mRNA_685 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|156962 vs. uniprot
Match: A0A835Z3I5_9STRA (Poxvirus late transcription factor VLTF3 like-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3I5_9STRA) HSP 1 Score: 562 bits (1449), Expect = 9.310e-203 Identity = 275/275 (100.00%), Postives = 275/275 (100.00%), Query Frame = 1 Query: 1 MFPQVFAWAHAKCKKNPDAKFVKRMKIPSNVNCSLNNFIIVSAPKTTEEDLEDAVNQDDDAYCELCNTVKQFDARTAQAICLTCGLSSTYMVPDTSYREGVSIHSPYLYKRINHCRDHLHRITGRESTQIEPEVIERISSELAKTHRPEELCNVTQTDIRLLLKRLGLSRLYNHTTRIWALTTGGKPLVLTQTQEQELLHLFNLIQVPWEKLRPKNRKNFLSYSYLLHKLSLLLGYTDVASHFKLLKSKEKVHFQDLYWQKICAAMGFRFERSVY 825 MFPQVFAWAHAKCKKNPDAKFVKRMKIPSNVNCSLNNFIIVSAPKTTEEDLEDAVNQDDDAYCELCNTVKQFDARTAQAICLTCGLSSTYMVPDTSYREGVSIHSPYLYKRINHCRDHLHRITGRESTQIEPEVIERISSELAKTHRPEELCNVTQTDIRLLLKRLGLSRLYNHTTRIWALTTGGKPLVLTQTQEQELLHLFNLIQVPWEKLRPKNRKNFLSYSYLLHKLSLLLGYTDVASHFKLLKSKEKVHFQDLYWQKICAAMGFRFERSVY Sbjct: 1 MFPQVFAWAHAKCKKNPDAKFVKRMKIPSNVNCSLNNFIIVSAPKTTEEDLEDAVNQDDDAYCELCNTVKQFDARTAQAICLTCGLSSTYMVPDTSYREGVSIHSPYLYKRINHCRDHLHRITGRESTQIEPEVIERISSELAKTHRPEELCNVTQTDIRLLLKRLGLSRLYNHTTRIWALTTGGKPLVLTQTQEQELLHLFNLIQVPWEKLRPKNRKNFLSYSYLLHKLSLLLGYTDVASHFKLLKSKEKVHFQDLYWQKICAAMGFRFERSVY 275
BLAST of jgi.p|Trimin1|156962 vs. uniprot
Match: A0A835ZE58_9STRA (Poxvirus late transcription factor VLTF3 like-domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE58_9STRA) HSP 1 Score: 357 bits (916), Expect = 2.380e-121 Identity = 175/277 (63.18%), Postives = 217/277 (78.34%), Query Frame = 1 Query: 1 MFPQVFAWAHAKCKKN-PDAKFVKRMKIPSNVNCSLNNFIIVSAPKTT--EEDLEDAVNQDDDAYCELCNTVKQFDARTAQAICLTCGLSSTYMVPDTSYREGVSIHSPYLYKRINHCRDHLHRITGRESTQIEPEVIERISSELAKTHRPEELCNVTQTDIRLLLKRLGLSRLYNHTTRIWALTTGGKPLVLTQTQEQELLHLFNLIQVPWEKLRPKNRKNFLSYSYLLHKLSLLLGYTDVASHFKLLKSKEKVHFQDLYWQKICAAMGFRFERSV 822 +FP+V A A A KN PD +F+KRMK+ CS+ +F++V T E++++D +++DDD YCELCNTVK + R+AQ+ICLTCG ++ YMVPDTS+REGVSIH+PYLYKR NH RDHL R+ GRESTQIEP+V+E+IS ELAKT+ +ELC VT DIRL+LK+LGLSRLYNHTTRIW LTT +PL+LTQTQE ELLHLF LIQ PWE+LRP+ R N LSYSYL+HK++ +LGY DVA F LLKSKEK+ QD W+ IC +GFRFERS Sbjct: 14 IFPRVLARALAIHHKNEPDQRFLKRMKVGGRETCSITSFLVVKTDATLVDEDEVDDFIDKDDDQYCELCNTVKVLEPRSAQSICLTCGETNGYMVPDTSFREGVSIHTPYLYKRSNHFRDHLKRVQGRESTQIEPDVLEKISQELAKTYNHDELCKVTPKDIRLILKQLGLSRLYNHTTRIWCLTTDQEPLILTQTQEGELLHLFQLIQAPWERLRPEGRSNMLSYSYLIHKMANILGYPDVAERFSLLKSKEKMVVQDSLWKTICNELGFRFERSA 290
BLAST of jgi.p|Trimin1|156962 vs. uniprot
Match: A0A836CJC6_9STRA (Poxvirus late transcription factor VLTF3 like-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJC6_9STRA) HSP 1 Score: 334 bits (856), Expect = 8.420e-113 Identity = 163/252 (64.68%), Postives = 200/252 (79.37%), Query Frame = 1 Query: 73 MKIPSNVNCSLNNFIIVSAPKTT--EEDLEDAVNQDDDAYCELCNTVKQFDARTAQAICLTCGLSSTYMVPDTSYREGVSIHSPYLYKRINHCRDHLHRITGRESTQIEPEVIERISSELAKTHRPEELCNVTQTDIRLLLKRLGLSRLYNHTTRIWALTTGGKPLVLTQTQEQELLHLFNLIQVPWEKLRPKNRKNFLSYSYLLHKLSLLLGYTDVASHFKLLKSKEKVHFQDLYWQKICAAMGFRFERSV 822 MKI CS+ +F++V A TT E ++++ + +DDD YCELCN+VK + R+AQ+ICLTCG ++ YMVPDTS+REGVSIH+PYLYKR NH RDHL R+ GRESTQIE EV+E+IS ELAKT+ +EL VT DIRL+LK+LGLSRLYNHTTRIW LTT +PLVL+QTQE ELLHLFNLIQ PWE+LRP+ R N LSYSYL+HK++ LLGY VA+ F LLKSK+K+ QD W+ IC +GFRFERSV Sbjct: 1 MKIGGRETCSITSFLVVKACSTTVDENEIDEFIGEDDDQYCELCNSVKVLEPRSAQSICLTCGETNEYMVPDTSFREGVSIHTPYLYKRSNHFRDHLKRVQGRESTQIEAEVLEKISQELAKTYNHDELHKVTPKDIRLILKQLGLSRLYNHTTRIWCLTTDQEPLVLSQTQEGELLHLFNLIQAPWERLRPEGRSNMLSYSYLIHKMARLLGYPHVAARFSLLKSKDKMVVQDQLWKTICQELGFRFERSV 252
BLAST of jgi.p|Trimin1|156962 vs. uniprot
Match: A0A835Z4D5_9STRA (Poxvirus late transcription factor VLTF3 like-domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4D5_9STRA) HSP 1 Score: 238 bits (607), Expect = 1.790e-74 Identity = 131/267 (49.06%), Postives = 173/267 (64.79%), Query Frame = 1 Query: 49 PDAKFVKRMKI---PSNVNCSLNNFIIVSAP-----KTTEEDLEDAVNQDDDAYCELCNTVKQFDARTAQAICLTCGLSSTYMVPDTSYREGVSIHSPYLYKRINHCRDHLHRITGRESTQIEPEVIERISSELAK-THRPEELCNVTQTDIRLLLKRLGLSRLYNHTTRIWALTTGGKPLVLTQTQEQELLHLFNLIQVPWEKLRPKNRKNFLSYSYLLHKLSLLLGYTDVASHFKLLKSKEKVHFQDLYWQKICAAMGFRFERSV 822 P A+F KRMK+ P N+ F+ VSAP + ++ +D V D C+ CN + D R A A C CG S T+ V D S+REG S+H+PYLYKR NH RDHL R RE+T IE +V+E I +EL K + NV+Q ++R +LKRL LS LYNH+TRIW L TG +P LT+TQEQ L+ +F +IQ P+EK +PK R N LSYSY++ + + LLGY D+A FKLLKSKEKV +QD W+KIC +G+R+ RS+ Sbjct: 31 PSARFAKRMKLAARPPNIAA----FVSVSAPSKMLSREAQQRRDDFVP--DAHLCDPCNRPRVIDTRQATATCSRCGDSQTFNVIDRSFREGTSLHTPYLYKRSNHFRDHLKRFAARETTTIEDDVLEAIRTELRKRVYDDASFKNVSQDEVRDVLKRLSLSHLYNHSTRIWTLLTGHQPPELTETQEQNLVVMFAMIQAPFEKHKPKERSNMLSYSYVISQCAKLLGYHDIARAFKLLKSKEKVVYQDAIWRKICEELGWRYARSM 291
BLAST of jgi.p|Trimin1|156962 vs. uniprot
Match: A0A835Z4M5_9STRA (Poxvirus late transcription factor VLTF3 like-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4M5_9STRA) HSP 1 Score: 237 bits (605), Expect = 5.540e-74 Identity = 125/268 (46.64%), Postives = 172/268 (64.18%), Query Frame = 1 Query: 40 KKNPDAKFVKRMKIPSNVNCSLNNFIIVSAPKTTEEDLEDAVNQDDDAY-----CELCNTVKQFDARTAQAICLTCGLSSTYMVPDTSYREGVSIHSPYLYKRINHCRDHLHRITGRESTQIEPEVIERISSELAKT--HRPEELCNVTQTDIRLLLKRLGLSRLYNHTTRIWALTTGGKPLVLTQTQEQELLHLFNLIQVPWEKLRPKNRKNFLSYSYLLHKLSLLLGYTDVASHFKLLKSKEKVHFQDLYWQKICAAMGFRFERSV 822 K P +F KRM+I S+ +L+ F+ V+ + A+ + D CE CN K D R A A+C CG Y V DTSYREG S+H+PYLYKR NH +DHL R + REST+IE V+E I EL K +++ V +IR +LK L +S LYNHT RIW+L TG +P LT+TQE+EL+ +F+++Q PW + RP +RKN LSYSY++HKL+ +LGY D++ HFKLLKS++K+ FQD W+ +C +G+ F RSV Sbjct: 39 KIQPAPRFTKRMRIGSSPP-TLDGFVAVTKRERASHLSAAALARRKDYVADPHICEPCNCAKSIDLRQATALCPRCGECECYNVIDTSYREGTSLHTPYLYKRSNHFKDHLKRFSARESTEIEDGVLEAIRGELGKRIYGDSDDMTAVAPEEIRAILKSLNMSHLYNHTMRIWSLVTGRRPPTLTETQERELVTMFHMVQEPWLRNRPPSRKNMLSYSYIIHKLAQMLGYDDISRHFKLLKSRDKIAFQDDMWKLVCKDLGWPFVRSV 305
BLAST of jgi.p|Trimin1|156962 vs. uniprot
Match: A0A836CC98_9STRA (Poxvirus late transcription factor VLTF3 like-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC98_9STRA) HSP 1 Score: 218 bits (556), Expect = 7.840e-67 Identity = 119/268 (44.40%), Postives = 168/268 (62.69%), Query Frame = 1 Query: 49 PDAKFVKRMKIPSNVNCSLNNFIIVSAP---------KTTEEDLEDAVNQDDDAYCELCNTVKQFDARTAQAICLTCGLSSTYMVPDTSYREGVSIHSPYLYKRINHCRDHLHRITGRESTQIEPEVIERISSELAK-THRPEELCNVTQTDIRLLLKRLGLSRLYNHTTRIWALTTGGKPLVLTQTQEQELLHLFNLIQVPWEKLRPKNRKNFLSYSYLLHKLSLLLGYTDVASHFKLLKSKEKVHFQDLYWQKICAAMGFRFERSV 822 P A+F KRM++ S+ F+ VS P + EE + D N CE CN + D R A A+C CG S Y V D S+REG S+H+ YLY DHL R + RE+T IE +V+E I +EL K + +V+Q ++R++LKRL LS LYNH+TRIW L TG +P L++TQE +L+ +F ++Q +E+ +PK R+N LSYSY+L + +LLLGY ++A+ FKLLKSKEK+ FQD W+ ICA +G+R+ RS+ Sbjct: 31 PSARFAKRMRLVDMPVTSITAFVNVSTPAKALSAAALQRREEHVPDPHN------CEGCNRSRVIDTRQATAVCARCGESDMYNVIDASFREGTSLHTAYLY-----IEDHLKRFSARETTLIEDDVLESIRTELRKRVYDDASFKDVSQDEVRIILKRLSLSALYNHSTRIWTLITGNQPPSLSETQENDLVTMFAMLQTSFERNKPKERRNMLSYSYVLKQCALLLGYDEIAAAFKLLKSKEKIQFQDQVWKLICADLGWRYIRSM 287
BLAST of jgi.p|Trimin1|156962 vs. uniprot
Match: D8LPD2_ECTSI (NCLDV-specific basal transcription factor A2L n=2 Tax=root TaxID=1 RepID=D8LPD2_ECTSI) HSP 1 Score: 168 bits (425), Expect = 8.360e-47 Identity = 100/284 (35.21%), Postives = 162/284 (57.04%), Query Frame = 1 Query: 46 NPDAKFVKRMKIP-SNVNCSLNNFIIVSAPKTTEE---DLEDAVNQDD------DA------------YCELCNTVKQFDARTAQAICLTCGLSSTY--MVPDTSYREGVSIHSPYLYKRINHCRDHLHRITGRESTQIEPEVIERISSELAKTHRPEELCNVTQTDIRLLLKRLGLSRLYNHTTRIWALTTGGKPLVLTQTQEQELLHLFNLIQVPWEKL-RPKNRKNFLSYSYLLHKLSLLLGYTDVASHFKLLKSKEKVHFQDLYWQKICAAMGFRFERSV 822 N DAKF+K+M V C++++F+ +SA +TT + E V Q D DA CE+CN + + A+ +C CGLS Y M + R+G H+ Y+YKR NH + L R G+E+T ++ V++ + EL K R +++ ++ T +R +LK+L L++ YN+ +I A+ TG P +T QE LL +F+ IQ P++K+ R + R+N LSYS+L+HK L+ + + +F LL+S +K+ +QD W+K+CA +GF + RS Sbjct: 37 NQDAKFLKKMNASFPGVVCTIDSFVDISAYRTTHHSNGEAERVVTQSDVQDADMDAEVATGNGLSKAWICEVCNKELVYIRKDAERVCPDCGLSHPYQEMTREDCIRQGYVSHTTYMYKRQNHFKTWLKRTQGKETTTVDKGVVDSVRFELKK-QRIDDIRTISHTKVREILKKLRLNKHYNNCVQITAIITGVTPPQMTNEQETALLQMFDAIQEPFQKIIRSEPRQNMLSYSFLIHKFLELMSWDEYLPYFPLLRSVDKIQYQDWIWRKLCAEVGFEYIRST 319
BLAST of jgi.p|Trimin1|156962 vs. uniprot
Match: A0A6C0KEP1_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0KEP1_9ZZZZ) HSP 1 Score: 161 bits (408), Expect = 9.050e-44 Identity = 91/226 (40.27%), Postives = 135/226 (59.73%), Query Frame = 1 Query: 151 LEDAVNQDDDAYCELCNTVKQFDARTAQAICLTCGLSSTYM--VPDTSYREGVSIHSPYLYKRINHCRDHLHRITGRESTQIEPEVIERISSELAKTHRPEELCNVTQTDIRLLLKRLGLSRLYNHTTRIWALTTGGKPLVLTQTQEQELLHLFNLIQVPWEKLRPKNRKNFLSYSYLLHKLSLLLGYTDVASHFKLLKSKEKVHFQDLYWQKICAAMGFRFERSV 822 +E VN D CE+CN D R A+AIC CGL+ +Y + Y + V I SP+ YKRINH R++L ++ +++T I E+ + + EL K R E ++T +R LK+LG + Y H T I TG KP L++ E+++L +F+ IQ P+E+ P +RKNFLSYSY +HKL L+L +++ HF LLKS++K QD W++IC + + F SV Sbjct: 148 IEAGVNFD---TCEVCNIPTFVDTRLAEAICPNCGLAKSYQDSIGTPEYLDTVQILSPFAYKRINHLREYLTQLQAKQTTHIPTELRDALIKELRK-ERIESAEDITTARVRRYLKKLGKHKYYEHITIIICQLTGKKPPRLSKDLEEKILQMFSEIQQPFERHCPSDRKNFLSYSYTIHKLCLILDKSELCVHFPLLKSRDKNFCQDQIWKRICQDLNWPFHASV 369
BLAST of jgi.p|Trimin1|156962 vs. uniprot
Match: A0A6C0KDP1_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0KDP1_9ZZZZ) HSP 1 Score: 142 bits (358), Expect = 1.950e-36 Identity = 83/229 (36.24%), Postives = 125/229 (54.59%), Query Frame = 1 Query: 166 NQDDDA-----YCELCNTVKQFDARTAQAICLTCGLSSTYMVPDTS--YREGVSIHSPYLYKRINHCRDHLHRITGRESTQIEPEVIERISSELAKTHRPEELCNV---TQTDIRLLLKRLGLSRLYNHTTRIWALTTGGKPLVLTQTQEQELLHLFNLIQVPWEKLRPKNRKNFLSYSYLLHKLSLLLGYTDVASHFKLLKSKEKVHFQDLYWQKICAAMGFRFERSV 822 NQ DD C CN ++ + ++ C+ CG Y + + +R+ V I SP+ YKR+ H +++L +I +E+T I ++I I E+ K E + NV T +R LK+L L++ Y+H I TG L L+ E + +F IQ P+E+ P RKNFLSYSY LHK+ L++G + +F LLKS+EK + QD W+KIC +G+ F SV Sbjct: 144 NQGDDPRDSLMVCRDCNVELVYNQKDSELACIECGKCQFYQNHEVTGEFRDDVHILSPFAYKRMTHLKEYLSQIQAKETTDIPEDIISTIQKEIRK----ERITNVNLITPRRVRGYLKKLHLNKFYDHVNSIIVRITGTSALKLSGELECTFIEMFQQIQSPFERHCPPERKNFLSYSYTLHKMCLIIGQERLCEYFPLLKSREKNYAQDCIWRKICEELGWPFHPSV 368
BLAST of jgi.p|Trimin1|156962 vs. uniprot
Match: A0A3G5A6Z1_9VIRU (Late transcription factor VLTF3-like protein n=1 Tax=Homavirus sp. TaxID=2487769 RepID=A0A3G5A6Z1_9VIRU) HSP 1 Score: 142 bits (358), Expect = 1.480e-35 Identity = 81/214 (37.85%), Postives = 122/214 (57.01%), Query Frame = 1 Query: 187 CELCNTVKQFDARTAQAICLTCGLSSTYMVPDT--SYREGVSIHSPYLYKRINHCRDHLHRITGRESTQIEPEVIERISSELAKTHRPEELCNVTQTDIRLLLKRLGLSRLYNHTTRIWALTTGGKPLVLTQTQEQELLHLFNLIQVPWEKLRPKNRKNFLSYSYLLHKLSLLLGYTDVASHFKLLKSKEKVHFQDLYWQKICAAMGFRFERSV 822 CE CN K + +C CG+S ++ +Y++ V Y YKRINH + L + +EST+I E+ + I +EL K + +L +T ++ +LK+LG+++ Y HTT I + +G P + + E+EL +F +IQ+P+EK PK R NFLSYSY+LHK LL D F LLKS+EK+ QD WQ IC + ++F S+ Sbjct: 276 CEECNMDKTLNQAEGSYVCQNCGISEMIIIESEIPNYKDVVPDKPGYPYKRINHFNEWLSQFQAKESTEIPKEIYDLILTELHK-QKFYDLKRLTLPQMKKILKKLGITQQYEHTTHIISKLSGLPPPTINRETEEELRKMFKMIQLPFEKHCPKARINFLSYSYVLHKFCQLLELDDFIKCFPLLKSREKLRQQDKIWQAICRELKWQFIPSI 488 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|156962 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_685 ID=mRNA_685|Name=jgi.p|Trimin1|156962|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=828bp|location=Sequence derived from alignment at Contig_2:1132963..1133790+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGTTCCCTCAGGTGTTTGCGTGGGCGCACGCCAAATGCAAGAAGAACCCback to top protein sequence of jgi.p|Trimin1|156962 >Trimin1|156962|e_gw1.2.299.1 ID=Trimin1|156962|e_gw1.2.299.1|Name=jgi.p|Trimin1|156962|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=276bp MFPQVFAWAHAKCKKNPDAKFVKRMKIPSNVNCSLNNFIIVSAPKTTEEDback to top mRNA from alignment at Contig_2:1132963..1133790+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_685 ID=mRNA_685|Name=jgi.p|Trimin1|156962|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=828bp|location=Sequence derived from alignment at Contig_2:1132963..1133790+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_2:1132963..1133790+ >mRNA_685 ID=mRNA_685|Name=jgi.p|Trimin1|156962|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=828bp|location=Sequence derived from alignment at Contig_2:1132963..1133790+ (Tribonema minus UTEX_B_3156 )back to top |