mRNA_6874 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|129379
Unique NamemRNA_6874
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|129379 vs. uniprot
Match: A0A836CH87_9STRA (Homeodomain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH87_9STRA)

HSP 1 Score: 187 bits (475), Expect = 2.480e-60
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 1 
Query:    1 EEDDLLTALVAQHGLKKWAEIAKHIPGRSNTQCRERWLNQLDPKISKRKWTTDDEEELYKAHAALGPQWAQIAKQLPGRSTLAVKNRVNS 270
            EEDDLLTALVAQHGLKKWAEIAKHIPGRSNTQCRERWLNQLDPKISKRKWTTDDEEELYKAHAALGPQWAQIAKQLPGRSTLAVKNRVNS
Sbjct:    1 EEDDLLTALVAQHGLKKWAEIAKHIPGRSNTQCRERWLNQLDPKISKRKWTTDDEEELYKAHAALGPQWAQIAKQLPGRSTLAVKNRVNS 90
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BLAST of jgi.p|Trimin1|129379 vs. uniprot
Match: A0A7J7Q8H4_9CHLO (Homeodomain-like protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7Q8H4_9CHLO)

HSP 1 Score: 108 bits (271), Expect = 2.550e-27
Identity = 47/90 (52.22%), Postives = 66/90 (73.33%), Query Frame = 1 
Query:    1 EEDDLLTALVAQHGLKKWAEIAKHIPGRSNTQCRERWLNQLDPKISKRKWTTDDEEELYKAHAALGPQWAQIAKQLPGRSTLAVKNRVNS 270
            EED L+  LVA+HG KKW+ IA  +PGR   QCRERW N L+P I++ +WT +++E+L   HA++G QWAQ+A+ +PGR+  A+KN  NS
Sbjct:  136 EEDSLIVGLVAEHGAKKWSLIATSLPGRIGKQCRERWHNHLNPDINRAEWTREEDEQLVMLHASIGNQWAQLARNMPGRTDNAIKNHWNS 225
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BLAST of jgi.p|Trimin1|129379 vs. uniprot
Match: A0A7S0BN60_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BN60_9RHOD)

HSP 1 Score: 102 bits (255), Expect = 5.600e-26
Identity = 47/89 (52.81%), Postives = 65/89 (73.03%), Query Frame = 1 
Query:    4 EDDLLTALVAQHGLKKWAEIAKHIPGRSNTQCRERWLNQLDPKISKRKWTTDDEEELYKAHAALGPQWAQIAKQLPGRSTLAVKNRVNS 270
            ED LL  LV ++G ++W EIA HI GR+  Q RERWLNQL+P+++K  W+  ++  + +AHA LG +WA+IAK LPGR+  AVKNR N+
Sbjct:   30 EDRLLVELVQKYGARRWTEIATHIHGRTGKQARERWLNQLNPQLTKTTWSESEDRVITEAHAKLGNRWAEIAKLLPGRTDNAVKNRFNT 118
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BLAST of jgi.p|Trimin1|129379 vs. uniprot
Match: UPI001C058B2A (v-myb avian myeloblastosis viral oncogene homolog-like 2a isoform X1 n=2 Tax=Melanotaenia boesemani TaxID=1250792 RepID=UPI001C058B2A)

HSP 1 Score: 108 bits (271), Expect = 1.030e-25
Identity = 47/90 (52.22%), Postives = 66/90 (73.33%), Query Frame = 1 
Query:    1 EEDDLLTALVAQHGLKKWAEIAKHIPGRSNTQCRERWLNQLDPKISKRKWTTDDEEELYKAHAALGPQWAQIAKQLPGRSTLAVKNRVNS 270
            EED+ +T LV ++G+K W ++AKH+ GR   QCRERW+N LDP I K  WT +++  +YKAH+ LG +WA+I++ LPGRS  +VKN  NS
Sbjct:   87 EEDEKITELVGKYGVKSWTKVAKHLKGRLGKQCRERWINHLDPMIKKSSWTEEEDLIVYKAHSVLGNRWAEISRLLPGRSDNSVKNHWNS 176
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BLAST of jgi.p|Trimin1|129379 vs. uniprot
Match: A0A804JP36_MUSAM ((wild Malaysian banana) hypothetical protein n=2 Tax=Musa acuminata subsp. malaccensis TaxID=214687 RepID=A0A804JP36_MUSAM)

HSP 1 Score: 107 bits (266), Expect = 1.410e-25
Identity = 47/90 (52.22%), Postives = 66/90 (73.33%), Query Frame = 1 
Query:    1 EEDDLLTALVAQHGLKKWAEIAKHIPGRSNTQCRERWLNQLDPKISKRKWTTDDEEELYKAHAALGPQWAQIAKQLPGRSTLAVKNRVNS 270
            EED +L  LV QHG++KW++IAK++ GR   QCRERW N L P I K  WT ++E++L +AH + G +WA+IAKQ+PGRS  ++KN  N+
Sbjct:   84 EEDSMLVRLVKQHGVRKWSQIAKNLVGRIGKQCRERWHNHLRPDIKKDMWTEEEEKQLVEAHMSFGNRWAEIAKQIPGRSENSIKNHWNA 173
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BLAST of jgi.p|Trimin1|129379 vs. uniprot
Match: T0RY80_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0RY80_SAPDV)

HSP 1 Score: 105 bits (262), Expect = 1.680e-25
Identity = 46/86 (53.49%), Postives = 63/86 (73.26%), Query Frame = 1 
Query:    1 EEDDLLTALVAQHGLKKWAEIAKHIPGRSNTQCRERWLNQLDPKISKRKWTTDDEEELYKAHAALGPQWAQIAKQLPGRSTLAVKN 258
            EEDD +  L+A +G +KWA IA ++PGR+  QCRERW NQL+P I +  W+ D+E  L+K  A LG +WAQIAKQ+PGR+  ++KN
Sbjct:   74 EEDDRMAELIASYGARKWAVIASYLPGRNGKQCRERWHNQLNPAIKRDAWSQDEEATLFKMQAKLGNRWAQIAKQMPGRTDNSIKN 159
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BLAST of jgi.p|Trimin1|129379 vs. uniprot
Match: A0A383WD91_TETOB (Uncharacterized protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383WD91_TETOB)

HSP 1 Score: 108 bits (269), Expect = 1.950e-25
Identity = 48/90 (53.33%), Postives = 66/90 (73.33%), Query Frame = 1 
Query:    1 EEDDLLTALVAQHGLKKWAEIAKHIPGRSNTQCRERWLNQLDPKISKRKWTTDDEEELYKAHAALGPQWAQIAKQLPGRSTLAVKNRVNS 270
            EED L+  LVA HG KKW+ IA ++PGR   QCRERW N L+P I++ +WT +++E+L   HA++G QWAQ+A+ LPGR+  A+KN  NS
Sbjct:  105 EEDRLIIELVATHGAKKWSLIASNLPGRIGKQCRERWHNHLNPDINRSEWTREEDEQLVALHASIGNQWAQLARNLPGRTDNAIKNHWNS 194
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BLAST of jgi.p|Trimin1|129379 vs. uniprot
Match: A0A7S3GCM0_9EUKA (Hypothetical protein n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3GCM0_9EUKA)

HSP 1 Score: 105 bits (263), Expect = 2.270e-25
Identity = 46/89 (51.69%), Postives = 66/89 (74.16%), Query Frame = 1 
Query:    4 EDDLLTALVAQHGLKKWAEIAKHIPGRSNTQCRERWLNQLDPKISKRKWTTDDEEELYKAHAALGPQWAQIAKQLPGRSTLAVKNRVNS 270
            ED+ L +LV ++G KKWA++A+++PGR+  QCRERW N LDP I +  WT ++  +L +AH+ LG +WA+IAK LPGR+  A+KN  NS
Sbjct:  134 EDERLKSLVKEYGDKKWADVARNLPGRNGKQCRERWHNHLDPNIKREPWTEEENSKLLEAHSRLGNKWAEIAKLLPGRTDNAIKNHWNS 222
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BLAST of jgi.p|Trimin1|129379 vs. uniprot
Match: A0A667X3P8_9TELE (Uncharacterized LOC115362368 n=2 Tax=Myripristis murdjan TaxID=586833 RepID=A0A667X3P8_9TELE)

HSP 1 Score: 107 bits (268), Expect = 2.600e-25
Identity = 49/90 (54.44%), Postives = 64/90 (71.11%), Query Frame = 1 
Query:    1 EEDDLLTALVAQHGLKKWAEIAKHIPGRSNTQCRERWLNQLDPKISKRKWTTDDEEELYKAHAALGPQWAQIAKQLPGRSTLAVKNRVNS 270
            EEDD +  LV ++G K W+ IAKH+ GR   QCRERWLN LDP + K  WT++++  +YKAH  LG +WA+IAK LPGR+  A+KN  NS
Sbjct:   88 EEDDQIIELVEKYGTKHWSMIAKHLKGRVGKQCRERWLNHLDPLVKKSSWTSEEDLIIYKAHNILGNRWAEIAKLLPGRTDNAIKNHWNS 177
[Close]
BLAST of jgi.p|Trimin1|129379 vs. uniprot
Match: UPI001262FA38 (transcription factor MYB3R-5-like n=1 Tax=Pistacia vera TaxID=55513 RepID=UPI001262FA38)

HSP 1 Score: 107 bits (267), Expect = 3.060e-25
Identity = 49/89 (55.06%), Postives = 61/89 (68.54%), Query Frame = 1 
Query:    1 EEDDLLTALVAQHGLKKWAEIAKHIPGRSNTQCRERWLNQLDPKISKRKWTTDDEEELYKAHAALGPQWAQIAKQLPGRSTLAVKNRVN 267
            EEDDL+  LV + G KKWAEIAKH+PGR   QCRERW N L+P I +  WT ++E  L K H   G +WA+IAK LPGR+  ++KN  N
Sbjct:  104 EEDDLIIELVEKQGKKKWAEIAKHLPGRIGKQCRERWHNHLNPDIKRTAWTKEEESTLIKCHGTYGNKWAEIAKFLPGRTENSIKNHWN 192
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|129379 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CH87_9STRA2.480e-60100.00Homeodomain-like protein (Fragment) n=1 Tax=Tribon... [more]
A0A7J7Q8H4_9CHLO2.550e-2752.22Homeodomain-like protein n=1 Tax=Scenedesmus sp. N... [more]
A0A7S0BN60_9RHOD5.600e-2652.81Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
UPI001C058B2A1.030e-2552.22v-myb avian myeloblastosis viral oncogene homolog-... [more]
A0A804JP36_MUSAM1.410e-2552.22(wild Malaysian banana) hypothetical protein n=2 T... [more]
T0RY80_SAPDV1.680e-2553.49Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
A0A383WD91_TETOB1.950e-2553.33Uncharacterized protein n=1 Tax=Tetradesmus obliqu... [more]
A0A7S3GCM0_9EUKA2.270e-2551.69Hypothetical protein n=1 Tax=Palpitomonas bilix Ta... [more]
A0A667X3P8_9TELE2.600e-2554.44Uncharacterized LOC115362368 n=2 Tax=Myripristis m... [more]
UPI001262FA383.060e-2555.06transcription factor MYB3R-5-like n=1 Tax=Pistacia... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_27contigContig_27:79755..81489 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|129379|gw1.27.6.1
DescriptionV-myb avian myeloblastosis viral oncogene
COG categoryK
Max annot lvl33154|Opisthokonta
EggNOG OGsCOG5147@1|root,KOG0048@2759|Eukaryota,38EUR@33154|Opisthokonta
Evalue1.93e-27
Seed ortholog81824.XP_001747622.1
Hectar predicted targeting categoryother localisation
TranscriptId129701
TrackFilteredModels1
ProteinId129379
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|129379gene_6874Tribonema minus UTEX_B_3156 geneContig_27 79755..81489 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6874_1exon_6874_1Tribonema minus UTEX_B_3156 exonContig_27 79755..79895 +
exon_6874_2exon_6874_2Tribonema minus UTEX_B_3156 exonContig_27 81361..81489 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6874CDS_6874Tribonema minus UTEX_B_3156 CDSContig_27 79755..79895 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|129379Trimin1|129379|gw1.27.6.1Tribonema minus UTEX_B_3156 polypeptideContig_27 79755..81489 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6874 ID=mRNA_6874|Name=jgi.p|Trimin1|129379|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=270bp|location=Sequence derived from alignment at Contig_27:79755..81489+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GAGGAGGATGATCTGCTGACTGCTCTTGTCGCTCAACATGGCCTCAAGAA
GTGGGCGGAGATTGCCAAACACATCCCTGGCCGTAGCAACACTCAGTGCA
GGGAGAGGTGGCTTAACCAGCTGGACCCGAAGATCAGCAAGAGGAAGTGG
ACCACAGATGACGAAGAAGAGCTCTATAAAGCACATGCTGCGCTTGGACC
CCAGTGGGCTCAAATTGCCAAGCAGCTGCCTGGACGTTCGACGCTCGCTG
TCAAAAACCGCGTCAACTCC
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protein sequence of jgi.p|Trimin1|129379

>Trimin1|129379|gw1.27.6.1 ID=Trimin1|129379|gw1.27.6.1|Name=jgi.p|Trimin1|129379|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=90bp
EEDDLLTALVAQHGLKKWAEIAKHIPGRSNTQCRERWLNQLDPKISKRKW
TTDDEEELYKAHAALGPQWAQIAKQLPGRSTLAVKNRVNS
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mRNA from alignment at Contig_27:79755..81489+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6874 ID=mRNA_6874|Name=jgi.p|Trimin1|129379|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1735bp|location=Sequence derived from alignment at Contig_27:79755..81489+ (Tribonema minus UTEX_B_3156 )
GAGGAGGATGATCTGCTGACTGCTCTTGTCGCTCAACATGGCCTCAAGAA
GTGGGCGGAGATTGCCAAACACATCCCTGGCCGTAGCAACACTCAGTGCA
GGGAGAGGTGGCTTAACCAGCTGGACCCGAAGATCAGCAAGGTAATGCTT
CTGGGGGCTGAACAACTTTCAAATAACTGTGCACGCAAGCATATAACCAA
TCTGAAGCATCTGAGGCAGCAAAGCGACCGAGCGAAGCCCGTTCTTTCAC
CAAAATGACAGCAGAACTGTTACTCTTTCAGAACATGGACGCACAGCTGT
GAGTGGTCACCGTTCTGTCATTGTGCTGATCATGCACACGCATACATGCA
CCAGGAATGATAGCTCACCAATGGGTGTTTGTGTAGCCTCAAGGGTCTGT
CAGTAATTTGCTGTAGAAGTATGGCATGATACGCTACTGTTCTGCTGCAG
GAAGGCCTTGGCAAACGTGATCATGATGGGAAGACTACAAGCTTCTGTAC
CCACACAATACTGCGCAGGCCTAAGGCTTTTATGCTACAGGGCAAACACA
CACGACATGGAAGATTTAAAGGTCCGAGTGAGCAGCTATGGTCCGTTGTG
CTGCACTGTTGCTGTCATCAAGGTTGATTTCCGCACAATTGATGTTAGCG
CACAATGACGGCTGATTTGAGCACAAATGATGTAAATACACACATTCTCT
TATGCAGCTGACCAGATACTGGCTGCGCTGCAGACCTACAGCATCATCAT
ACCCCACGATATGTACTGGTGTGTCATGCTCAAACATAAATATGATGGCA
CTGTTTGACTTGTGAACAATGACTGCAATAGCGGCGACCACAGTTATCGG
TGGAAGGGCATTTGCGGCTAATCACTCCTTGTCACCTAGAGCTCTACGAT
CTTTTGATTCATTACCATAAATCACATATTTTTTAGAAGTATCATACAGA
ACCTGACTCAATTTCAAACGCACAAAGCCTCATGTGCGTCAAAGGATGTG
TGACATCAGCAAAGCAGAAAGCCAACTGGCACATCCTGCGACTGTCAAAC
TACATCACGTCAGTCATCAAAGTATGTATTGTTATACTGCAAGTGAGTGC
ATGTGACAGTGTATACTATAGACTATAGGTCGCCACTGCGCCAGAGATAG
AGGACCGACCAATGGACTCAAGCAGACACAAGACTCGCGGCAGTGCTTCA
TTTGCTGAAGGTTCTAAGTAGAAGTGATTATTGAGAACCAGGCGGCAAAA
TATGAACAGCCACGTCAGTGCCCAACATGGCCCAACCTCAACATGAGCTG
AGCTGTGTGCTGTCACCCTCTCAGGCATTAGCAAGCCCTTGCATGATGAC
TGAACCGGCAAATCGCATGTAATCAAGGACAGCACAAAGTTGCCTCTAAC
GGCAAACGAGAGCGACAAGTGTGGACCTTAACCTTTATGTCTTCACCATC
ACATGTTTGCCAATGATTTCAGGAACTACTGTTTTCTCAATGTGCGCTCC
GACGCAAAACTCAGGGACCGCAACAGATGCTTGTGCGCTTTCAGTCACTA
TTTAGCGCAAGATATTATTGTATTTTTTTTTTTGTTATGATTGTTGCTGC
TTGCAGAGGAAGTGGACCACAGATGACGAAGAAGAGCTCTATAAAGCACA
TGCTGCGCTTGGACCCCAGTGGGCTCAAATTGCCAAGCAGCTGCCTGGAC
GTTCGACGCTCGCTGTCAAAAACCGCGTCAACTCC
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Coding sequence (CDS) from alignment at Contig_27:79755..81489+

>mRNA_6874 ID=mRNA_6874|Name=jgi.p|Trimin1|129379|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=270bp|location=Sequence derived from alignment at Contig_27:79755..81489+ (Tribonema minus UTEX_B_3156 )
GAGGAGGATGATCTGCTGACTGCTCTTGTCGCTCAACATGGCCTCAAGAA
GTGGGCGGAGATTGCCAAACACATCCCTGGCCGTAGCAACACTCAGTGCA
GGGAGAGGTGGCTTAACCAGCTGGACCCGAAGATCAGCAAGAGGAAGTGG
ACCACAGATGACGAAGAAGAGCTCTATAAAGCACATGCTGCGCTTGGACC
CCAGTGGGCTCAAATTGCCAAGCAGCTGCCTGGACGTTCGACGCTCGCTG
TCAAAAACCGCGTCAACTCC
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