mRNA_6878 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|163730
Unique NamemRNA_6878
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|163730 vs. uniprot
Match: A0A835YYE3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYE3_9STRA)

HSP 1 Score: 110 bits (276), Expect = 4.910e-31
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 1 
Query:    1 MPISVAERGTKKWAEIATHIPGRSNKQRRERWLNQLDPTISKITSTTKLGANLN 162
            MPISVAERGTKKWAEIATHIPGRSNKQRRERWLNQLDPTISKITSTTKLGANLN
Sbjct:    1 MPISVAERGTKKWAEIATHIPGRSNKQRRERWLNQLDPTISKITSTTKLGANLN 54
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BLAST of jgi.p|Trimin1|163730 vs. uniprot
Match: A0A836CH87_9STRA (Homeodomain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH87_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 4.320e-13
Identity = 33/43 (76.74%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:   13 VAERGTKKWAEIATHIPGRSNKQRRERWLNQLDPTISKITSTT 141
            VA+ G KKWAEIA HIPGRSN Q RERWLNQLDP ISK   TT
Sbjct:   10 VAQHGLKKWAEIAKHIPGRSNTQCRERWLNQLDPKISKRKWTT 52
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BLAST of jgi.p|Trimin1|163730 vs. uniprot
Match: A0A7S0BN60_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BN60_9RHOD)

HSP 1 Score: 55.1 bits (131), Expect = 5.850e-8
Identity = 24/40 (60.00%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:   13 VAERGTKKWAEIATHIPGRSNKQRRERWLNQLDPTISKIT 132
            V + G ++W EIATHI GR+ KQ RERWLNQL+P ++K T
Sbjct:   38 VQKYGARRWTEIATHIHGRTGKQARERWLNQLNPQLTKTT 77
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BLAST of jgi.p|Trimin1|163730 vs. uniprot
Match: F0Y1Q2_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y1Q2_AURAN)

HSP 1 Score: 52.8 bits (125), Expect = 6.130e-8
Identity = 22/39 (56.41%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:   10 SVAERGTKKWAEIATHIPGRSNKQRRERWLNQLDPTISK 126
            ++   GT+KW+ +A+H+PGR+ KQ RERW NQL+P ISK
Sbjct:   12 AIEANGTRKWSVLASHLPGRTGKQCRERWHNQLNPDISK 50
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BLAST of jgi.p|Trimin1|163730 vs. uniprot
Match: A0A835Z1Q6_9STRA (Homeodomain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1Q6_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 1.360e-7
Identity = 22/46 (47.83%), Postives = 32/46 (69.57%), Query Frame = 1 
Query:   22 RGTKKWAEIATHIPGRSNKQRRERWLNQLDPTISKITSTTKLGANL 159
            RG K W ++A H+PGR++KQ RERW++ LDP I+K   T +  A +
Sbjct:    3 RGYKNWGQLAAHMPGRTSKQCRERWIHHLDPAINKSDYTAEEDAKI 48
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BLAST of jgi.p|Trimin1|163730 vs. uniprot
Match: A0A7S3LTQ8_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3LTQ8_9EUKA)

HSP 1 Score: 55.1 bits (131), Expect = 2.140e-7
Identity = 23/34 (67.65%), Postives = 28/34 (82.35%), Query Frame = 1 
Query:   25 GTKKWAEIATHIPGRSNKQRRERWLNQLDPTISK 126
            GTK+W+ +A H+PGR+ KQ RERWLNQLDP I K
Sbjct:   24 GTKRWSFVANHLPGRTGKQIRERWLNQLDPNIRK 57
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BLAST of jgi.p|Trimin1|163730 vs. uniprot
Match: M8C9W6_AEGTA (Transcription factor MYB98 n=1 Tax=Aegilops tauschii TaxID=37682 RepID=M8C9W6_AEGTA)

HSP 1 Score: 52.0 bits (123), Expect = 3.230e-7
Identity = 23/42 (54.76%), Postives = 29/42 (69.05%), Query Frame = 1 
Query:    7 ISVAERGTKKWAEIATHIPGRSNKQRRERWLNQLDPTISKIT 132
            + V E G  +WAE+  ++PGRS KQ RERW NQLDP I  I+
Sbjct:   52 VKVQEFGLGRWAEVTLYLPGRSGKQCRERWTNQLDPNIEVIS 93
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BLAST of jgi.p|Trimin1|163730 vs. uniprot
Match: F0Y100_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y100_AURAN)

HSP 1 Score: 51.6 bits (122), Expect = 3.750e-7
Identity = 23/42 (54.76%), Postives = 30/42 (71.43%), Query Frame = 1 
Query:   13 VAERGTKKWAEIATHIPGRSNKQRRERWLNQLDPTISKITST 138
            V +RG ++W  IA+ +PGR+ KQ RERW NQLDP +SK   T
Sbjct:   14 VTQRGPRRWPTIASAMPGRTGKQCRERWHNQLDPAVSKAPFT 55
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BLAST of jgi.p|Trimin1|163730 vs. uniprot
Match: Q7XZ94_GRIJA (Transforming protein myb (Fragment) n=1 Tax=Griffithsia japonica TaxID=83288 RepID=Q7XZ94_GRIJA)

HSP 1 Score: 53.5 bits (127), Expect = 3.750e-7
Identity = 23/38 (60.53%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:   13 VAERGTKKWAEIATHIPGRSNKQRRERWLNQLDPTISK 126
            VA+ G ++W  IA+HIPGR+ KQ RERWLNQL P ++K
Sbjct:   24 VAKLGPRRWTVIASHIPGRTGKQARERWLNQLSPDLAK 61
[Close]
BLAST of jgi.p|Trimin1|163730 vs. uniprot
Match: A0A7S0ZEJ7_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZEJ7_9RHOD)

HSP 1 Score: 53.9 bits (128), Expect = 3.930e-7
Identity = 24/42 (57.14%), Postives = 31/42 (73.81%), Query Frame = 1 
Query:   13 VAERGTKKWAEIATHIPGRSNKQRRERWLNQLDPTISKITST 138
            V + G ++W+ IA HIPGR+ KQ RERWLNQL P ++KI  T
Sbjct:  121 VEKMGPRRWSLIALHIPGRTGKQARERWLNQLSPALNKIPWT 162
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|163730 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YYE3_9STRA4.910e-31100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CH87_9STRA4.320e-1376.74Homeodomain-like protein (Fragment) n=1 Tax=Tribon... [more]
A0A7S0BN60_9RHOD5.850e-860.00Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
F0Y1Q2_AURAN6.130e-856.41Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A835Z1Q6_9STRA1.360e-747.83Homeodomain-like protein (Fragment) n=1 Tax=Tribon... [more]
A0A7S3LTQ8_9EUKA2.140e-767.65Hypothetical protein (Fragment) n=1 Tax=Palpitomon... [more]
M8C9W6_AEGTA3.230e-754.76Transcription factor MYB98 n=1 Tax=Aegilops tausch... [more]
F0Y100_AURAN3.750e-754.76Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
Q7XZ94_GRIJA3.750e-760.53Transforming protein myb (Fragment) n=1 Tax=Griffi... [more]
A0A7S0ZEJ7_9RHOD3.930e-757.14Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_27contigContig_27:110999..111163 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|163730|e_gw1.27.170.1
BRITEko00000,ko00001,ko03000
KEGG Pathwayko04151,ko04218,ko05166,map04151,map04218,map05166
KEGG koko:K09420,ko:K09422,ko:K21769
GOsGO:0000981,GO:0000988,GO:0000989,GO:0001067,GO:0001076,GO:0001101,GO:0001134,GO:0001135,GO:0003674,GO:0003676,GO:0003677,GO:0003700,GO:0003712,GO:0003713,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006275,GO:0006355,GO:0006357,GO:0008150,GO:0008285,GO:0009605,GO:0009607,GO:0009608,GO:0009610,GO:0009620,GO:0009623,GO:0009719,GO:0009725,GO:0009751,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010033,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0014070,GO:0019219,GO:0019222,GO:0030154,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0032465,GO:0032502,GO:0032875,GO:0042127,GO:0042221,GO:0042493,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043565,GO:0044212,GO:0044424,GO:0044464,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0046677,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0051302,GO:0051704,GO:0051707,GO:0051726,GO:0060255,GO:0065007,GO:0080090,GO:0090329,GO:0097159,GO:0140110,GO:1901181,GO:1901363,GO:1901700,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:2000112,GO:2000113,GO:2001023,GO:2001024,GO:2001038,GO:2001039,GO:2001141
DescriptionMyb-related protein
COG categoryK
Max annot lvl35493|Streptophyta
EggNOG OGsCOG5147@1|root,KOG0048@2759|Eukaryota,37PMK@33090|Viridiplantae,3G7Z4@35493|Streptophyta,4JMV5@91835|fabids
Evalue9.13e-08
Seed ortholog3847.GLYMA14G21523.1
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionSANT/Myb domain transcription factor
Ec32 orthologEc-04_003370.1
TranscriptId164052
TrackFilteredModels1
ProteinId163730
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|163730gene_6878Tribonema minus UTEX_B_3156 geneContig_27 110999..111163 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6878_1exon_6878_1Tribonema minus UTEX_B_3156 exonContig_27 110999..111163 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6878CDS_6878Tribonema minus UTEX_B_3156 CDSContig_27 110999..111163 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|163730Trimin1|163730|e_gw1.27.170.1Tribonema minus UTEX_B_3156 polypeptideContig_27 110999..111163 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6878 ID=mRNA_6878|Name=jgi.p|Trimin1|163730|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=165bp|location=Sequence derived from alignment at Contig_27:110999..111163- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCATCTCCGTTGCTGAACGTGGCACCAAGAAGTGGGCGGAGATCGC
CACACACATCCCTGGACGCAGCAACAAACAGCGTAGGGAAAGGTGGCTTA
ATCAGCTGGACCCGACCATCAGCAAGATAACTTCAACTACAAAGTTAGGT
GCTAACCTCAACTAG
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protein sequence of jgi.p|Trimin1|163730

>Trimin1|163730|e_gw1.27.170.1 ID=Trimin1|163730|e_gw1.27.170.1|Name=jgi.p|Trimin1|163730|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=55bp
MPISVAERGTKKWAEIATHIPGRSNKQRRERWLNQLDPTISKITSTTKLG
ANLN*
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mRNA from alignment at Contig_27:110999..111163-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6878 ID=mRNA_6878|Name=jgi.p|Trimin1|163730|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=165bp|location=Sequence derived from alignment at Contig_27:110999..111163- (Tribonema minus UTEX_B_3156 )
ATGCCCATCTCCGTTGCTGAACGTGGCACCAAGAAGTGGGCGGAGATCGC
CACACACATCCCTGGACGCAGCAACAAACAGCGTAGGGAAAGGTGGCTTA
ATCAGCTGGACCCGACCATCAGCAAGATAACTTCAACTACAAAGTTAGGT
GCTAACCTCAACTAG
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Coding sequence (CDS) from alignment at Contig_27:110999..111163-

>mRNA_6878 ID=mRNA_6878|Name=jgi.p|Trimin1|163730|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=165bp|location=Sequence derived from alignment at Contig_27:110999..111163- (Tribonema minus UTEX_B_3156 )
ATGCCCATCTCCGTTGCTGAACGTGGCACCAAGAAGTGGGCGGAGATCGC
CACACACATCCCTGGACGCAGCAACAAACAGCGTAGGGAAAGGTGGCTTA
ATCAGCTGGACCCGACCATCAGCAAGATAACTTCAACTACAAAGTTAGGT
GCTAACCTCAACTAG
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