mRNA_6873 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|348554
Unique NamemRNA_6873
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|348554 vs. uniprot
Match: A0A836CEN5_9STRA (Kinetochore protein NDC80 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEN5_9STRA)

HSP 1 Score: 1079 bits (2790), Expect = 0.000e+0
Identity = 623/623 (100.00%), Postives = 623/623 (100.00%), Query Frame = 1
Query:    1 MAAPGRMSLNVGNAMGRGTAAPPPRASLAAVRHSLAAPGGRKSSVGMKRSSNFGTAAIKTDPRPITDKNFRNDSIRALVNYLADYGYDQPISAKILTRPSGRDFNNIMGFLFRQFDPAWQPSPGARFEDEVIPFLKSIHYPFTLSKSLLQAVGAPQSWPKALAAISWIVELLMYDKEVAAYESEQQDRRLAGEVDIADHAFFEYLGQAYACFLNGDETSLTALEQDLVGTFGHQNQLIGAEAQTRQARNAALREATERILSRAGALPELRQRQRDCASDLEKFRLLIAQLDGHRDALVEKVEKRAAEEERAKGDLGGVREQIAALRERVANQELSAERMALSNELSAEDVQRMALERQRLRDGMLAAAEHKSAAQKRGWEAEMQLSRRLEALENAVHTCNSKAQALQLVPAAAKNANGQDYELGINRHSLEDEENVLSNDVRGHIRPALAAMRDAVVRRMQEAREQLLELLDAQEASEXXXXXXXXXXXXXXXXXXXXXXXYRREKDALDAHMAAKATQASALERRLCSARDPQGAAARATAARXXXXXLRGEMQAXXXXXXXXXAATKQEIHEALVVCWDFQDGAKGALAELRAQGEGALSAVAGCGAVERLWELSAERAEE 1869
            MAAPGRMSLNVGNAMGRGTAAPPPRASLAAVRHSLAAPGGRKSSVGMKRSSNFGTAAIKTDPRPITDKNFRNDSIRALVNYLADYGYDQPISAKILTRPSGRDFNNIMGFLFRQFDPAWQPSPGARFEDEVIPFLKSIHYPFTLSKSLLQAVGAPQSWPKALAAISWIVELLMYDKEVAAYESEQQDRRLAGEVDIADHAFFEYLGQAYACFLNGDETSLTALEQDLVGTFGHQNQLIGAEAQTRQARNAALREATERILSRAGALPELRQRQRDCASDLEKFRLLIAQLDGHRDALVEKVEKRAAEEERAKGDLGGVREQIAALRERVANQELSAERMALSNELSAEDVQRMALERQRLRDGMLAAAEHKSAAQKRGWEAEMQLSRRLEALENAVHTCNSKAQALQLVPAAAKNANGQDYELGINRHSLEDEENVLSNDVRGHIRPALAAMRDAVVRRMQEAREQLLELLDAQEASEXXXXXXXXXXXXXXXXXXXXXXXYRREKDALDAHMAAKATQASALERRLCSARDPQGAAARATAARXXXXXLRGEMQAXXXXXXXXXAATKQEIHEALVVCWDFQDGAKGALAELRAQGEGALSAVAGCGAVERLWELSAERAEE
Sbjct:    1 MAAPGRMSLNVGNAMGRGTAAPPPRASLAAVRHSLAAPGGRKSSVGMKRSSNFGTAAIKTDPRPITDKNFRNDSIRALVNYLADYGYDQPISAKILTRPSGRDFNNIMGFLFRQFDPAWQPSPGARFEDEVIPFLKSIHYPFTLSKSLLQAVGAPQSWPKALAAISWIVELLMYDKEVAAYESEQQDRRLAGEVDIADHAFFEYLGQAYACFLNGDETSLTALEQDLVGTFGHQNQLIGAEAQTRQARNAALREATERILSRAGALPELRQRQRDCASDLEKFRLLIAQLDGHRDALVEKVEKRAAEEERAKGDLGGVREQIAALRERVANQELSAERMALSNELSAEDVQRMALERQRLRDGMLAAAEHKSAAQKRGWEAEMQLSRRLEALENAVHTCNSKAQALQLVPAAAKNANGQDYELGINRHSLEDEENVLSNDVRGHIRPALAAMRDAVVRRMQEAREQLLELLDAQEASEXXXXXXXXXXXXXXXXXXXXXXXYRREKDALDAHMAAKATQASALERRLCSARDPQGAAARATAARXXXXXLRGEMQAXXXXXXXXXAATKQEIHEALVVCWDFQDGAKGALAELRAQGEGALSAVAGCGAVERLWELSAERAEE 623          
BLAST of jgi.p|Trimin1|348554 vs. uniprot
Match: D8LLF2_ECTSI (Kinetochore protein NDC80 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLF2_ECTSI)

HSP 1 Score: 310 bits (794), Expect = 3.800e-91
Identity = 209/516 (40.50%), Postives = 290/516 (56.20%), Query Frame = 1
Query:   94 RHSLAAPGGRKSSVGMKRSSNFGTAA-IKTDPRPITDKNFRNDSIRALVNYLADYGYDQPISAKILTRPSGRDFNNIMGFLFRQFDPAWQPSPGARFEDEVIPFLKSIHYPFTLSKSLLQAVGAPQSWPKALAAISWIVELLMYDKEVAAYESEQQDRRLAG---------EVDIADHA-----FFEYLGQAYACFLNGDETSLTALEQDLVGTFGHQNQLIGAEAQTR--QARNAALREATERILSRAGALPELRQRQRDCASDLEKFRLLIAQLDGHRDALVEKVEKRAAEEERAKGDLGGVREQIAALRERVANQELSAERMALSNELSAEDVQRMALERQRLRDGMLAAAEHKSAAQKRGWEAEMQLSRRLEALENAVHTCNSKAQALQLVPAA---AKNANGQDYELGINRHSLEDEENVLSNDVRGHIRPALAAMRDAVVRRMQEAREQLLELLDAQEASEXXXXXXXXXXXXXXXXXXXXXXXYRREKDALDAHMAAKATQASALERRL 1581
            R S++  G RKS VG++R+++FGT    ++D RP+ DK   N S+  L  YL D+GYDQPI++K LTRPSGRDFNNI GFLFRQ DP ++PS   RFED+V+PFLK + YPFT+SKS L AVGAPQ+WPK + AISWIV+ L+YD+ +A  E EQ+ R             E  + D       F  YL +AY CFL GD+ +  A+  +   T     +  GAE   R  +  N AL +  + +L +  +LP L +  +   SD EK   L+ +++ HR  L EKV+KR  EE R K  L  + E  A+LRE++A QE SA            D++    ER RLRD +  A E K  A+K GW A++++S   EAL+  +H    +A+AL LVP     A+NA   +Y + I+   L+ E+ VL+NDVRG IRPAL  ++ A+VRR    R+ L  LL  ++ +E                       Y + K ALD  +A   ++    ERRL
Sbjct:   97 RPSMSTAGDRKS-VGVRRTTSFGTGGGSRSDQRPLMDKAHLNASLHKLAAYLTDHGYDQPINSKSLTRPSGRDFNNITGFLFRQLDPNYRPS--GRFEDDVVPFLKMVRYPFTISKSSLAAVGAPQTWPKVMGAISWIVDALLYDETIAVAEEEQRAREREATPEEXXRDKEDGVDDQGADQKNFVAYLEEAYCCFLEGDDEAHQAVTTEY--TEARDEEDAGAEEFLRNLEEANEALGQTNQELLDQGNSLPALEEGLKLTLSDNEKITSLLEEIETHRRLLQEKVDKRVEEERRLKEPLPLLEEASASLREQIATQEFSAS-----------DMEGQLSERSRLRDALAGAGEAKVKARKEGWSAQVEVSSTKEALKENLHRYREQAEALLLVPFGTQPAENAGETNYAVDIDDTKLDQEDGVLTNDVRGVIRPALKELKIAIVRRTAGLRQDLSNLLVEEDKAEENITDVLSEVELLHKQVKRKEEAYNKSKYALDKQVAGGKSETEHEERRL 596          
BLAST of jgi.p|Trimin1|348554 vs. uniprot
Match: W7TL40_9STRA (Kinetochore protein NDC80 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TL40_9STRA)

HSP 1 Score: 298 bits (762), Expect = 9.230e-87
Identity = 195/495 (39.39%), Postives = 284/495 (57.37%), Query Frame = 1
Query:  121 RKSSVGMKRSSNFGTAAIKTDPRPITDKNFRNDSIRALVNYLADYGYDQPISAKILTRPSGRDFNNIMGFLFRQFDPAWQPSPGARFEDEVIPFLKSIHYPFTLSKSLLQAVGAPQSWPKALAAISWIVELLMYDKEVAAYESEQQDRRLAG-------EVDIADH-AFFEYLGQAYACFLNGDETSLTALEQDLVGTFGHQNQLIGAEAQTRQARNAALREATERILSRAGALPELRQRQRDCASDLEKFRLLIAQLDGHRDALVEKVEKRAAEEERAKGDLGGVREQIAALRERVANQELSAERMALSNELSAEDVQRMALERQRLRDGMLAAAEHKSAAQKRGWEAEMQLSRRLEALENAVHTCNSKAQALQLVPAAAKNANGQDYELGINRHSLE---DEENVLSNDVRGHIRPALAAMRDAVVRRMQEAREQLLELLDAQEASEXXXXXXXXXXXXXXXXXXXXXXXYRREKDALDAHMAAKATQASALE 1572
            RKSS G+++S+ +G+  ++ DPRP TDK +   SIR L+NYL D+ YDQP SAKIL RP+ +DF  I+ FLFRQ D  ++ +   + EDEV+ F K++ YPF +SK+ +QAVG   +WP  LA+I+W+VELL YD+EV    + Q     +G       + + AD  A FEYLG+AY  FL+GD+     LE  LVG+F  +   + A+ Q  + +   +R       +R  ALP L+QR  D  SDL KFR LI QL  HR+ L  KVEKR  E       L  VR Q+  L+  VA QELS E           DV RM  ER RL + +  A EHK+   K  WEAE+++SR +  LE A  T N+KA AL L+P  A+N+NG  YE+ +++ ++    + E ++  D++G IRP+LA +++ ++ ++ EAR  +L++LD +  +E                       Y+ EK  ++A MA K++   A+E
Sbjct:  102 RKSSTGLRKSTAYGSH-VRQDPRPNTDKGYIQASIRGLINYLTDHNYDQPFSAKILQRPTAKDFTYIVSFLFRQVDANFRIT--GKLEDEVLAFFKAMRYPFAISKASMQAVGTMHTWPTLLASITWMVELLTYDEEVQNDAANQAALAGSGSGCGSVDDFERADEKALFEYLGKAYKAFLDGDDDLYAQLEDSLVGSFETRCGEMQAQCQALETKIEDMRTEMAACHTRHAALPGLQQRHSDYLSDLGKFRSLIEQLTAHREGLAAKVEKREEELSSLYRSLEDVRGQVGELKAVVAAQELSPE-----------DVARMQQERARLDEALDKAREHKAKMHKTLWEAEIEVSRAVVDLETAAQTFNTKAAALNLIPITARNSNGIQYEMVVSKGAVSASAEPEELIGLDMKGVIRPSLAQIKNVMLDKVHEARTSVLKMLDEEAKTEEEVAEAVAELETLEGKVKKQEEGYKAEKARMEASMAEKSSNVDAVE 582          
BLAST of jgi.p|Trimin1|348554 vs. uniprot
Match: K3WJZ8_GLOUD (Kinetochore protein NDC80 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WJZ8_GLOUD)

HSP 1 Score: 252 bits (644), Expect = 1.100e-70
Identity = 179/537 (33.33%), Postives = 281/537 (52.33%), Query Frame = 1
Query:  175 KTDPRPITDKNFRNDSIRALVNYLADYGYDQPISAKILTRPSGRDFNNIMGFLFRQFDPAWQPSPGARFEDEVIPFLKSIHYPFTLSKSLLQAVGAPQSWPKALAAISWIVELLMYDKEVAAYESEQQDRRLAG-EVDIADHAFFEYLGQAYACFLNGDETSLTALEQDLVGTFGHQNQLIGAEAQTRQARNAALREATERILSRAGALPELRQRQRDCASDLEKFRLLIAQLDGHRDALVEKVEKRAAEEERAKGDLGGVREQIAALRERVANQELSAERMALSNELSAEDVQRMALERQRLRDGMLAAAEHKSAAQKRGWEAEMQLSRRLEALENAVHTCNSKAQALQLVPAAAKNANGQDYELGINRHS---LEDEENVLSNDVRGHIRPALAAMRDAVVRRMQEAREQLLELLDAQEASEXXXXXXXXXXXXXXXXXXXXXXXYRREKDALDAHMAAKATQASALERRLCSARDPQGAAARATAARXXXXXLRGEMQAXXXXXXXXXAATKQEIHEALVVCWDFQDGAKGALA 1773
            + DPRP+TDK + N  I AL+ +L+D  YD  +S KIL  PS +DF NI+ FLFRQ DP ++   G +FE++V   LK++ YPF +SK+ L AVG+P +WP  L +I+W++ELL YD+ V      Q+D  +   + +  D AFFEYLG AY  FL GD+     LEQ        QNQ+I  E    +  N  L+   E+  S   +LP L  ++ DC SDLEKF+ L+AQL+ H+ +L++K+++R  E  + + +L   + +I  L  R+ +QELSAE           DV++M+ ER RL +    AA+ +   Q   W  E  ++ +++A+EN V   +  A  ++L+P  AKN  G DYE+ I+ H+   +  ++  LS  ++ HIRPAL   +     R   A +++L+L    E S                         RRE++A +A +  K      +E ++ S  + +  A + T +R     L+    +            + E+  ALV C D ++  + A+A
Sbjct:  101 RADPRPLTDKTYMNGCIHALIEFLSDRQYDHVLSPKILKGPSKKDFYNIILFLFRQVDPTFEF--GVKFEEDVATQLKTLRYPFAISKTALVAVGSPHTWPALLGSIAWVIELLSYDEIV------QRDTNVEEFDGENGDKAFFEYLGTAYRVFLAGDDDQYNELEQREATKIDSQNQVIRDECSELERANEELKRRIEQAKSAKSSLPALNSKKADCLSDLEKFKKLVAQLEAHQASLIQKIQERDQERLKKEHELQARQREIQNLTIRIESQELSAE-----------DVEQMSKERARLNEQCHLAAQRQKEIQSNIWRQETTIAEQMDAIENLVKQYSITATNMKLLPVMAKNTFGVDYEIEIDAHTGGVVAAQQ--LSQHLKQHIRPALLNFKKNRSDRRSVALDEVLQLQGDVEHSRAVFNVEYQKEQTLESKAKKMEDTVRREREAREATINQKLAITEDVELQIESILNEKDIATQETQSRQQFEALKKSYVSMTEKYSSLIEKNRHEVANALVSCTDHKETIEQAIA 616          
BLAST of jgi.p|Trimin1|348554 vs. uniprot
Match: A0A1Y1ILS8_KLENI (Kinetochore protein NDC80 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1ILS8_KLENI)

HSP 1 Score: 238 bits (606), Expect = 2.130e-65
Identity = 182/481 (37.84%), Postives = 284/481 (59.04%), Query Frame = 1
Query:  142 KRSSNFGTAA-IKTDPRPITDKNFRNDSIRALVNYLADYGYDQPISAKILTRPSGRDFNNIMGFLFRQFDPAWQPSPGARFEDEVIPFLKSIHYPFTLSKSLLQAVGAPQSWPKALAAISWIVELLMYDKE-VAAYESEQQDRRLAGEVDIADHAFFEYLGQAYACFLNGD--ETSLTALEQDLVGTFGHQNQLIGAEAQTRQARNAALREATERILSRAGALPELRQRQRDCASDLEKFRLLIAQLDGHRDALVEKVEKRAAEEERAKGDLGGVREQIAALRERVANQELSAERMALSNELSAEDVQRMALERQRLRDGMLAAAEHKSAAQKRGWEAEMQLSRRLEALENAVHTCNSKAQALQLVPAAAKNANGQDYELGINRHSLEDEENVLSNDVRGHIRPALAAMRDAVVRRMQEAREQLLELLDAQEASEXXXXXXXXXXXXXXXXXXXXXXXYRREKDALDAHMAAKATQASALE 1572
            +RSS FG+    K DPRP+ DK F+   IR+L+ YL ++GY+  IS K+L+ P+ ++F +I+ FLF + D   +  P  + EDEV    K + YPF +SKS LQAVG+P +WP  LAA++W+V+LL Y++  +AA E +  D       +     F EY+ Q+Y  FL G+  +   + L++ L   F  ++   G + +  +A N ALR   +   ++   L EL +++ +  SD+ KFR LI  L  H D L +KV+++ A       DL   R ++AA+     NQ+L+A   A S  ++AEDV RM+ E+ ++ + +      K   +K  W+AE+QLSR LE LE AV + ++    L+++P+ AK A G  +EL ++  +   E+ +LS D++G I+PALAA++DA   + + A+ ++L L +AQ+ SE     XXXXXXXXXXXXXXXXXX R EK+  +  +   A + +A E
Sbjct:   73 RRSSIFGSRPQAKNDPRPLADKGFQKACIRSLITYLTNHGYNHAISEKLLSTPTSKEFLHIVQFLFHKVDTNIKFGP--KIEDEVPLVFKRLRYPFQISKSALQAVGSPHTWPALLAALAWLVDLLNYEERAIAAKERDAFD-------ESGQRLFLEYVEQSYRLFLEGEARDADASLLDEQLAQQFEVRDAETGVDIERLEAANTALRAELDAARTQPAPLEELERKRENLISDVGKFRKLIENLQAHGDMLRKKVDEKTA-------DLAAKRTELAAVA--AENQDLTARVAAQS--INAEDVARMSKEKLKVEEVLRTVTAQKDRLEKDVWQAEVQLSRHLEELEGAVRSYHAAGDRLKVLPSDAKRAGGLQFELTLHARAARPED-MLSGDLKGVIKPALAAIKDAYTSKTRAAQAEVLGLAEAQDGSEEAVSEXXXXXXXXXXXXXXXXXXXRAEKERGEGEVRGMAAEVAATE 532          
BLAST of jgi.p|Trimin1|348554 vs. uniprot
Match: A0A7S4K7P6_9STRA (Kinetochore protein NDC80 n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4K7P6_9STRA)

HSP 1 Score: 237 bits (604), Expect = 4.820e-65
Identity = 165/503 (32.80%), Postives = 257/503 (51.09%), Query Frame = 1
Query:  106 AAPGGRKSSVGMKRSSNFGTAAIKTDPRPITDKNFRNDSIRALVNYLADYGYDQPISAKILTRPSGRDFNNIMGFLFRQFDPAWQPSPGARFEDEVIPFLKSIHYPFTLSKSLLQAVGAPQSWPKALAAISWIVELL----MYDKEVAAYESEQQDRRLAGEVDIADHAFFEYLGQAYACFLNGDETSLTALEQDLVGTFGHQNQLIGAEAQTRQARNAALREATERILSRAGALPELRQRQRDCASDLEKFRLLIAQLDGHRDALVEKVEKRAAEEERAKGDLGGVREQIAALRERVANQELSAERMALSNELSAEDVQRMALERQRLRDGMLAAAEHKSAAQKRGWEAEMQLSRRLEALENAVHTCNSKAQALQLVPAAAKNANGQDYELGINRHSLEDEENVLSN-DVRGHIRPALAAMRDAVVRRMQEAREQLLELLDAQEASEXXXXXXXXXXXXXXXXXXXXXXXYRREKDALDAHMAAKATQASALERRLCSARDP 1599
            A P  RKS+ G  R S    AA+K DPRPI +K++    I +L+ YL   GY+ P+S K L+RPSGRDFN I+ F+ R  DP++      +FEDEV    KS+ YP+ +SK+ L A G+P +WP  LAA+ W++ELL      ++++   E +     L      ++ AFF YL +AY  FL+ D+    ALE+ LV  F   N  I  E Q     N  ++E  +++L     LPEL+QR+ D A+DLEKF  L+ +L+ H+  L +KVE+R AE  + +  L  +  QI AL+ +V +QE S E           D++RM  E+ R  + +  AA  K+   K  WE   +LS+R++ L   V   N K   L L      N N  + EL  +   + D   + +  D++G + P + +++     +   A+   L+LLD +E +E                       +R+E    +  ++ +  +  A+E ++ S RDP
Sbjct:   63 ATPSRRKSNGGEWRQSLAPQAALKPDPRPIAEKSYMTSCINSLLQYLVSSGYEHPVSRKTLSRPSGRDFNQIVTFILRCIDPSFNDGT-QKFEDEVAMAFKSLGYPYPISKTALVAAGSPHTWPTLLAALMWLIELLGCEDSQEEDILRNEDDATMNSLEEIESRSEKAFFRYLNKAYVAFLSADDPQYEALEEALVEYFEKDNLKIEGEFQRVTETNMEIQEEIKQLLRNGEELPELKQRREDYATDLEKFYDLVKKLEEHKATLRKKVEERTAELVKREEGLQQITAQIDALKRQVQSQEFSVE-----------DIRRMQKEKVRQEESIARAAGAKNEQNKALWEVSTELSQRVDQLRETVEKYNWKVMELHLSAERDSNQNKYELELHTDLAQVGDPAKIFNGVDIKGSVLPMVFSLKCDFAEKCANAKRDTLKLLDQKEQTEKATAHATDCVKELDVKSKECEQLHRQESAENEMVLSNRLKEVDAIETKVFSLRDP 553          
BLAST of jgi.p|Trimin1|348554 vs. uniprot
Match: A0A7R9TIA6_9VIRI (Kinetochore protein NDC80 n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9TIA6_9VIRI)

HSP 1 Score: 225 bits (574), Expect = 4.730e-61
Identity = 161/484 (33.26%), Postives = 248/484 (51.24%), Query Frame = 1
Query:  142 KRSSNFGTAAI-KTDPRPITDKNFRNDSIRALVNYLADYGYDQPISAKILTRPSGRDFNNIMGFLFRQFDPAWQPSPGARFEDEVIPFLKSIHYPFTLSKSLLQAVGAPQSWPKALAAISWIVELLMYDK---EVAAYESEQQDRRLAGEVDIADHAFFEYLGQAYACFLNGDETSLTALEQDLVGTFGHQNQLIGAEAQTRQARNAALREATERILSRAGALPELRQRQRDCASDLEKFRLLIAQLDGHRDALVEKVEKRAAEEERAKGDLGGVREQIAALRERVANQELSAERMALSNELSAEDVQRMALERQRLRDGMLAAAEHKSAAQKRGWEAEMQLSRRLEALENAVHTCNSKAQALQLVPAAAKNANGQDYELGINRHSLEDEENVLSNDVRGHIRPALAAMRDAVVRRMQEAREQLLELLDAQEASEXXXXXXXXXXXXXXXXXXXXXXXYRREKDALDAHMAAKATQASALERRL 1581
            +RSS +    + + DPRP +DK +    IR L+ YL+ +GYD PIS K+L  P+ +DF +I+ FLFR+ DP  +     + EDEV    K + YPF +SKS L AVG+P +WP  LAA+ W+VELL+Y++   E  A  S  +D    G        FFEY+ +AY  FL GD+ + TALE++L  TF  ++     E    +  NAAL+   E   +    L   ++++ +   D+ KF+ LI+ L  H+  L +K  +R AE E    +L      +  LR RVANQ +S +           DV+RM  +R R+ D +  A      A+++       ++ + E LE       SK +ALQ++PA AK ANG D+ L +N +  +    V + D+ G +RPALA + +   +R +E R +LL+L + Q  +                        Y  EK+  DA  A + + A+++E  L
Sbjct:   39 RRSSIYSRGPVARADPRPTSDKAYTQQGIRTLIAYLSSHGYDAPISPKLLAAPTSKDFMHIVSFLFRRLDPNIKFV--GKMEDEVPQVFKRLQYPFQISKSALYAVGSPHTWPGLLAALVWLVELLVYEERAEEARAAGSSGEDATAPGP-----RQFFEYVSKAYGAFLAGDDDTCTALEEELGETFRQRDAAAADEIARLEKANAALKAEIEAADTEPTPLARAQEKRANMEGDVAKFQKLISNLQTHKAQLAKKCGERMAEAEAKAAELKEALAVVDNLRARVANQAVSQD-----------DVKRMQRDRARINDELRGAVASHEDAERQADANAAAVAAKSEELEAIASEYTSKGEALQVLPAGAKRANGVDFTLVMNPNGAD----VCATDLEGSVRPALADVVEEYAQRTREDRRELLDLQEQQHKTTESLAEAREANAQARSELMALEERYTLEKERADADFAQQTSAAASVEEEL 500          
BLAST of jgi.p|Trimin1|348554 vs. uniprot
Match: A0A7S3PLI3_9STRA (Kinetochore protein NDC80 (Fragment) n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PLI3_9STRA)

HSP 1 Score: 223 bits (569), Expect = 1.430e-60
Identity = 151/449 (33.63%), Postives = 251/449 (55.90%), Query Frame = 1
Query:  121 RKSSVGM--------KRSSNFGTAAIKTDPRPITDKNFRNDSIRALVNYLADYGYDQPISAKILTRPSGRDFNNIMGFLFRQFDPAWQPSPGARFEDEVIPFLKSIHYPFTLSKSLLQAVGAPQSWPKALAAISWIVELLMYDKEVAAYESEQQDRRLAGEVDI--ADHAFFEYLGQAYACFLNGDETSLTALEQDLVGTFGHQNQLIGAEAQTRQARNAALREATERILSRAGALPELRQRQRDCASDLEKFRLLIAQLDGHRDALVEKVEKRAAEEERAKGDLGGVREQIAALRERVANQELS-AERMALSNELSAEDVQRMALERQRLRDGMLAAAEHKSAAQKRGWEAEMQLSRRLEALENAVHTCNSKAQALQLVPAAAKNANGQDYELGINRHSLEDEENVLSNDVRGHIRPALAAMRDAVVRRMQEAREQLLELLDAQEASE 1434
            RKSSVG         ++SS + +  +K DPRPI++K F + SIR L+ +L+++ YD PIS K+L+RP+G+DF N++ FLF   D   +   G +F DEV P  K + YPF +SK+ L AVG+  +WP  LA++ W++ELL Y          + +R    E+D+   D  FF YL QAY  FL GD+     L+ +L+GTFG ++  I  +    + +   L +  ++I +   +LP L  +++D   DL KF+ L+ +L  H++ L  K+    AE    + +L       A L++++  QELS A+   + +E  A  V++  + ++R  +GM          QK  WE EM ++++LE LEN     N  A  L+LVP +A+N+ G D+EL +N     + E++L+ DV+  ++ +L +++D+ + +  E + Q +E  +  E +E
Sbjct:   87 RKSSVGTNLSSHNSGRQSSVYSSTVLKNDPRPISNKGFMHASIRKLIQFLSEHNYDHPISPKVLSRPTGKDFQNVLQFLFLLVDRNLKF--GQKFTDEVPPIFKGLCYPFNISKTALSAVGSLHTWPPLLASLIWLMELLEYH---------EAERHRESEIDLENGDKVFFTYLRQAYQSFLCGDDDKSEELDNELLGTFGERDSAIQEQTSQLETQREDLLKDLDKIKNSKSSLPALTCQKKDYQEDLVKFQGLVKKLREHKENLEGKLRSSEAEFNARQQELNEALSVKAKLQKQLDEQELSPADAERIISEREAATVEQGQVNQKR--EGM----------QKSAWEIEMTIAKKLEQLENMTSKYNEVAARLKLVPKSAQNSQGVDFELKLNLAGFGNGEDLLNVDVKKVLKTSLFSLKDSAMTKTNEIKTQCMEFQEQVEKNE 512          
BLAST of jgi.p|Trimin1|348554 vs. uniprot
Match: A0A5B8MIC0_9CHLO (Kinetochore protein NDC80 n=2 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MIC0_9CHLO)

HSP 1 Score: 224 bits (571), Expect = 1.500e-60
Identity = 152/457 (33.26%), Postives = 252/457 (55.14%), Query Frame = 1
Query:   73 RASLAAVR-HSLAAPGGRKSSVGMKR-SSNFG-TAAIKTDPRPITDKNFRNDSIRALVNYLADYGYDQPISAKILTRPSGRDFNNIMGFLFRQFDPAWQPSPGARFEDEVIPFLKSIHYPFTLSKSLLQAVGAPQSWPKALAAISWIVELLMYDKEVAAYESEQQDRRLAGEVDIADHAFFEYLGQAYACFLNGDETSLTALEQDLVGTFGHQNQLIGAEAQTRQARNAALREATERILSRAGALPELRQRQRDCASDLEKFRLLIAQLDGHRDALVEKVEKRAAEEERAKGDLGGVREQIAALRERVANQELSAERMALSNELSAEDVQRMALERQRLRDGMLAAAEHKSAAQKRGWEAEMQLSRRLEALENAVHTCNSKAQALQLVPAAAKNANGQDYELGINRHSLEDEENVLSNDVRGHIRPALAAMRDAVVRRMQEAREQLLELLDAQEASE 1434
            RASLA V  H+     GRK+  G +R SS FG +   K DPRP+TDK + ND +RAL++YL  +GYD P+S K LT P+ +DF  I+ FLF++ D + +     + E+EV    K + YPF +S+S L AVG+P SWP  LAA++W+VELL Y+++ A    +  D     E D +   FFE++G++Y  FL+GD+     LE +L  TF  +++ I AE +  +     L+ +   + ++   L  L+Q++RD  SD+ KF  LI +L  H++A+ +K   R                      E V++Q ++ E           DV RMA +R +L+D + +    K +      E E +  +++E LE      +  A  LQL+P+ AK+A G ++++ +N  SL+D   V + D++  ++PAL A+R++  ++ +   E++ E+ +  +++E
Sbjct:   40 RASLAGVPGHNGPKTPGRKTPGGTRRRSSIFGWSQQSKHDPRPLTDKQYLNDCVRALISYLTTHGYDNPVSPKTLTHPTCKDFVQIVTFLFKKVDASLKIV--GKMEEEVPQIFKKLKYPFPISRSALYAVGSPHSWPSLLAALTWLVELLNYEEKAAEVREKSVDNF---ECDTSSRDFFEFVGKSYKSFLSGDDGECFVLEDELRATFQEKDKEIIAEVERHEQEIEGLKGSIAGLTAKPTPLEALQQKRRDLDSDINKFESLITKLKEHKEAVEQKTRDRXXXXXXXXXXXXXXXXXXXXXXEVVSSQSINKE-----------DVHRMAQQRSKLQDILQSLTSQKDSLLDAALEDEAKFEKKVEELEGTTRQYHVMADRLQLIPSTAKHAEGVNFQIKLNA-SLDDPSEVFNVDMKNKLKPALNALRESYAKKTRLVTEEMTEIQEKVDSAE 479          
BLAST of jgi.p|Trimin1|348554 vs. uniprot
Match: A0A0D2JWS7_9CHLO (Kinetochore protein NDC80 n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2JWS7_9CHLO)

HSP 1 Score: 209 bits (532), Expect = 6.920e-56
Identity = 154/517 (29.79%), Postives = 250/517 (48.36%), Query Frame = 1
Query:  142 KRSSNFGT--AAIKTDPRPITDKNFRNDSIRALVNYLADYGYDQPISAKILTRPSGRDFNNIMGFLFRQFDPAWQPSPGARFEDEVIPFLKSIHYPFTLSKSLLQAVGAPQSWPKALAAISWIVELLMYDKEVAAYESEQQDRRLAGEVDI----ADHAFFEYLGQAYACFLNGDETSLTALEQDLVGTFGHQNQLIGAEAQTRQARNAALREATERILSRAGALPELRQRQRDCASDLEKFRLLIAQLDGHRDALVEKVEKRAAEEERAKGDLGGVREQIAALRERVANQELSAERMALSNELSAEDVQRMALERQRLRDGMLAAAEHKSAAQKRGWEAEMQLSRRLEALENAVHTCNSKAQA----------------------------------LQLVPAAAKNANGQDYELGINRHSLEDEENVLSNDVRGHIRPALAAMRDAVVRRMQEAREQLLELLDAQEASEXXXXXXXXXXXXXXXXXXXXXXXYRREKDALDAHMAAKATQASALE 1572
            +RSS FG   A +K DPRP+ DKNF N  IR ++ YL+ +GY   +S KILT P+G+DF  I+ FLF++FDP+ +     + EDEV  F K ++YPF +SKS L AVG+P SWP  LAA++W+VELL Y+++    E    D    G +D     ++ AF+EY+  +Y  FL+GD+      +++++G    +   + +E +  +  + AL    E + +    L      + +C+ D  KF   +  +   +     KVE+R AE    K  L  + ++   LR ++ANQ LS             DV R+  ER +L+  + +  E +   ++R +E E+++ R L+ LE +V   N  A +                                  L L+PA+AK A G ++EL ++R   E  + ++  D++G I+P L A+R+    R ++  E  L L +  +A+                        YR  +D LD  M     QA  ++
Sbjct:    4 RRSSAFGKGGAGLKADPRPLGDKNFLNACIRTVITYLSTHGYPYAVSPKILTSPTGKDFAQIVQFLFQRFDPSMKVF--GKVEDEVPLFFKRLNYPFQISKSALFAVGSPHSWPSVLAALTWLVELLNYEEKA---EEAAADPAGPGSLDSDRQRSERAFYEYVAGSYRSFLSGDDVRCAQADEEMLGQIRDREGALTSELERLRESSDALGRTLESLRTAPSPLVAATAARDECSRDKAKFEAALENMRAAKVTCARKVEERKAELTSRKQQLADILQENDQLRAQIANQSLSRA-----------DVNRLLAERGKLKGVLDSVVEAREGLERRAYEQELKVERSLKELEESVRQYNLAAHSGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRARLALIPASAKRAGGTNFELSVSRGE-EAPQGLVGADIKGSIKPGLVALRERYRGRARDLAEDGLGLAEQLDAAREAVRERAEDEANAKLQVQRLEVAYRALRDELDGDMRTTGEQADRIK 503          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348554 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CEN5_9STRA0.000e+0100.00Kinetochore protein NDC80 n=1 Tax=Tribonema minus ... [more]
D8LLF2_ECTSI3.800e-9140.50Kinetochore protein NDC80 n=2 Tax=Ectocarpus TaxID... [more]
W7TL40_9STRA9.230e-8739.39Kinetochore protein NDC80 n=2 Tax=Monodopsidaceae ... [more]
K3WJZ8_GLOUD1.100e-7033.33Kinetochore protein NDC80 n=1 Tax=Globisporangium ... [more]
A0A1Y1ILS8_KLENI2.130e-6537.84Kinetochore protein NDC80 n=1 Tax=Klebsormidium ni... [more]
A0A7S4K7P6_9STRA4.820e-6532.80Kinetochore protein NDC80 n=1 Tax=Odontella aurita... [more]
A0A7R9TIA6_9VIRI4.730e-6133.26Kinetochore protein NDC80 n=1 Tax=Prasinoderma col... [more]
A0A7S3PLI3_9STRA1.430e-6033.63Kinetochore protein NDC80 (Fragment) n=1 Tax=Aplan... [more]
A0A5B8MIC0_9CHLO1.500e-6033.26Kinetochore protein NDC80 n=2 Tax=Chloropicon prim... [more]
A0A0D2JWS7_9CHLO6.920e-5629.79Kinetochore protein NDC80 n=1 Tax=Monoraphidium ne... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_27contigContig_27:67107..72613 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|348554|estExt_Genemark1.C_Ctg_270008
BRITEko00000,ko03036
KEGG koko:K11547
GOsGO:0000003,GO:0000070,GO:0000132,GO:0000226,GO:0000228,GO:0000278,GO:0000280,GO:0000775,GO:0000776,GO:0000777,GO:0000778,GO:0000779,GO:0000780,GO:0000793,GO:0000794,GO:0000819,GO:0000940,GO:0000942,GO:0003674,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0006996,GO:0007010,GO:0007017,GO:0007020,GO:0007049,GO:0007051,GO:0007052,GO:0007059,GO:0007080,GO:0007088,GO:0007127,GO:0007163,GO:0007346,GO:0008104,GO:0008150,GO:0008608,GO:0009987,GO:0010564,GO:0010965,GO:0015630,GO:0016043,GO:0022402,GO:0022414,GO:0022607,GO:0030010,GO:0030071,GO:0031109,GO:0031262,GO:0031617,GO:0031974,GO:0031981,GO:0032879,GO:0032880,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0033365,GO:0034501,GO:0034502,GO:0034613,GO:0034622,GO:0040001,GO:0042802,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0045132,GO:0045143,GO:0045787,GO:0045931,GO:0046785,GO:0048285,GO:0048518,GO:0048522,GO:0050000,GO:0050789,GO:0050794,GO:0051128,GO:0051179,GO:0051234,GO:0051258,GO:0051276,GO:0051293,GO:0051294,GO:0051303,GO:0051310,GO:0051315,GO:0051316,GO:0051321,GO:0051383,GO:0051455,GO:0051640,GO:0051641,GO:0051649,GO:0051653,GO:0051656,GO:0051726,GO:0051783,GO:0051983,GO:0060341,GO:0061982,GO:0065003,GO:0065007,GO:0070013,GO:0070727,GO:0071459,GO:0071840,GO:0090068,GO:0090231,GO:0090232,GO:0090266,GO:0090267,GO:0090268,GO:0097435,GO:0098687,GO:0098813,GO:0140013,GO:0140014,GO:1901976,GO:1901978,GO:1901987,GO:1901990,GO:1902099,GO:1902850,GO:1903046,GO:1903047,GO:1903504,GO:1903827,GO:1903829,GO:1905340,GO:1905342,GO:1905818
Preferred nameNDC80
Descriptionattachment of mitotic spindle microtubules to kinetochore
COG categoryD
Max annot lvl2759|Eukaryota
EggNOG OGsCOG5185@1|root,KOG0995@2759|Eukaryota
Evalue3.65e-93
Seed ortholog2880.D8LLF2
Hectar predicted targeting categoryother localisation
TranscriptId348876
TrackFilteredModels1
ProteinId348554
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348554gene_6873Tribonema minus UTEX_B_3156 geneContig_27 67107..72613 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348554Trimin1|348554|estExt_Genemark1.C_Ctg_270008Tribonema minus UTEX_B_3156 polypeptideContig_27 67107..72278 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6873_1exon_6873_1Tribonema minus UTEX_B_3156 exonContig_27 67107..67703 +
exon_6873_2exon_6873_2Tribonema minus UTEX_B_3156 exonContig_27 68004..68402 +
exon_6873_3exon_6873_3Tribonema minus UTEX_B_3156 exonContig_27 69134..69166 +
exon_6873_4exon_6873_4Tribonema minus UTEX_B_3156 exonContig_27 69464..69691 +
exon_6873_5exon_6873_5Tribonema minus UTEX_B_3156 exonContig_27 70348..70520 +
exon_6873_6exon_6873_6Tribonema minus UTEX_B_3156 exonContig_27 71837..72613 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6873CDS_6873Tribonema minus UTEX_B_3156 CDSContig_27 67107..67703 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_6873UTR3_6873Tribonema minus UTEX_B_3156 three_prime_UTRContig_27 72279..72613 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6873 ID=mRNA_6873|Name=jgi.p|Trimin1|348554|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2207bp|location=Sequence derived from alignment at Contig_27:67107..72613+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGCCCCAGGCCGCATGAGCCTCAACGTAGGAAACGCGATGGGGAG
GGGGACTGCAGCGCCACCGCCACGCGCCAGCCTCGCAGCTGTAAGACACA
GCCTGGCAGCACCTGGGGGGCGGAAGAGCAGCGTGGGGATGAAGCGCAGC
AGCAATTTTGGGACTGCCGCCATCAAGACAGACCCTCGTCCGATCACAGA
CAAGAACTTTCGGAACGACAGTATTCGGGCACTAGTCAATTACCTGGCAG
ACTACGGATACGACCAGCCAATCTCTGCCAAAATACTGACTCGCCCCAGC
GGCCGCGATTTCAACAACATAATGGGCTTCCTCTTTCGCCAGTTCGACCC
AGCATGGCAGCCGAGCCCTGGGGCACGCTTTGAGGACGAGGTCATCCCAT
TCCTGAAGAGCATCCACTACCCCTTCACCCTCTCCAAGTCGTTGCTACAG
GCGGTGGGCGCTCCGCAGTCGTGGCCCAAAGCTCTGGCGGCGATCTCATG
GATAGTGGAGCTGCTGATGTACGACAAGGAGGTTGCGGCGTATGAGAGCG
AGCAGCAGGATCGCAGGCTTGCCGGTGAAGTTGACATAGCGGACCACGCG
TTCTTCGAGTACCTCGGCCAGGCCTACGCGTGCTTCCTCAACGGCGACGA
GACCAGCCTCACCGCGCTCGAGCAGGACCTCGTCGGCACCTTTGGCCACC
AGAACCAGCTTATTGGAGCGGAGGCGCAGACGCGGCAGGCGCGCAACGCG
GCGCTGCGCGAGGCCACGGAGAGGATCCTGAGCCGCGCGGGCGCGCTGCC
GGAGCTGCGCCAGCGTCAGCGCGACTGCGCGAGCGACCTGGAAAAGTTCC
GGCTCCTCATCGCTCAGCTGGACGGCCACAGGGACGCGCTAGTGGAGAAG
GTGGAGAAGCGCGCCGCGGAGGAGGAGCGCGCCAAGGGGGACCTGGGGGG
GGTGCGCGAGCAGATTGCGGCGCTGCGCGAGCGCGTGGCTAATCAGGAGC
TGAGCGCGGAGCGCATGGCGCTGAGCAATGAGCTGAGCGCGGAGGACGTG
CAGCGCATGGCGCTGGAGCGTCAGCGCCTGCGCGACGGCATGCTGGCGGC
GGCGGAGCACAAGTCGGCGGCGCAGAAGCGCGGGTGGGAGGCGGAGATGC
AGCTGAGCCGCCGCCTCGAGGCGCTGGAAAATGCGGTGCACACGTGCAAC
TCCAAGGCCCAGGCGCTGCAGCTGGTGCCTGCCGCTGCTAAGAACGCCAA
CGGGCAGGACTACGAGCTGGGCATCAACAGGCACAGCCTGGAGGACGAGG
AGAACGTGCTGAGCAATGACGTGAGGGGGCACATCCGGCCCGCGCTGGCG
GCGATGCGCGACGCGGTGGTGCGGCGCATGCAGGAGGCGCGCGAGCAGCT
GCTGGAGCTGCTCGACGCGCAGGAGGCCAGCGAGGAGCAGCTGAGCGAGC
AGGTGGACGCGCACGCGGCGCTCGAGTCGCGCGTCAAGCGCAGCGAGGAC
GCGTACAGACGCGAGAAGGACGCGCTCGACGCCCACATGGCCGCCAAGGC
CACGCAGGCCTCCGCGCTAGAGCGCCGCCTCTGCAGCGCGCGCGACCCGC
AGGGCGCGGCGGCGCGCGCGACGGCGGCGCGCGCGCGCGCCGCGGCGCTG
CGCGGCGAGATGCAGGCGGCGCGCGCGGCGGCGGCGGCGGCGTCCGCGGC
CACGAAGCAGGAGATCCACGAGGCGCTGGTGGTGTGCTGGGACTTCCAGG
ATGGGGCGAAGGGGGCGCTCGCGGAGCTGCGCGCGCAGGGGGAGGGCGCG
CTGAGCGCTGTCGCGGGGTGCGGCGCCGTGGAACGGCTCTGGGAACTGTC
TGCGGAACGGGCCGAGGAATGAATGCGGCGGGGGTGGCGCTGCATGATGG
CATTTGTCTGGCTGGTAATTGCCAGTGCGTGATTGGGCGGCATACGTATG
TCGTGCGTGGGCTGAGATGATCGCAGCGGCAGGTTTCGGGGCCCAGCACG
CAGAGGCGTGGTGCAGGTGCTGCGCGCAGAGCCATGTACAGTCCTTTGCA
AGATGTGTTGGCAAAGGTGCGGGGAATTTGGCCCAAGCGATCCATTCGAT
GGGTAAGACAACAGGATCAATGGCGTGGTCCTCGTAGATGCGCCGAGGAG
CTGTGCTCCGCCGCCACAATTTGTTTGTTGTGTGTAATGAACCAATAGCT
TGGTGCA
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protein sequence of jgi.p|Trimin1|348554

>Trimin1|348554|estExt_Genemark1.C_Ctg_270008 ID=Trimin1|348554|estExt_Genemark1.C_Ctg_270008|Name=jgi.p|Trimin1|348554|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=624bp
MAAPGRMSLNVGNAMGRGTAAPPPRASLAAVRHSLAAPGGRKSSVGMKRS
SNFGTAAIKTDPRPITDKNFRNDSIRALVNYLADYGYDQPISAKILTRPS
GRDFNNIMGFLFRQFDPAWQPSPGARFEDEVIPFLKSIHYPFTLSKSLLQ
AVGAPQSWPKALAAISWIVELLMYDKEVAAYESEQQDRRLAGEVDIADHA
FFEYLGQAYACFLNGDETSLTALEQDLVGTFGHQNQLIGAEAQTRQARNA
ALREATERILSRAGALPELRQRQRDCASDLEKFRLLIAQLDGHRDALVEK
VEKRAAEEERAKGDLGGVREQIAALRERVANQELSAERMALSNELSAEDV
QRMALERQRLRDGMLAAAEHKSAAQKRGWEAEMQLSRRLEALENAVHTCN
SKAQALQLVPAAAKNANGQDYELGINRHSLEDEENVLSNDVRGHIRPALA
AMRDAVVRRMQEAREQLLELLDAQEASEEQLSEQVDAHAALESRVKRSED
AYRREKDALDAHMAAKATQASALERRLCSARDPQGAAARATAARARAAAL
RGEMQAARAAAAAASAATKQEIHEALVVCWDFQDGAKGALAELRAQGEGA
LSAVAGCGAVERLWELSAERAEE*
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mRNA from alignment at Contig_27:67107..72613+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6873 ID=mRNA_6873|Name=jgi.p|Trimin1|348554|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=5507bp|location=Sequence derived from alignment at Contig_27:67107..72613+ (Tribonema minus UTEX_B_3156 )
ATGGCTGCCCCAGGCCGCATGAGCCTCAACGTAGGAAACGCGATGGGGAG GGGGACTGCAGCGCCACCGCCACGCGCCAGCCTCGCAGCTGTAAGACACA GCCTGGCAGCACCTGGGGGGCGGAAGAGCAGCGTGGGGATGAAGCGCAGC AGCAATTTTGGGACTGCCGCCATCAAGACAGACCCTCGTCCGATCACAGA CAAGAACTTTCGGAACGACAGTATTCGGGCACTAGTCAATTACCTGGCAG ACTACGGATACGACCAGCCAATCTCTGCCAAAATACTGACTCGCCCCAGC GGCCGCGATTTCAACAACATAATGGGCTTCCTCTTTCGCCAGTTCGACCC AGCATGGCAGCCGAGCCCTGGGGCACGCTTTGAGGACGAGGTCATCCCAT TCCTGAAGAGCATCCACTACCCCTTCACCCTCTCCAAGTCGTTGCTACAG GCGGTGGGCGCTCCGCAGTCGTGGCCCAAAGCTCTGGCGGCGATCTCATG GATAGTGGAGCTGCTGATGTACGACAAGGAGGTTGCGGCGTATGAGAGCG AGCAGCAGGATCGCAGGCTTGCCGGTGAAGTTGACATAGCGGACCACGTC CTCGATGACAAGGCAAGTGCCCACCGACTGCACTACGCTGCGCATTCCTT CGTGGAATGACCTGTTTTGTAGGTGTGCCCTGAACTTTATATGTTGCGTC GCTGCTGCCGATGAGCTGACACCTTCAGATTTGAAATTATATGCAGGCAC AACAAACCCACATGACCTCCACAAAACCGCCGCAGTCATGACATGTACGG CGTACGAGTGCCATCACCCCACTGCCATCATCAACTGACGCGCACCGCCC CGTTCCCGCCTACTAACCGCCCCACCCGCCGCCCCGCGCGCGCGCAGGCG TTCTTCGAGTACCTCGGCCAGGCCTACGCGTGCTTCCTCAACGGCGACGA GACCAGCCTCACCGCGCTCGAGCAGGACCTCGTCGGCACCTTTGGCCACC AGAACCAGCTTATTGGAGCGGAGGCGCAGACGCGGCAGGCGCGCAACGCG GCGCTGCGCGAGGCCACGGAGAGGATCCTGAGCCGCGCGGGCGCGCTGCC GGAGCTGCGCCAGCGTCAGCGCGACTGCGCGAGCGACCTGGAAAAGTTCC GGCTCCTCATCGCTCAGCTGGACGGCCACAGGGACGCGCTAGTGGAGAAG GTGGAGAAGCGCGCCGCGGAGGAGGAGCGCGCCAAGGGGGACCTGGGGGG GGTGCGCGAGCAGATTGCGGCGCTGCGCGAGCGCGTGGCTAATCAGGTGA GCGCTGCCGCGGCGGTTGGAAGGCCGTGGGGGGGTTTAGGTCTTTGGGTG CGATGCGCCATGCGCGCACAGATGGGGTGGGGTGGGGGCGTGCGGCGCTG GGCATATCAGCGCTGTTGCAGTGGTGGTGATAGTAGTTGTTGTGTGTGTG TGTGTGAGAGAGAGAGAGAGAGAGAGAGACAATGAAGTTGACGCTGCTGC TCTGAGCGCAATTGCGCTGTGACTCGTGTGATGGCTCATGAGTCACCATG CGGAGTGAGCTCTCGCAGAGCCGCGCTGATGCGTGCCCCGCCAGGGCGTT AAAGTAAGTGTGAGGCGCGCGTGCGTGGCGTATAGTATGGCTACTTATTG AGCACTAAACAGGCGAAGTCATTGGCTGATACAGCTGGGGGCAGACTCAA AGCAGCAATGGTTCAGAGTTGGCGCGCTAACAGCGGAGCAGCACATGACA GTGAGCAACCCTGTGTACACATGATGCAAAGTGCCATGCAGCTGAGCTAT GTGGACATCAAGTGTGTATGCACACATGAACATTGTGCATGGCGCACTGG AGTTGAGTGCGGATAATGCGCAGCGCATGACGCCCAGCGGTGTAACTTCG TACACGTCTGTACCATCACGCCCTCTGCACAATAACAAATTGAATAGACT GATTGGCGTCTGCAAAGGGACATGCCGCGGAGCGATATGGCATGATGCAC GTATGCATTGTCCTGTACCCTGCGCAGGAGCTGAGCGCGGAGCGCATGGC GCTGAGCAATGTGACTTCGTGCACGTCTGTACCACCGCATCCTCTGCTCA AATCAGTCAAACAGACTGCCGACGTTTGCAAAGTGACATGCTGCTGTGCG ATGTGACACAATGCACGTGTGCACTATCACGTGCGCTGCGCACAGGAGCT GCGCGCGGAGGACGTGTAGCGCATGGCGCTGAGTAATATGACAACGTACA CGTTTGTACCACCACGTGCTCTGTTCAATCAGTCAATTAGACTGACGCTT GCAAAGGGACAGCGATGTAACATGCTGCACATATGAACGCGTACCCACCC TGCGCAGGAGCTGAGCGCGGAGGACGTGCAGCGCATGGCGCTGGAGCGTC AGCGCCTGCGCGACGGCATGCTGGCGGCGGCGGAGCACAAGTCGGCGGCG CAGAAGCGCGGGTGGGAGGCGGAGATGCAGCTGAGCCGCCGCCTCGAGGC GCTGGAAAATGCGGTGCACACGTGCAACTCCAAGGCCCAGGCGCTGCAGC TGGTGCCTGCCGCTGCTAAGAACGCCAACGGGCAGGTACGATGCGCAGCC GCTTGTGTCGTTTGCAATGAAGCAAGCGCCAGATGCGTTGCAGGTGTGGT TGATAGGGTTGCTGGGGTCCGGTCTGCGTACGCTGTGCAGGGCGAGGAAG GCTCGGTGCAGTGACCCTTGTCGCGTTTTACTGGTCAGAGTGGCTGTTGT CTGTGCGCGCTGTCGAAGTCCGATCACTGCAAGCAACTCGAAGGCGCGAC GCAGGTGTTGTGAGTGGTGCGGATGACTCGCCCATAGTGCCGATTGGGCG AATGATGTGCTCGTCCCTATTGCAACTCACGTGCTCAACAATCATCCATG CGTGCTCTTTTCTTAGGGCTAGGTTTTGAGGGCCATTTGTAGGAATGTCA GGTCAAAAGGCTTATGGTAGACCCAGCGCTGGCATGGCATACAAGTCTGC CCAAGGCATATACATCCTTGCACAGTGGCTAGAGGCAGCTCAAATGCTAC GTGCGCTTGAAGCTGCTGGCTGCCATCCTCTACACGGTTGAGCGGCACTT TCTTCTGCAATGCTGCATGTATTGGCGCCCACTTCAACTTCAACCGCATC GCCCTGCTGTGGCAACTGCAGTCAGCCAGCCGCAAACGCGCGCACACAAC TGACCGACTCCCTCTCGCCCACCCGCCATGCACACAAACAGGACTACGAG CTGGGCATCAACAGGCACAGCCTGGAGGACGAGGAGAACGTGCTGAGCAA TGACGTGAGGGGGCACATCCGGCCCGCGCTGGCGGCGATGCGCGACGCGG TGGTGCGGCGCATGCAGGAGGCGCGCGAGCAGCTGCTGGAGCTGCTCGAC GCGCAGGAGGCCAGGTGAATGTTCACTGCCGCTTTATGGCAGTCACGAGT TTAGTTAGGAGCTGCCCTCCTTCTCCTCCAGTCAACGCGCCAGACAGCAT AGCCACAGTCACATTTCGTCCGGTACACTGCCGCGCCTGACTTGTCATGT ACAAGCGATGCGCGACGCAGTGGTAAGGCACACACGGGAGGCGAGGTGAG CGCTGCTGCTGATGAGCGCTGTGTCTGGGTGGTCCACTTCAAAGTTGAAG TGAAGAGTCATGGCACACCACTTCAAATTTAAAGTGAAGAGTGATGGCAC ACACTCGCCAGGTGAGCGCTGCCACGCGCCGCTGCTGAGCGCTGCCTGCA TAGGGTTTACTTCAAAGTTGAAGTTTATATGGCGCACACCCCGGGCATTG CTGAGTCATGAGGTTTGACCCCCCAAGTAGGTGTGACAGGTGATGACTTG TCAAATCCGAGTTGATTTGCACACATGCGCGGCGCGCAGTGCGTATGCGC GTCGGCTGTGACAGGCGTAAGTACAGCTGCTGGGCACACACGGTTCGCAG CACACTGGTGACTCATCTTCTTTGCGAGCTTGAACCTGGTGTCGCCATGA GCTGGTACACTGACTCCAGAAGACGCTATGCCACCTGTCGTCTTCCACTA CAAAAAGTACATTATGCACGGCACTGGCACATATTTCACAATGAATTAGT CTGTAAGACGCTGCTTCGAGTGCAACAGGGTCAAGCTGGTTGACATGCAA TAGGCTTTGTTGCGTAGTGTGAGCCTCCTGAGCAGCTGATGAAGCACTGA CAATGTCAACGAACGAACATCACGTATGCTACATGTACGACAACTAAAAT TGTACAAGACACGCCCAGGTGCTACTGTAGTGCTGCGGCAATGGCACGCC AGAGCGCTGTTGTTGAAGTGCTGAAACGGGCAAGGCCCAACGCAAGTTGC AGTACGATGGTGCACATTGCTCAGCACTGGCCAGCACTGGGCTGGCTGCA CGCAGCGGTGCATGGTCTGTTGCGTGAGGAGGCGAACAATCACACTGCAC GCTGCAAGCGCTGATGGGCCTTAAGAAGGAGCAGTCCCCGGGGTCAGCAA ACATTCAATTACAAGTGCGGTGTGCACCGTGCAATGTGCAGCAGGGGTCA TTGCATGACGTTGTGATGGCACCTGCACACCGCCATTAATTATCAGTATA GTATATACATACATCAGTGAGAGACAATTTGCAAGCCATGCAACACTCCT CCGCCCCCTACCCCACACCGCTCTCCATCCACCCCCCAACACCCCCGCTC CCGTCCCCCCCCCCCCCCCCCCTCGCGCAGCGAGGAGCAGCTGAGCGAGC AGGTGGACGCGCACGCGGCGCTCGAGTCGCGCGTCAAGCGCAGCGAGGAC GCGTACAGACGCGAGAAGGACGCGCTCGACGCCCACATGGCCGCCAAGGC CACGCAGGCCTCCGCGCTAGAGCGCCGCCTCTGCAGCGCGCGCGACCCGC AGGGCGCGGCGGCGCGCGCGACGGCGGCGCGCGCGCGCGCCGCGGCGCTG CGCGGCGAGATGCAGGCGGCGCGCGCGGCGGCGGCGGCGGCGTCCGCGGC CACGAAGCAGGAGATCCACGAGGCGCTGGTGGTGTGCTGGGACTTCCAGG ATGGGGCGAAGGGGGCGCTCGCGGAGCTGCGCGCGCAGGGGGAGGGCGCG CTGAGCGCTGTCGCGGGGTGCGGCGCCGTGGAACGGCTCTGGGAACTGTC TGCGGAACGGGCCGAGGAATGAATGCGGCGGGGGTGGCGCTGCATGATGG CATTTGTCTGGCTGGTAATTGCCAGTGCGTGATTGGGCGGCATACGTATG TCGTGCGTGGGCTGAGATGATCGCAGCGGCAGGTTTCGGGGCCCAGCACG CAGAGGCGTGGTGCAGGTGCTGCGCGCAGAGCCATGTACAGTCCTTTGCA AGATGTGTTGGCAAAGGTGCGGGGAATTTGGCCCAAGCGATCCATTCGAT GGGTAAGACAACAGGATCAATGGCGTGGTCCTCGTAGATGCGCCGAGGAG CTGTGCTCCGCCGCCACAATTTGTTTGTTGTGTGTAATGAACCAATAGCT TGGTGCA
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Coding sequence (CDS) from alignment at Contig_27:67107..72613+

>mRNA_6873 ID=mRNA_6873|Name=jgi.p|Trimin1|348554|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1872bp|location=Sequence derived from alignment at Contig_27:67107..72613+ (Tribonema minus UTEX_B_3156 )
ATGGCTGCCCCAGGCCGCATGAGCCTCAACGTAGGAAACGCGATGGGGAG
GGGGACTGCAGCGCCACCGCCACGCGCCAGCCTCGCAGCTGTAAGACACA
GCCTGGCAGCACCTGGGGGGCGGAAGAGCAGCGTGGGGATGAAGCGCAGC
AGCAATTTTGGGACTGCCGCCATCAAGACAGACCCTCGTCCGATCACAGA
CAAGAACTTTCGGAACGACAGTATTCGGGCACTAGTCAATTACCTGGCAG
ACTACGGATACGACCAGCCAATCTCTGCCAAAATACTGACTCGCCCCAGC
GGCCGCGATTTCAACAACATAATGGGCTTCCTCTTTCGCCAGTTCGACCC
AGCATGGCAGCCGAGCCCTGGGGCACGCTTTGAGGACGAGGTCATCCCAT
TCCTGAAGAGCATCCACTACCCCTTCACCCTCTCCAAGTCGTTGCTACAG
GCGGTGGGCGCTCCGCAGTCGTGGCCCAAAGCTCTGGCGGCGATCTCATG
GATAGTGGAGCTGCTGATGTACGACAAGGAGGTTGCGGCGTATGAGAGCG
AGCAGCAGGATCGCAGGCTTGCCGGTGAAGTTGACATAGCGGACCACGCG
TTCTTCGAGTACCTCGGCCAGGCCTACGCGTGCTTCCTCAACGGCGACGA
GACCAGCCTCACCGCGCTCGAGCAGGACCTCGTCGGCACCTTTGGCCACC
AGAACCAGCTTATTGGAGCGGAGGCGCAGACGCGGCAGGCGCGCAACGCG
GCGCTGCGCGAGGCCACGGAGAGGATCCTGAGCCGCGCGGGCGCGCTGCC
GGAGCTGCGCCAGCGTCAGCGCGACTGCGCGAGCGACCTGGAAAAGTTCC
GGCTCCTCATCGCTCAGCTGGACGGCCACAGGGACGCGCTAGTGGAGAAG
GTGGAGAAGCGCGCCGCGGAGGAGGAGCGCGCCAAGGGGGACCTGGGGGG
GGTGCGCGAGCAGATTGCGGCGCTGCGCGAGCGCGTGGCTAATCAGGAGC
TGAGCGCGGAGCGCATGGCGCTGAGCAATGAGCTGAGCGCGGAGGACGTG
CAGCGCATGGCGCTGGAGCGTCAGCGCCTGCGCGACGGCATGCTGGCGGC
GGCGGAGCACAAGTCGGCGGCGCAGAAGCGCGGGTGGGAGGCGGAGATGC
AGCTGAGCCGCCGCCTCGAGGCGCTGGAAAATGCGGTGCACACGTGCAAC
TCCAAGGCCCAGGCGCTGCAGCTGGTGCCTGCCGCTGCTAAGAACGCCAA
CGGGCAGGACTACGAGCTGGGCATCAACAGGCACAGCCTGGAGGACGAGG
AGAACGTGCTGAGCAATGACGTGAGGGGGCACATCCGGCCCGCGCTGGCG
GCGATGCGCGACGCGGTGGTGCGGCGCATGCAGGAGGCGCGCGAGCAGCT
GCTGGAGCTGCTCGACGCGCAGGAGGCCAGCGAGGAGCAGCTGAGCGAGC
AGGTGGACGCGCACGCGGCGCTCGAGTCGCGCGTCAAGCGCAGCGAGGAC
GCGTACAGACGCGAGAAGGACGCGCTCGACGCCCACATGGCCGCCAAGGC
CACGCAGGCCTCCGCGCTAGAGCGCCGCCTCTGCAGCGCGCGCGACCCGC
AGGGCGCGGCGGCGCGCGCGACGGCGGCGCGCGCGCGCGCCGCGGCGCTG
CGCGGCGAGATGCAGGCGGCGCGCGCGGCGGCGGCGGCGGCGTCCGCGGC
CACGAAGCAGGAGATCCACGAGGCGCTGGTGGTGTGCTGGGACTTCCAGG
ATGGGGCGAAGGGGGCGCTCGCGGAGCTGCGCGCGCAGGGGGAGGGCGCG
CTGAGCGCTGTCGCGGGGTGCGGCGCCGTGGAACGGCTCTGGGAACTGTC
TGCGGAACGGGCCGAGGAATGA
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