRRGWWAVAAATPDAEVGLAAYGTAPGHVRPALVCPYNKGYCMRPTVAPVRFTFEAAAAGTAXXXXXXXXXXXXTQASPRITCHVSDAITNPAAPLEPHFAARPPLQALVHCVKLWCARTAQQRPXXXXXXXXXXXXXXXXXXXXXXXXXXXXTWLLCGGAAGLVRCACVNAAIEGALVPGY
Sbjct:    1 MATAPGSEEDEKDDEGEXXNYAGSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKGKKPKEDFSWVCPTCGKKFTTKPGMRYHVKKANPTSMHKKKPNPSNTTILSQVEPLPSVSWRTGALFPAALLPWQGPSYSVTDLDTWASKQTPPVQLPSRPLHMSVVHHSPAAGSSTKSDATXXXXXXXSTSMTLDAFTGAVHFSGGSPELYFNAGGAVWDMDICAGVDDTSYVAIAIDGPMQADDPRPYNDQGLPGTLVGISSPAPSLLQVWAMQLPQALPLPAAEAATEDGGAVAAPPPVQPAAKATLAYAIAHGGGRGMNVAWAPDPGAYDAAASNGAVAEAAGPCSPQATLGLLAAAFADGLLRIYLCPAVSAVESRSSNNGAGGSSSARRVLEMAPLFTAALPDVLVTCVAWCPYDPTLLLTGLSDGSCSTWHLPPAPPSEPGTTAALEPWLRFVNVAKGPEAGPGSNTMLAVSWSPFERHLFASMGFNEQLCVWDEREPHAPRQMLAPSKARCGTAIAWDPSSGSILFTQMDAPYLHHITMNQGQLHQLWRPMSHPPGAPQHASWSVSTALLPYRRGWWAVAAATPDAEVGLAAYGTAPGHVRPALVCPYNKGYCMRPTVAPVRFTFEAAAAGTAXXXXXXXXXXXXTQASPRITCHVSDAITNPAAPLEPHFAARPPLQALVHCVKLWCARTAQQRPXXXXXXXXXXXXXXXXXXXXXXXXXXXXTWLLCGGAAGLVRCACVNAAIEGALVPGY 762

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BLAST of jgi.p|Trimin1|348557 vs. uniprot
Match: W2Q0U6_PHYPN (Uncharacterized protein n=11 Tax=Phytophthora TaxID=4783 RepID=W2Q0U6_PHYPN)

HSP 1 Score: 90.1 bits (222), Expect = 9.850e-15
Identity = 91/328 (27.74%), Postives = 137/328 (41.77%), Query Frame = 1

Query:  700 YVAIAIDGPMQADDPRPYNDQGLPGTLVGISSPAPSLLQVWAMQLPQALPLPAAEAATEDGGAVAAPPPVQPAAKATLAYAIAHGGGRGMNVAWAPDPGAYDAAASNGAVAEAAGPCSPQAT--LGLLAAAFADGLLRIYLCPAVSAVESRSSNNGAGGSSSARRVLEMAPLFTAALPDVLVTCVAWCPYDPTLLLTGLSDGSCSTWHLPPAPPS------EPGTTAALEPWLRF-----VNVAKGPEAGPGSNTMLAVSWSPFERHLFASMGFNEQLCVWDEREPHAPRQMLAPSKARC--GTAIAWDPSSGSILFTQMDAPYLHHI 1638
            ++ +A   P Q +D +   +   P     +   A +L+Q+WA+ + +   L      TE           +  AK  L YAI H  G   ++ W P    +              P SP+    LG+LAA F DG +R++  P +   E    N G       R V +  P+  A LP ++   V W P+   LLLTG SDGS S W++            E      +EP  RF     +   +  + G G   + AV+WSPF+ HLFA+ G +    VWD REP   R  L   + R   G A+ W   +   +     + Y++ I
Sbjct:  195 FLVLATHPPCQVEDGKVVKNTP-PDHYYDVPESARNLIQIWAVPVQRPKTLTGKRGKTE-----------KKPAKPRLVYAIDHESGVAWDLQWCPLVKKF--------------PKSPRRENILGILAACFGDGSVRVFEVPMIPE-ERLQLNIG----KEQRLVDKNIPIVVAKLPRIMQLSVQWSPHTWNLLLTGGSDGSVSLWNIKSTVSESDSLGDERAEPEPIEPQRRFQDADTIGKQEAFDWGCGWVAIRAVAWSPFDEHLFATTGNDSVFKVWDVREP---RVCLRSHRIRSTWGLALQWMDQTSIQISGDQGSVYMYDI 488

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BLAST of jgi.p|Trimin1|348557 vs. uniprot
Match: A0A6A3U806_9STRA (Uncharacterized protein n=6 Tax=Phytophthora TaxID=4783 RepID=A0A6A3U806_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 1.170e-13
Identity = 87/327 (26.61%), Postives = 135/327 (41.28%), Query Frame = 1

Query:  700 YVAIAIDGPMQADDPRPYNDQGLPGTLVGISSPAPSLLQVWAMQLPQALPLPAAEAATEDGGAVAAPPPVQPAAKATLAYAIAHGGGRGMNVAWAPDPGAYDAAASNGAVAEAAGPCSPQATLGLLAAAFADGLLRIYLCPAVSAVESRSSNNGAGGSSSARRVLEM-APLFTAALPDVLVTCVAWCPYDPTLLLTGLSDGSCSTWHLPPA------PPSEPGTTAALEPWLRF-----VNVAKGPEAGPGSNTMLAVSWSPFERHLFASMGFNEQLCVWDEREPHAPRQMLAPSKARC--GTAIAWDPSSGSILFTQMDAPYLHHI 1638
            ++A+A   P Q +D +       P     +   A SL+Q+WA+ + +   +          G            K  + YAI H  G   ++ W P    +  A               +  +G+LAA F DG +R++  P V     +   +  G       V+E   P+  A LP +L   V W P++  +LLTG SDGS S W++  A        +E      +EP  RF     V   +  + G G   + AV+WSPF+ HLFA+ G +    VWD REP   R  L   + R   G A+ W   +   +     + Y++ I
Sbjct:  198 FLALATHPPCQVEDGKVVKATP-PDHYYDVPESARSLIQIWAVPVNRPKVVGTGRLRNGKAGKTTT-------VKPRVVYAIDHESGVAWDLQWCPLVKKFPKAGRR------------EKIMGILAACFGDGSMRVFEIPEVPGGRLQQDISKEG-------VVETNTPVVVARLPRILQLSVQWSPHNWNMLLTGGSDGSVSLWNIKSAISESDSSGTEVNEPEPIEPQRRFQDADTVGKQEAFDWGCGWVAIRAVAWSPFDEHLFATTGNDSVFKVWDVREP---RVCLRSHRIRSTWGLALQWMDQTSIQISGDQGSVYMYDI 494

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BLAST of jgi.p|Trimin1|348557 vs. uniprot
Match: A0A833SI06_PHYIN (Uncharacterized protein n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833SI06_PHYIN)

HSP 1 Score: 85.9 bits (211), Expect = 2.020e-13
Identity = 88/326 (26.99%), Postives = 137/326 (42.02%), Query Frame = 1

Query:  700 YVAIAIDGPMQADDPRPYNDQGLPGTLVGISSPAPSLLQVWAMQLPQALPLPAAEAATEDGGAVAAPPPVQPAAKATLAYAIAHGGGRGMNVAWAPDPGAYDAAASNGAVAEAAGPCSPQATLGLLAAAFADGLLRIYLCPAVSAVESRSSNNGAGGSSSARRVLEMAPLFTAALPDVLVTCVAWCPYDPTLLLTGLSDGSCSTWHLPPAPPSEPGTTAA------LEPWLRF-----VNVAKGPEAGPGSNTMLAVSWSPFERHLFASMGFNEQLCVWDEREPHAPRQMLAPSKARC--GTAIAWDPSSGSILFTQMDAPYLHHI 1638
            ++A+A   P Q  + +   +   P     +   A ++LQ+WA      +P+   + +T+  G  A    V+P     L YAI H  G   ++ W P    +                  +  LG+LAA F DG +R++  PA+   E R   N         + +   P+  A L  ++   V W P+   LLLTG SDGS S W++  A       T        +EP  RF     +   +  + G G   + AV+WSPF+ HLFA+ G +    VWD REP   R  L   + R   G A+ W   +   +     + Y++ I
Sbjct:  194 FLALATHPPCQVAEGKVVKNTP-PDHYYDVPESARNMLQIWA------IPVQRPKLSTDKRGKTATKSLVKP----RLVYAIDHESGVAWDLQWCPLVKKFPTTNRR------------ENILGILAACFGDGSMRVFKIPAIP--EERLQVNIGKEQCLVEKNI---PIVVAKLSRIMQLSVHWSPHTWNLLLTGGSDGSVSLWNIMSAVSGSDSLTGERNEPEPIEPQRRFQDADTIGKQEAFDWGCGWVAIRAVAWSPFDEHLFATTGNDSVFKVWDVREP---RVCLRSHRIRSTWGLALQWMDQTSIQISGDQGSVYMYDI 488

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BLAST of jgi.p|Trimin1|348557 vs. uniprot
Match: A0A0P1A908_PLAHL (3-methyladenine DNA glycosidase n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A908_PLAHL)

HSP 1 Score: 85.5 bits (210), Expect = 2.720e-13
Identity = 72/233 (30.90%), Postives = 104/233 (44.64%), Query Frame = 1

Query:  919 AKATLAYAIAHGGGRGMNVAWAPDPGAYDAAASNGAVAEAAGPCSPQATLGLLAAAFADGLLRIYLCPAVSAVESRSSNNGAGGSSSARRVLEMAPLFTAALPDVLVTCVAWCPYDPTLLLTGLSDGSCSTWHLPPAPPSEPGTT------AALEPWLRF-----VNVAKGPEAGPGSNTMLAVSWSPFERHLFASMGFNEQLCVWDEREPHAPRQMLAPSKARC--GTAIAW 1578
            AK  L YAI H  G   ++ W P             V +       +  LG+LA  F+DG +R+Y  P +S  +    +         R V    P+  A+LP ++   V W P+   +LLTG SDGS S W++  A  +   ++        +EP  RF     +   +  + G G   + AVSWSPF+ HLFA+ G +    VWD REP   R  L   + R   G A+ W
Sbjct:  256 AKPRLVYAIDHDSGVAWDLQWCP------------LVKKFPKSHCLENILGILAVCFSDGSMRVYKIPVISNEQLTREHIV----EKERLVDRCHPIVVASLPRIMQLSVQWSPHSWQMLLTGGSDGSVSLWNIKSAVIASDSSSDDSLKGEPIEPLRRFQDADTIGKQEAFDWGCGWVAIRAVSWSPFDEHLFATTGNDSVFKVWDVREP---RVCLRSHRIRSTWGLALQW 469

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BLAST of jgi.p|Trimin1|348557 vs. uniprot
Match: A0A329RL38_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329RL38_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 3.510e-13
Identity = 88/327 (26.91%), Postives = 138/327 (42.20%), Query Frame = 1

Query:  700 YVAIAIDGPMQADDPRPYNDQGLPGTLVGISSPAPSLLQVWAMQLPQALPLPAAEAATEDGGAVAAPPPVQPAAKATLAYAIAHGGGRGMNVAWAPDPGAYDAAASNGAVAEAAGPCSPQATLGLLAAAFADGLLRIYLCPAVSAVESRSSNNGAGGSSSARRVLEMAPLFTAALPDVLVTCVAWCPYDPTLLLTGLSDGSCSTWHLPPAPPSEPGTTA-------ALEPWLRF-----VNVAKGPEAGPGSNTMLAVSWSPFERHLFASMGFNEQLCVWDEREPHAPRQMLAPSKARC--GTAIAWDPSSGSILFTQMDAPYLHHI 1638
            ++A+A   P Q ++ +   +   P     +   A +L+Q+WA+ + +   L     ATE           +   K  L +AI H  G   ++ W P    +              PC     LG+LAA F DG +R++  PAV     +   +          V +  P+  A LP ++   V W P+   +LLTG SDGS S W++  A  SE  +          +EP  RF     +   +  + G G   + AV+WSPF+ HLFA+ G +    VWD REP   R  L   + R   G A+ W   +   +     + Y++ I
Sbjct:  198 FLALATHPPCQVEEGKVVKNTP-PDHYYDVPESARNLIQIWAVPVQRPKILTDKRGATE-----------KRLVKPRLVFAIDHESGVAWDLQWCPLVKKFPKT-----------PCREN-ILGILAACFGDGSMRVFEIPAVPEERLQMELD-----KEQHLVDKNIPIVVARLPRIMQLSVQWSPHTWNVLLTGGSDGSVSLWNIKSAV-SESDSLGDERIEPEPIEPQRRFQDADTIGKQEAFDWGCGWVAIRAVAWSPFDEHLFATTGNDSVFKVWDVREP---RVCLRSHRIRSTWGLALQWMDQTSIQISGDQGSVYMYDI 491

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BLAST of jgi.p|Trimin1|348557 vs. uniprot
Match: A0A6H5JCY4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCY4_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 1.400e-12
Identity = 79/270 (29.26%), Postives = 106/270 (39.26%), Query Frame = 1

Query:  931 LAYAIAHGGGRGMNVAWAPDPGAYDAAASNGAVAEAAGPCSPQATLGLLAAAFADGLLRIYLCP---AVSAVESRSSNNGAGGSSSARR-----------------VLEMAPLFTAALPDVLVTCVAWCPYDPTLLLTGLSD----------------GSCSTWHLPPAPPSE--PGTTAALEPWLRFVNVAKGPEAGPGSNTMLAVSWSPFERHLFASMGFNEQLCVWDEREPHAPRQMLAPSKARC-GTAIAWDPSSGSILFTQMDAP 1623
            LAY IAH GG  +   W PD GA              G       LGLLAA F DG LR+Y+CP    V+A  + S +N   G+S+                    VL+  P+  A L    V C+ W P +P LLL G SD                G+   W +          GTT    P  +F   A G         +  V+W P   +LFA+ G    L VWD  +   P   +     RC GT++ W P  G ++  ++  P
Sbjct:  707 LAYGIAHDGGGVVKCKWGPDGGA--------------GGEGEGGALGLLAAVFQDGSLRVYVCPDPDGVTAEAASSLSNTTPGASAPXXXXXXXXXXXXXXXHGAVVLKTKPILHARLKHAEVMCLDWSPQEPDLLLAGASDDTTXXXXXXXXXXXAKGTVCIWKVSALGGEHGGEGTTGNHPPMRQFACSAIG-MCDVVQAVVHDVAWCPTSPNLFATTGAGHILTVWDTSDVFEPLCSIPVKTQRCSGTSVRWGP--GGMMRNRLPTP 959

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BLAST of jgi.p|Trimin1|348557 vs. uniprot
Match: G4Z8I1_PHYSP (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4Z8I1_PHYSP)

HSP 1 Score: 82.0 bits (201), Expect = 1.560e-12
Identity = 73/252 (28.97%), Postives = 108/252 (42.86%), Query Frame = 1

Query:  931 LAYAIAHGGGRGMNVAWAPDPGAYDAAASNGAVAEAAGPCSPQATLGLLAAAFADGLLRIYLCPAV--SAVESRSSNNGAGGSSSARRVLEMAPLFTAALPDVLVTCVAWCPYDPTLLLTGLSDGSCSTWHLPPAPPSEPGTTA-------ALEPWLRF-----VNVAKGPEAGPGSNTMLAVSWSPFERHLFASMGFNEQLCVWDEREPHAPRQMLAPSKARC--GTAIAWDPSSGSILFTQMDAPYLHHI 1638
            + YAI H  G   ++ W P    +  A               Q  +G+LAA F DG +R++  P V    ++   S  G         V    P+  A LP +L   V W P++  +LLTG SDGS S W++  A  SE  T          +EP  R+     +   +  + G G   + AV WSPF+ HLFA+ G +    VWD REP   R  +   + R   G A+ W   +   +     + Y++ I
Sbjct:  105 MVYAIDHESGVAWDLQWCPLAKKFPKADRR------------QKIMGILAACFGDGSMRVFEIPEVPEGMLQQEISKEGV--------VENNTPVVVARLPRILQLSVQWSPHNWNMLLTGGSDGSVSLWNVKSAI-SESDTVGNEGSEPDPIEPQRRYQDADTIGKQEAFDWGCGWVAIRAVVWSPFDEHLFATTGNDSVFKVWDIREP---RVCVRSHRIRSTWGLALQWMDQTSIQISGDQGSVYMYDI 332

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BLAST of jgi.p|Trimin1|348557 vs. uniprot
Match: D0NA93_PHYIT (Uncharacterized protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0NA93_PHYIT)

HSP 1 Score: 81.3 bits (199), Expect = 2.890e-12
Identity = 64/204 (31.37%), Postives = 93/204 (45.59%), Query Frame = 1

Query: 1066 LGLLAAAFADGLLRIYLCPAVSAVESRSSNNGAGGSSSARRVLEMAPLFTAALPDVLVTCVAWCPYDPTLLLTGLSDGSCSTWHLPPAPPSEPGTTAA------LEPWLRF-----VNVAKGPEAGPGSNTMLAVSWSPFERHLFASMGFNEQLCVWDEREPHAPRQMLAPSKARC--GTAIAWDPSSGSILFTQMDAPYLHHI 1638
            LG+LAA F DG +R++  PA+   E R   N         + +   P+  A L  ++   V W P+   LLLTG SDGS S W++  A       T        +EP  RF     +   +  + G G   + AV+WSPF+ HLFA+ G +    VWD REP   R  L   + R   G A+ W   +   +     + Y++ I
Sbjct:  141 LGILAACFGDGSMRVFKIPAIP--EERLQVNIGKEQCLVEKNI---PIVVAKLSRIMQLSVHWSPHTWNLLLTGGSDGSVSLWNIMSAVSGSDSLTGERNEPEPIEPQRRFQDADTIGKQEAFDWGCGWVAIRAVAWSPFDEHLFATTGNDSVFKVWDVREP---RVCLRSHRIRSTWGLALQWMDQTSIQISGDQGSVYMYDI 336

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BLAST of jgi.p|Trimin1|348557 vs. uniprot
Match: A0A2P4X2L7_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X2L7_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 4.540e-11
Identity = 85/328 (25.91%), Postives = 134/328 (40.85%), Query Frame = 1

Query:  700 YVAIAIDGPMQADDPRPYNDQGLPGTLVGISSPAPSLLQVWAMQLPQALPLPAAEAATEDGGAVAAPPPVQPAAKATLAYAIAHGGGRGMNVAWAPDPGAYDAAASNGAVAEAAGPCSPQATLGLLAAAFADGLLRIYLCPAVSA--VESRSSNNGAGGSSSARRVLEMAPLFTAALPDVLVTCVAWCPYDPTLLLTGLSDGSCSTWHLPP------APPSEPGTTAALEPWLRF-----VNVAKGPEAGPGSNTMLAVSWSPFERHLFASMGFNEQLCVWDEREPHAPRQMLAPSKARC--GTAIAWDPSSGSILFTQMDAPYLHHI 1638
            Y+A+A   P Q +D +       P     +   A +L+Q+WA+                        PP        + YAI H  G   ++ W P    +    +NG           +  LG+LAA F DG +RI+  P +    ++ + S +          V +  P+  A +P ++   V W P+   +LLTG SDGS S W++        +  +E      +EP  RF     +   +  + G G   + AV+WSPF+ HLFA+ G N    VWD REP   R  L   + R   G A+ W   +   +     + Y++ I
Sbjct:   88 YLALATHPPCQVEDGKVVKSTP-PDHFYDVPESARNLIQIWAV------------------------PP-------RMVYAIDHESGVAWDLQWCPLVNKFPK--TNGR----------KNVLGILAACFGDGSMRIFEIPEIPGERLQPKLSKDDC-------LVEKNTPIVVAIIPRIMQLSVQWSPHHWYMLLTGGSDGSVSLWNIKSTIRESDSLGNERAEPEPIEPQRRFQDADTIGKQEAFDWGCGWVAIRAVAWSPFDEHLFATTG-NVLFKVWDVREP---RVCLRSHRIRSTWGLALQWMDQTSIQISGDQGSVYMYDI 360

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BLAST of jgi.p|Trimin1|348557 vs. uniprot
Match: A0A835ZB47_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB47_9STRA)

HSP 1 Score: 281 bits (720), Expect = 9.370e-95
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 1

Query:   61 MAVHSVLSLLLVATACVSAFVVPSGGLARVSARSQAPSMLLGGVAAAAAASIISTAPASTDYLRTLHNQPVNSWTMLSKTETREGFYGEYSVDVKEQEVDNADSTFKSKEATEKGKNKYNAVLLILLVGSFVIPMVQYWWYIRDEDVDYE 510
            MAVHSVLSLLLVATACVSAFVVPSGGLARVSARSQAPSMLLGGVAAAAAASIISTAPASTDYLRTLHNQPVNSWTMLSKTETREGFYGEYSVDVKEQEVDNADSTFKSKEATEKGKNKYNAVLLILLVGSFVIPMVQYWWYIRDEDVDYE
Sbjct:    1 MAVHSVLSLLLVATACVSAFVVPSGGLARVSARSQAPSMLLGGVAAAAAASIISTAPASTDYLRTLHNQPVNSWTMLSKTETREGFYGEYSVDVKEQEVDNADSTFKSKEATEKGKNKYNAVLLILLVGSFVIPMVQYWWYIRDEDVDYE 150

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BLAST of jgi.p|Trimin1|348557 vs. uniprot
Match: A0A7S2CEE7_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CEE7_9STRA)

HSP 1 Score: 112 bits (281), Expect = 2.770e-28
Identity = 69/141 (48.94%), Postives = 93/141 (65.96%), Query Frame = 1

Query:   76 VLSLLLVATACVSA-FVVPSGGLARVSARSQAPSMLLGGVAAAAAASIISTAPASTDYLRTLHNQPVNSWTMLSKTETREGFYGEYSVDVKEQEVDNADSTFKSKEATEKGKNKYNAVLLILLVGSFVIPMVQYWWYIRDE 495
            +L+LL VA+A   A   +P     R       P  L+   A AAAA+++S+ P  T  L  + N P+      +K ET+EG YGEY V+VKEQ VD+A STFKS +AT+KGKNKY AVL +LLVGSF+IPM+QY+WY+R++
Sbjct:    4 LLTLLTVASAAAFAPKALPRASFNRAVTPRAVPVALVDVAAGAAAAAVLSSQPMDTSMLSNMANVPM--MVSATKYETKEGIYGEYQVEVKEQAVDDARSTFKSAKATKKGKNKYVAVLGVLLVGSFLIPMLQYFWYVRED 142

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BLAST of jgi.p|Trimin1|348557 vs. uniprot
Match: D8LTU5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTU5_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 8.710e-25
Identity = 68/149 (45.64%), Postives = 92/149 (61.74%), Query Frame = 1

Query:   85 LLLVATACVSAFVVPS----GG---LARVSARSQAPSMLL--GGVAAAAAASIISTAPASTDYLRTLHNQPVNSWTMLSKTETREGFYGEYSVDVKEQ--EVDNADSTFKSKEATEKGKNKYNAVLLILLVGSFVIPMVQYWWYIRDED 498
            L+L    C  AFV P     GG     R +A +  P M+L     A AA A +I + P + ++L +  +QP +   +++  ETREG YG Y V+V+E+  E D   STFK KE TE+G++KY +VL +LL GSFVIPMVQYWWYIRD+D
Sbjct:   10 LVLGLVGCSQAFVTPPVTGLGGRVSAGRSAASASGPRMMLPMAPFAGAAVAHLIGSNPINPEHLVSAKSQPTH---LVAYKETREGLYGPYEVEVQERAPETDFGISTFKKKEETEEGRDKYTSVLAVLLAGSFVIPMVQYWWYIRDDD 155

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BLAST of jgi.p|Trimin1|348557 vs. uniprot
Match: A0A7R9U6V2_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U6V2_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 1.950e-20
Identity = 41/69 (59.42%), Postives = 55/69 (79.71%), Query Frame = 1

Query:  292 SKTETREGFYGEYSVDVKEQEVDNADSTFKSKEATEKGKNKYNAVLLILLVGSFVIPMVQYWWYIRDED 498
            ++TE R+G Y EY+++ K Q+ DNA S FKSKE T  GKN+Y AVL +L+VGSF+IPM QYWWYI+D++
Sbjct:   65 AETEVRQGMYKEYTIEKKSQQYDNAASGFKSKEETASGKNRYVAVLGVLVVGSFIIPMAQYWWYIKDDE 133

[Close]

BLAST of jgi.p|Trimin1|348557 vs. uniprot
Match: A0A7S2B691_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B691_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 1.020e-19
Identity = 56/120 (46.67%), Postives = 78/120 (65.00%), Query Frame = 1

Query:  154 ARSQAPSMLLGGVAAAAAASIISTAPASTDYLRTLHNQPVNSWTM------LSKTETREGFYGEYSVDVKEQEVDNADSTFKSKEATEKGKNKYNAVLLILLVGSFVIPMVQYWWYIRDE 495
            ARS   + L    A  AAAS+++ + A+T        +PV++  M      ++  ETREG YG Y V++K Q+VD+A  TFKSK+ T KGK KY AVL +LL GSFVIPM+QY+WY+R++
Sbjct:   34 ARSTPVAKLDSRAAGLAAASLLAASVATTAV------EPVSAHAMYDAPMTVAVKETREGVYGTYEVEIKPQDVDDAAGTFKSKDDTVKGKKKYIAVLGVLLFGSFVIPMLQYFWYVRED 147

[Close]

BLAST of jgi.p|Trimin1|348557 vs. uniprot
Match: A0A1Z5K6I3_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K6I3_FISSO)

HSP 1 Score: 90.9 bits (224), Expect = 1.430e-19
Identity = 40/71 (56.34%), Postives = 55/71 (77.46%), Query Frame = 1

Query:  286 MLSKTETREGFYGEYSVDVKEQEVDNADSTFKSKEATEKGKNKYNAVLLILLVGSFVIPMVQYWWYIRDED 498
            +L++   REG YGEY +D+ EQ+ D+A STFKS + T+  K KY A+L IL+VGSF+IPM QYWWY++D+D
Sbjct:   68 VLAEKVIREGVYGEYEIDLPEQKYDDARSTFKSAKETKTKKGKYTALLAILIVGSFIIPMAQYWWYVKDDD 138

[Close]

BLAST of jgi.p|Trimin1|348557 vs. uniprot
Match: A0A7S3L8Q2_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L8Q2_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 1.100e-18
Identity = 59/144 (40.97%), Postives = 86/144 (59.72%), Query Frame = 1

Query:   76 VLSLLLVATACVS---AFVVPSGGLARVSARSQAPSMLLGGVAAAAAASIISTAPASTDYLRTLHNQPVNSWTMLSKTETREGFYGEYSVDVKEQEVDNADSTFKSKEATEKGKNKYNAVLLILLVGSFVIPMVQYWWYIRDED 498
            +LSLLLVA A V    + V P   L + ++ + A +++        A+S++S AP   D      +  V     +++   REG YGEY VDV +Q  D+A STFKS + T+  K KY A+L +L+VGSF+IPM QY+WY+RD+D
Sbjct:    7 LLSLLLVADAYVQKPKSSVKPLAHLQKTASGAAAAALI--------ASSVLSWAPPPADASFAFTSSQV-----VAEKVIREGVYGEYEVDVPDQVYDDARSTFKSAKETKTKKGKYTALLAVLIVGSFIIPMAQYFWYVRDDD 137

[Close]

BLAST of jgi.p|Trimin1|348557 vs. uniprot
Match: A0A7S3V6F5_9STRA (Hypothetical protein n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V6F5_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 1.340e-18
Identity = 46/102 (45.10%), Postives = 69/102 (67.65%), Query Frame = 1

Query:  190 VAAAAAASIISTAPASTDYLRTLHNQPVNSWTMLSKTETREGFYGEYSVDVKEQEVDNADSTFKSKEATEKGKNKYNAVLLILLVGSFVIPMVQYWWYIRDE 495
            VAA  AA++I+   A  +    + N   +S  +++ TETR G Y +Y +D+  Q VDNA+S+FKS + T+  K KY A+L IL+VGSF+IPM QY+WY++D+
Sbjct:   40 VAATIAANVINPDVAIANDFAMMPNVFQSSNIVVAATETRSGVYKDYDIDLTPQTVDNAESSFKSAKETKSKKGKYTAILAILIVGSFIIPMAQYFWYVKDD 141

[Close]

BLAST of jgi.p|Trimin1|348557 vs. uniprot
Match: W7T3I2_9STRA (Uncharacterized protein n=4 Tax=Monodopsidaceae TaxID=425072 RepID=W7T3I2_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 1.550e-18
Identity = 40/79 (50.63%), Postives = 57/79 (72.15%), Query Frame = 1

Query:  259 HNQPVNSWTMLSKTETREGFYGEYSVDVKEQEVDNADSTFKSKEATEKGKNKYNAVLLILLVGSFVIPMVQYWWYIRDE 495
            HNQ   S T+  + E+R+G Y EY+V+   Q+ +NA+ TFK+K+ T   KNKY A+L +LLVGS VIPM QY+WY++D+
Sbjct:   82 HNQAFTSTTLSKEVESRQGMYKEYTVEKTGQQYENAEGTFKTKDETAGNKNKYVAILAVLLVGSCVIPMAQYFWYVKDD 160

[Close]

BLAST of jgi.p|Trimin1|348557 vs. uniprot
Match: A0A7R9WM32_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WM32_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 4.290e-18
Identity = 40/75 (53.33%), Postives = 58/75 (77.33%), Query Frame = 1

Query:  274 NSWTMLSKTETREGFYGEYSVDVKEQEVDNADSTFKSKEATEKGKNKYNAVLLILLVGSFVIPMVQYWWYIRDED 498
            +S  M+++  TR+G YG+Y VD+  Q VD+A+STFKS + T+  K KY A+L IL+VGSF++PM QY+WY+RD+D
Sbjct:   67 SSTNMVAEKVTRQGMYGDYEVDLT-QTVDDAESTFKSAKETKTKKGKYTAILAILIVGSFIVPMAQYFWYVRDDD 140

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|348557 vs. uniprot
BLAST of jgi.p|Trimin1|348557 vs. uniprot

BLAST of jgi.p|Trimin1|348557 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14


Match Name	E-value	Identity	Description
A0A835Z5Q2_9STRA	0.000e+0	100.00	C2H2-type domain-containing protein n=1 Tax=Tribon...	[more]
W2Q0U6_PHYPN	9.850e-15	27.74	Uncharacterized protein n=11 Tax=Phytophthora TaxI...	[more]
A0A6A3U806_9STRA	1.170e-13	26.61	Uncharacterized protein n=6 Tax=Phytophthora TaxID...	[more]
A0A833SI06_PHYIN	2.020e-13	26.99	Uncharacterized protein n=1 Tax=Phytophthora infes...	[more]
A0A0P1A908_PLAHL	2.720e-13	30.90	3-methyladenine DNA glycosidase n=1 Tax=Plasmopara...	[more]
A0A329RL38_9STRA	3.510e-13	26.91	Uncharacterized protein n=2 Tax=Phytophthora TaxID...	[more]
A0A6H5JCY4_9PHAE	1.400e-12	29.26	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
G4Z8I1_PHYSP	1.560e-12	28.97	Uncharacterized protein (Fragment) n=1 Tax=Phytoph...	[more]
D0NA93_PHYIT	2.890e-12	31.37	Uncharacterized protein n=1 Tax=Phytophthora infes...	[more]
A0A2P4X2L7_9STRA	4.540e-11	25.91	Uncharacterized protein n=1 Tax=Phytophthora palmi...	[more]

Pages

BLAST of jgi.p|Trimin1|348557 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A835ZB47_9STRA	9.370e-95	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A7S2CEE7_9STRA	2.770e-28	48.94	Hypothetical protein n=1 Tax=Florenciella parvula ...	[more]
D8LTU5_ECTSI	8.710e-25	45.64	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
A0A7R9U6V2_9STRA	1.950e-20	59.42	Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi...	[more]
A0A7S2B691_9STRA	1.020e-19	46.67	Hypothetical protein n=1 Tax=Dictyocha speculum Ta...	[more]
A0A1Z5K6I3_FISSO	1.430e-19	56.34	Uncharacterized protein n=2 Tax=Fistulifera solari...	[more]
A0A7S3L8Q2_9STRA	1.100e-18	40.97	Hypothetical protein n=1 Tax=Amphora coffeiformis ...	[more]
A0A7S3V6F5_9STRA	1.340e-18	45.10	Hypothetical protein n=2 Tax=Chaetoceros debilis T...	[more]
W7T3I2_9STRA	1.550e-18	50.63	Uncharacterized protein n=4 Tax=Monodopsidaceae Ta...	[more]
A0A7R9WM32_9STRA	4.290e-18	53.33	Hypothetical protein n=1 Tax=Craspedostauros austr...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_27	contig	Contig_27:142328..145714 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|348557\|estExt_Genemark1.C_Ctg_270018
BRITE	ko00000,ko03021
KEGG ko	ko:K15200,ko:K15205
GOs	GO:0000127,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0006139,GO:0006351,GO:0006383,GO:0006399,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009303,GO:0009304,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0018130,GO:0019438,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0042791,GO:0042797,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0044798,GO:0046483,GO:0070013,GO:0071704,GO:0090304,GO:0090576,GO:0097659,GO:0098781,GO:1901360,GO:1901362,GO:1901576
Preferred name	GTF3C2
Description	transcription by RNA polymerase III
COG category	S
Max annot lvl	2759\|Eukaryota
EggNOG OGs	293D8@1\|root,2RAA6@2759\|Eukaryota
Evalue	3.89e-17
Seed ortholog	653948.CCA17576
Hectar predicted targeting category	other localisation
TranscriptId	348879
Track	FilteredModels1
ProteinId	348557

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|348557	gene_6883	Tribonema minus UTEX_B_3156	gene	Contig_27 142328..145714 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|348557	Trimin1\|348557\|estExt_Genemark1.C_Ctg_270018	Tribonema minus UTEX_B_3156	polypeptide	Contig_27 142328..145714 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_6883_2	exon_6883_2	Tribonema minus UTEX_B_3156	exon	Contig_27 142328..144337 -
exon_6883_1	exon_6883_1	Tribonema minus UTEX_B_3156	exon	Contig_27 145436..145714 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_6883	CDS_6883	Tribonema minus UTEX_B_3156	CDS	Contig_27 145436..145714 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_27:142328..145714-
coding sequence from alignment at Contig_27:142328..145714-

spliced messenger RNA

>mRNA_6883 ID=mRNA_6883|Name=jgi.p|Trimin1|348557|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2289bp|location=Sequence derived from alignment at Contig_27:142328..145714- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAACCGCGCCAGGCTCTGAAGAGGATGAAAAAGATGATGAAGGCGA
AGACGAAAACTACGCTGGGAGCGATGCGAGCGGCAGCGATGCTGACGAAA
GCGATGCCAGCGATGCCTCTGCCAAGGGACGGGGCAAGGGGCAAGCGAAG
GCAAAGGGCAAGGCAAAGGGGGTTAGGGGCAAAGGGAAAAAGCCGAAGGA
GGATTTTTCCTGGGTGTGCCCCACTTGCGGCAAAAAGTTCACGACAAAGC
CGGGCATGCGATATCACGTGAAGAAAGCGAACCCAACCTCGATGCACAAG
AAGAAGCCCAATCCCTCCAACACCACCATCCTGTCCCAAGTGGAGCCGCT
GCCTTCAGTGTCATGGCGTACCGGGGCACTGTTCCCTGCGGCGCTGCTGC
CTTGGCAAGGGCCCTCCTACTCCGTGACTGATTTGGACACGTGGGCGAGC
AAACAGACACCACCAGTGCAGCTGCCGTCGCGGCCGTTGCACATGAGTGT
TGTCCATCACTCCCCTGCAGCTGGTTCCAGTACCAAATCAGACGCGACAG
CTGCTGCCGCCGCTGCCACCTCCACTTCAATGACGCTGGACGCCTTTACC
GGTGCCGTTCATTTCAGCGGTGGCAGCCCAGAGCTGTACTTCAACGCGGG
CGGAGCAGTGTGGGACATGGACATATGCGCAGGAGTCGATGACACCTCGT
ACGTGGCCATTGCCATCGACGGACCCATGCAGGCAGATGACCCACGCCCA
TACAATGACCAAGGCCTTCCGGGCACGCTCGTGGGCATCAGCAGCCCGGC
GCCGTCACTGCTGCAGGTGTGGGCTATGCAGCTCCCGCAAGCACTGCCCC
TGCCGGCAGCCGAGGCGGCCACAGAGGACGGTGGAGCAGTAGCAGCGCCG
CCGCCGGTGCAGCCTGCAGCCAAGGCTACGCTTGCGTATGCAATAGCGCA
TGGGGGTGGCAGGGGTATGAATGTGGCGTGGGCACCCGACCCGGGGGCGT
ACGATGCCGCTGCCAGCAATGGCGCTGTAGCAGAAGCAGCAGGTCCATGC
AGCCCGCAGGCGACGCTTGGACTGCTGGCAGCGGCATTCGCGGACGGGCT
GCTGCGCATCTACCTGTGCCCCGCAGTGAGCGCCGTCGAAAGCAGGAGCA
GCAACAACGGCGCCGGCGGCAGCAGCAGCGCACGGCGTGTGCTAGAGATG
GCGCCGCTGTTCACCGCTGCGCTGCCCGACGTGCTGGTGACGTGCGTCGC
CTGGTGCCCGTACGACCCAACGCTGCTGCTTACAGGCTTGTCCGACGGCT
CGTGCAGCACATGGCACCTCCCGCCTGCGCCGCCTTCAGAGCCCGGCACC
ACCGCCGCGCTGGAGCCATGGCTGCGCTTCGTCAATGTGGCCAAGGGGCC
GGAGGCAGGGCCCGGCAGCAACACTATGCTGGCCGTGAGCTGGTCGCCCT
TTGAGCGCCACCTATTTGCGTCCATGGGCTTCAACGAGCAGCTGTGCGTG
TGGGACGAGCGCGAGCCGCATGCGCCGCGCCAGATGCTGGCGCCCTCCAA
GGCGCGCTGCGGCACGGCCATCGCCTGGGACCCCAGCAGCGGCAGCATCC
TCTTCACCCAGATGGACGCCCCCTACCTGCACCACATCACCATGAACCAG
GGGCAGCTGCACCAGCTGTGGCGCCCCATGTCGCACCCGCCCGGTGCGCC
GCAGCACGCCTCGTGGTCGGTGAGCACCGCGCTGCTGCCGTACAGGCGAG
GCTGGTGGGCGGTGGCGGCTGCCACCCCGGACGCGGAAGTGGGGCTTGCA
GCGTACGGCACTGCACCCGGGCACGTGCGGCCTGCACTAGTGTGCCCCTA
CAACAAGGGGTATTGCATGCGTCCCACCGTTGCGCCGGTGCGATTCACGT
TCGAGGCGGCGGCGGCGGGCACGGCAGAAGCAGCGGCGGCGGCGATGGGG
GAGGCGGCAGCAACGCAGGCATCGCCACGGATCACGTGCCATGTCAGCGA
CGCAATCACAAACCCCGCAGCGCCGCTGGAGCCGCACTTTGCCGCACGGC
CGCCCCTGCAGGCGCTGGTGCACTGTGTCAAGCTCTGGTGCGCGCGCACA
GCACAGCAGCGGCCACCAAGCAGTGCAGGCGGCGAGGATGCCAGCGAAGG
GGATGACGAGAGTATTGCGCAGTGGCCGCCGCCGCCTCCGCTGCCGCCGA
CATGGCTGCTATGCGGCGGCGCAGCTGGGCTGGTGAGGTGCGCTTGCGTA
AATGCGGCTATCGAGGGAGCGCTCGTGCCAGGGTATTGA

protein sequence of jgi.p|Trimin1|348557

>Trimin1|348557|estExt_Genemark1.C_Ctg_270018 ID=Trimin1|348557|estExt_Genemark1.C_Ctg_270018|Name=jgi.p|Trimin1|348557|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=763bp
MATAPGSEEDEKDDEGEDENYAGSDASGSDADESDASDASAKGRGKGQAK
AKGKAKGVRGKGKKPKEDFSWVCPTCGKKFTTKPGMRYHVKKANPTSMHK
KKPNPSNTTILSQVEPLPSVSWRTGALFPAALLPWQGPSYSVTDLDTWAS
KQTPPVQLPSRPLHMSVVHHSPAAGSSTKSDATAAAAAATSTSMTLDAFT
GAVHFSGGSPELYFNAGGAVWDMDICAGVDDTSYVAIAIDGPMQADDPRP
YNDQGLPGTLVGISSPAPSLLQVWAMQLPQALPLPAAEAATEDGGAVAAP
PPVQPAAKATLAYAIAHGGGRGMNVAWAPDPGAYDAAASNGAVAEAAGPC
SPQATLGLLAAAFADGLLRIYLCPAVSAVESRSSNNGAGGSSSARRVLEM
APLFTAALPDVLVTCVAWCPYDPTLLLTGLSDGSCSTWHLPPAPPSEPGT
TAALEPWLRFVNVAKGPEAGPGSNTMLAVSWSPFERHLFASMGFNEQLCV
WDEREPHAPRQMLAPSKARCGTAIAWDPSSGSILFTQMDAPYLHHITMNQ
GQLHQLWRPMSHPPGAPQHASWSVSTALLPYRRGWWAVAAATPDAEVGLA
AYGTAPGHVRPALVCPYNKGYCMRPTVAPVRFTFEAAAAGTAEAAAAAMG
EAAATQASPRITCHVSDAITNPAAPLEPHFAARPPLQALVHCVKLWCART
AQQRPPSSAGGEDASEGDDESIAQWPPPPPLPPTWLLCGGAAGLVRCACV
NAAIEGALVPGY*

mRNA from alignment at Contig_27:142328..145714-

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6883 ID=mRNA_6883|Name=jgi.p|Trimin1|348557|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3387bp|location=Sequence derived from alignment at Contig_27:142328..145714- (Tribonema minus UTEX_B_3156 )
ATGGCAACCGCGCCAGGCTCTGAAGAGGATGAAAAAGATGATGAAGGCGA
AGACGAAAACTACGCTGGGAGCGATGCGAGCGGCAGCGATGCTGACGAAA
GCGATGCCAGCGATGCCTCTGCCAAGGGACGGGGCAAGGGGCAAGCGAAG
GCAAAGGGCAAGGCAAAGGGGGTTAGGGGCAAAGGGAAAAAGCCGAAGGA
GGATTTTTCCTGGGTGTGCCCCACTTGCGGCAAAAAGTTCACGACAAAGC
CGGGCATGCGATATCACGTGAAGAAAGCGGTATGTTCCAACAAAGGAGCA
AAAGGGACAAAAGCTGGAGCAAAGAGATTGCTTGCAAAAAAGGTGAGGCT
GCCATTATCACACATTGCATACCATTGTTCAATTTATAATATGTCATGGT
GCTGCAGGCATACGAAATGCAATACCGAATGTGGGTATGTAGCAGTAACC
TATGTGACCGGGTGGTGTTCATTCAGTTTCACGTAGCTTGACTGCAGCAC
TCTCACCGAGTCGCCATGCGTCATGAGTCACAAGTAGCTCTGGGGACTGC
TGCTGGCTGACGAAATAGGTTTGAAGCCCTGAGGATCAATACATCGACAT
TTGGATGAGACCAGGAGGTTTGGATTGATCTGCTTGGTGTGTGTTGTCCA
TGTGTTAACGAAAGGTTGCAGTGGATCATATCCAGCAGGCATGAAGTGCA
TTGTGTCATGCGCCAATTGGGAGTTCACAGCAAAAAGGAGGAGCTGATGC
TACCGACCTGAGGGGTTGCAGTTGCTCATTCTGCTGCAGCTGATTTGCGC
CCAATTTTGCTGCTGCAGTACCCGGGTACATCCAATGGGGCGGGCCAACT
GCTGAGTGATTGACGTTGCGCAATGGGCTGTGCATTGCATTATTGCTGCA
GCACACACAGTGCATTGCACACCTTCTTATTGAATTCAATCATTTAGTTC
GCGCATTTGTCTGATCTGATCTGACTGCTCAAGTGTATGCGTCGGCGTTG
GACGTGTACTGGTTGCTTGAAGTATGTGGCCAGCGACATCGTGTCCTCTG
AATGCATGACTTCACCAGTATTGCAGTTTTCATGGTGTGCTACCTGCAGC
TGGTTCCCATTTCAAAGTACTGTTTCAGCCCTCGGCTTGGGTCAACTGCC
CCTCACATGATCAATCTGAAGGTTCCCTTCGGCTTGCCTATCAATGAAAG
TGTATGTGCATACAGCAGGTCATTGTTGAACATGCATCGAGGGCTCAACT
GCAATGGCTGCCTGGTCTTACACAACATGAGCAACAAGACCTCAACTGCA
GCCGATTGCCAGTCCCTTGCAAAACATGAATCGCATCACCTAAAGCTATT
GCCACTCTGTTGCTTGCTGCGCTGCAGAACCCAACCTCGATGCACAAGAA
GAAGCCCAATCCCTCCAACACCACCATCCTGTCCCAAGTGGAGCCGCTGC
CTTCAGTGTCATGGCGTACCGGGGCACTGTTCCCTGCGGCGCTGCTGCCT
TGGCAAGGGCCCTCCTACTCCGTGACTGATTTGGACACGTGGGCGAGCAA
ACAGACACCACCAGTGCAGCTGCCGTCGCGGCCGTTGCACATGAGTGTTG
TCCATCACTCCCCTGCAGCTGGTTCCAGTACCAAATCAGACGCGACAGCT
GCTGCCGCCGCTGCCACCTCCACTTCAATGACGCTGGACGCCTTTACCGG
TGCCGTTCATTTCAGCGGTGGCAGCCCAGAGCTGTACTTCAACGCGGGCG
GAGCAGTGTGGGACATGGACATATGCGCAGGAGTCGATGACACCTCGTAC
GTGGCCATTGCCATCGACGGACCCATGCAGGCAGATGACCCACGCCCATA
CAATGACCAAGGCCTTCCGGGCACGCTCGTGGGCATCAGCAGCCCGGCGC
CGTCACTGCTGCAGGTGTGGGCTATGCAGCTCCCGCAAGCACTGCCCCTG
CCGGCAGCCGAGGCGGCCACAGAGGACGGTGGAGCAGTAGCAGCGCCGCC
GCCGGTGCAGCCTGCAGCCAAGGCTACGCTTGCGTATGCAATAGCGCATG
GGGGTGGCAGGGGTATGAATGTGGCGTGGGCACCCGACCCGGGGGCGTAC
GATGCCGCTGCCAGCAATGGCGCTGTAGCAGAAGCAGCAGGTCCATGCAG
CCCGCAGGCGACGCTTGGACTGCTGGCAGCGGCATTCGCGGACGGGCTGC
TGCGCATCTACCTGTGCCCCGCAGTGAGCGCCGTCGAAAGCAGGAGCAGC
AACAACGGCGCCGGCGGCAGCAGCAGCGCACGGCGTGTGCTAGAGATGGC
GCCGCTGTTCACCGCTGCGCTGCCCGACGTGCTGGTGACGTGCGTCGCCT
GGTGCCCGTACGACCCAACGCTGCTGCTTACAGGCTTGTCCGACGGCTCG
TGCAGCACATGGCACCTCCCGCCTGCGCCGCCTTCAGAGCCCGGCACCAC
CGCCGCGCTGGAGCCATGGCTGCGCTTCGTCAATGTGGCCAAGGGGCCGG
AGGCAGGGCCCGGCAGCAACACTATGCTGGCCGTGAGCTGGTCGCCCTTT
GAGCGCCACCTATTTGCGTCCATGGGCTTCAACGAGCAGCTGTGCGTGTG
GGACGAGCGCGAGCCGCATGCGCCGCGCCAGATGCTGGCGCCCTCCAAGG
CGCGCTGCGGCACGGCCATCGCCTGGGACCCCAGCAGCGGCAGCATCCTC
TTCACCCAGATGGACGCCCCCTACCTGCACCACATCACCATGAACCAGGG
GCAGCTGCACCAGCTGTGGCGCCCCATGTCGCACCCGCCCGGTGCGCCGC
AGCACGCCTCGTGGTCGGTGAGCACCGCGCTGCTGCCGTACAGGCGAGGC
TGGTGGGCGGTGGCGGCTGCCACCCCGGACGCGGAAGTGGGGCTTGCAGC
GTACGGCACTGCACCCGGGCACGTGCGGCCTGCACTAGTGTGCCCCTACA
ACAAGGGGTATTGCATGCGTCCCACCGTTGCGCCGGTGCGATTCACGTTC
GAGGCGGCGGCGGCGGGCACGGCAGAAGCAGCGGCGGCGGCGATGGGGGA
GGCGGCAGCAACGCAGGCATCGCCACGGATCACGTGCCATGTCAGCGACG
CAATCACAAACCCCGCAGCGCCGCTGGAGCCGCACTTTGCCGCACGGCCG
CCCCTGCAGGCGCTGGTGCACTGTGTCAAGCTCTGGTGCGCGCGCACAGC
ACAGCAGCGGCCACCAAGCAGTGCAGGCGGCGAGGATGCCAGCGAAGGGG
ATGACGAGAGTATTGCGCAGTGGCCGCCGCCGCCTCCGCTGCCGCCGACA
TGGCTGCTATGCGGCGGCGCAGCTGGGCTGGTGAGGTGCGCTTGCGTAAA
TGCGGCTATCGAGGGAGCGCTCGTGCCAGGGTATTGA

Coding sequence (CDS) from alignment at Contig_27:142328..145714-

>mRNA_6883 ID=mRNA_6883|Name=jgi.p|Trimin1|348557|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=2289bp|location=Sequence derived from alignment at Contig_27:142328..145714- (Tribonema minus UTEX_B_3156 )
ATGGCAACCGCGCCAGGCTCTGAAGAGGATGAAAAAGATGATGAAGGCGA
AGACGAAAACTACGCTGGGAGCGATGCGAGCGGCAGCGATGCTGACGAAA
GCGATGCCAGCGATGCCTCTGCCAAGGGACGGGGCAAGGGGCAAGCGAAG
GCAAAGGGCAAGGCAAAGGGGGTTAGGGGCAAAGGGAAAAAGCCGAAGGA
GGATTTTTCCTGGGTGTGCCCCACTTGCGGCAAAAAGTTCACGACAAAGC
CGGGCATGCGATATCACGTGAAGAAAGCGAACCCAACCTCGATGCACAAG
AAGAAGCCCAATCCCTCCAACACCACCATCCTGTCCCAAGTGGAGCCGCT
GCCTTCAGTGTCATGGCGTACCGGGGCACTGTTCCCTGCGGCGCTGCTGC
CTTGGCAAGGGCCCTCCTACTCCGTGACTGATTTGGACACGTGGGCGAGC
AAACAGACACCACCAGTGCAGCTGCCGTCGCGGCCGTTGCACATGAGTGT
TGTCCATCACTCCCCTGCAGCTGGTTCCAGTACCAAATCAGACGCGACAG
CTGCTGCCGCCGCTGCCACCTCCACTTCAATGACGCTGGACGCCTTTACC
GGTGCCGTTCATTTCAGCGGTGGCAGCCCAGAGCTGTACTTCAACGCGGG
CGGAGCAGTGTGGGACATGGACATATGCGCAGGAGTCGATGACACCTCGT
ACGTGGCCATTGCCATCGACGGACCCATGCAGGCAGATGACCCACGCCCA
TACAATGACCAAGGCCTTCCGGGCACGCTCGTGGGCATCAGCAGCCCGGC
GCCGTCACTGCTGCAGGTGTGGGCTATGCAGCTCCCGCAAGCACTGCCCC
TGCCGGCAGCCGAGGCGGCCACAGAGGACGGTGGAGCAGTAGCAGCGCCG
CCGCCGGTGCAGCCTGCAGCCAAGGCTACGCTTGCGTATGCAATAGCGCA
TGGGGGTGGCAGGGGTATGAATGTGGCGTGGGCACCCGACCCGGGGGCGT
ACGATGCCGCTGCCAGCAATGGCGCTGTAGCAGAAGCAGCAGGTCCATGC
AGCCCGCAGGCGACGCTTGGACTGCTGGCAGCGGCATTCGCGGACGGGCT
GCTGCGCATCTACCTGTGCCCCGCAGTGAGCGCCGTCGAAAGCAGGAGCA
GCAACAACGGCGCCGGCGGCAGCAGCAGCGCACGGCGTGTGCTAGAGATG
GCGCCGCTGTTCACCGCTGCGCTGCCCGACGTGCTGGTGACGTGCGTCGC
CTGGTGCCCGTACGACCCAACGCTGCTGCTTACAGGCTTGTCCGACGGCT
CGTGCAGCACATGGCACCTCCCGCCTGCGCCGCCTTCAGAGCCCGGCACC
ACCGCCGCGCTGGAGCCATGGCTGCGCTTCGTCAATGTGGCCAAGGGGCC
GGAGGCAGGGCCCGGCAGCAACACTATGCTGGCCGTGAGCTGGTCGCCCT
TTGAGCGCCACCTATTTGCGTCCATGGGCTTCAACGAGCAGCTGTGCGTG
TGGGACGAGCGCGAGCCGCATGCGCCGCGCCAGATGCTGGCGCCCTCCAA
GGCGCGCTGCGGCACGGCCATCGCCTGGGACCCCAGCAGCGGCAGCATCC
TCTTCACCCAGATGGACGCCCCCTACCTGCACCACATCACCATGAACCAG
GGGCAGCTGCACCAGCTGTGGCGCCCCATGTCGCACCCGCCCGGTGCGCC
GCAGCACGCCTCGTGGTCGGTGAGCACCGCGCTGCTGCCGTACAGGCGAG
GCTGGTGGGCGGTGGCGGCTGCCACCCCGGACGCGGAAGTGGGGCTTGCA
GCGTACGGCACTGCACCCGGGCACGTGCGGCCTGCACTAGTGTGCCCCTA
CAACAAGGGGTATTGCATGCGTCCCACCGTTGCGCCGGTGCGATTCACGT
TCGAGGCGGCGGCGGCGGGCACGGCAGAAGCAGCGGCGGCGGCGATGGGG
GAGGCGGCAGCAACGCAGGCATCGCCACGGATCACGTGCCATGTCAGCGA
CGCAATCACAAACCCCGCAGCGCCGCTGGAGCCGCACTTTGCCGCACGGC
CGCCCCTGCAGGCGCTGGTGCACTGTGTCAAGCTCTGGTGCGCGCGCACA
GCACAGCAGCGGCCACCAAGCAGTGCAGGCGGCGAGGATGCCAGCGAAGG
GGATGACGAGAGTATTGCGCAGTGGCCGCCGCCGCCTCCGCTGCCGCCGA
CATGGCTGCTATGCGGCGGCGCAGCTGGGCTGGTGAGGTGCGCTTGCGTA
AATGCGGCTATCGAGGGAGCGCTCGTGCCAGGGTATTGA