mRNA_6839 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|350318 vs. uniprot
Match: A0A835YPW5_9STRA (GOLD domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPW5_9STRA) HSP 1 Score: 478 bits (1230), Expect = 1.350e-168 Identity = 268/268 (100.00%), Postives = 268/268 (100.00%), Query Frame = 1
Query: 178 MRLALWLTLVSGLACKALCMEPLTVVLEPDEKACFYEIVTPEDEGDRTVEVFVLRGNRLSVGLTVRGPFKQQQAGHPATSMKAALETSEVVAEQDEMEHDPSMFGQTHKQGFNAAAGVYEICLDNSGPGVLGSPGRKLVQLQVRADARITADAAAAARXXXXXXXXXXXXXXKGAPAATDDLGALATQLLRLRAELDAVDAKQARERRRLAVHSASEQRASAGMMLGSALETLVFIGAGVFQVAFIARWFRGRAGGGAGSARGTHQWA 981
MRLALWLTLVSGLACKALCMEPLTVVLEPDEKACFYEIVTPEDEGDRTVEVFVLRGNRLSVGLTVRGPFKQQQAGHPATSMKAALETSEVVAEQDEMEHDPSMFGQTHKQGFNAAAGVYEICLDNSGPGVLGSPGRKLVQLQVRADARITADAAAAARXXXXXXXXXXXXXXKGAPAATDDLGALATQLLRLRAELDAVDAKQARERRRLAVHSASEQRASAGMMLGSALETLVFIGAGVFQVAFIARWFRGRAGGGAGSARGTHQWA
Sbjct: 1 MRLALWLTLVSGLACKALCMEPLTVVLEPDEKACFYEIVTPEDEGDRTVEVFVLRGNRLSVGLTVRGPFKQQQAGHPATSMKAALETSEVVAEQDEMEHDPSMFGQTHKQGFNAAAGVYEICLDNSGPGVLGSPGRKLVQLQVRADARITADAAAAARXXXXXXXXXXXXXXKGAPAATDDLGALATQLLRLRAELDAVDAKQARERRRLAVHSASEQRASAGMMLGSALETLVFIGAGVFQVAFIARWFRGRAGGGAGSARGTHQWA 268
BLAST of jgi.p|Trimin1|350318 vs. uniprot
Match: A0A7S2FQ25_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FQ25_9STRA) HSP 1 Score: 95.5 bits (236), Expect = 3.930e-19 Identity = 69/235 (29.36%), Postives = 113/235 (48.09%), Query Frame = 1
Query: 241 PLTVVLEPDEKACFYEIVTPEDEGDRTVEVFVLRGNRLSVGLTVRGPFKQQQAGHPATSMKAALETSEVVAEQDEMEHDPSMFGQTHKQGFNAAAGVYEICLDNSGPGVLGSPGRKLVQLQVRADARITAD--AAAAARXXXXXXXXXXXXXXKGAPAATDDLGALATQLLRLRAELDAVDAKQARERRRLAVHSASEQRASAGMMLGSALETLVFIGAGVFQVAFIARWFRGRA 939
PL + LEP C +E + P+D D TVE+FV G +L V +T+ GP P A+ +V++ E + D S F + G Y +C+ N + K+VQ+ +R+ A++ ++ ++ KG+ A ++ L + RL+ L V +Q +ER R AVH+A Q ++ M+LGS +ET+VF+ FQ+ F+ WF G+A
Sbjct: 48 PLGLDLEPLATRCVHEFI-PQD-ADGTVELFVESGGKLEVHMTIEGPMATGWDKIPEAGESTAMLFDKVISNGREEDFDDSFLFS-----FKSDGGAYRVCVSND----MNRVANKVVQVDIRSSAKVISENPIKISSDPKKAEEARLAKEEAKGSEARQAEVAVLEKSIRRLKRGLRKVQQQQQQERHRQAVHTAVNQDSNNHMVLGSLVETVVFVATAAFQIIFVRNWFDGKA 271
BLAST of jgi.p|Trimin1|350318 vs. uniprot
Match: A0A7S2SPS2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SPS2_9STRA) HSP 1 Score: 93.2 bits (230), Expect = 2.200e-18 Identity = 73/245 (29.80%), Postives = 110/245 (44.90%), Query Frame = 1
Query: 208 SGLACKALCMEPLTVVLEPDEKACFYEIVTPEDEGDRTVEVFVLRGNRLSVGLTVRGPFKQQQA-GHPATSMKAALETSEVVAEQDEMEHDPSMFGQTHKQGFNAAAGVYEICLDNSGPGVLGSPGRKLVQLQVRADARITADAAAAARXXXXXXXXXXXXXXKGAPAATD-DLGALATQLLRLRAELDAVDAKQARERRRLAVHSASEQRASAGMMLGSALETLVFIGAGVFQVAFIARWFRGR 936
+GL + PL V L P K C +E + EG TVE+FV G RL V LTV GP + G P + EVV E + F ++ F + GVY C+ N V+ K+VQ+ +R+ + K A D D+ L + R++ L ++ +Q ++R R AVH+A + + M++GS +ET+VFIGA FQ+ F+ WF +
Sbjct: 23 AGLGAASAATMPLAVSLPPRSKRCVHEDFPAKSEG--TVELFVESGGRLEVHLTVEGPMGSTDSQGVPQPGTETGTILDEVVTNGHGQEEE---FDDSYLFSFKSDGGVYRACVANDMNHVV----TKVVQIDIRSSFASPTPVGEPIKLLSSGAREDLSEEEKKAKKRQDADVATLQESIRRIKGGLKTIERQQKQDRHRQAVHTAVNEDNNNHMVIGSLIETVVFIGAAAFQIIFVRNWFENK 258
BLAST of jgi.p|Trimin1|350318 vs. uniprot
Match: A0A7S2C741_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C741_9STRA) HSP 1 Score: 89.4 bits (220), Expect = 4.960e-17 Identity = 67/232 (28.88%), Postives = 107/232 (46.12%), Query Frame = 1
Query: 241 PLTVVLEPDEKACFYEIVTPEDEGDRTVEVFVLRGNRLSVGLTVRGPFKQQQAGHPATSMKAALETSEVVAEQDEMEHDPSMFGQTHKQGFNAAAGVYEICLDNSGPGVLGSPGRKLVQLQVRADARITADAAAAARXXXXXXXXXXXXXXKGAPAATDDLGALATQLLRLRAELDAVDAKQARERRRLAVHSASEQRASAGMMLGSALETLVFIGAGVFQVAFIARWFRGR 936
PL + L P + C E + +G T+E+FV G +LSV + V+GP + G P S K ++V E + D S F F + G Y +C+ N + K+VQ+ +R D K +++ AL ++ RL+ L V +Q ++R R AVH+A Q ++ M++GS +ETL+F+G FQV F+ +WF G+
Sbjct: 36 PLGISLPPMTERCIIEDIPESHQG--TLEIFVESGGKLSVHVVVQGPLIPGKNGIPEPSPKTITLLDDIVTNGREEDFDDSFFFS-----FPSRGGSYRVCIAND----MNRIATKMVQVDLRKSVASQNDKI----EDKDAIESSGSKDGKATSKEPEEVLALEKRIKRLKKSLHKVQRQQEQDRHRQAVHTAVNQDSNNHMVVGSLIETLIFMGTASFQVIFVRKWFAGK 252
BLAST of jgi.p|Trimin1|350318 vs. uniprot
Match: A0A4D9D7I6_9STRA (GOLD domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D7I6_9STRA) HSP 1 Score: 85.5 bits (210), Expect = 1.570e-15 Identity = 79/265 (29.81%), Postives = 113/265 (42.64%), Query Frame = 1
Query: 241 PLTVVLEPDEKACFYEIVTPEDEGDRTVEVFVLRGNRLSVGLTVRGPFKQQQAGHPATSMKAALETSEVVAEQDEMEHDPSMF-GQTHKQGFN-----------AAAGVYEICLDNSGPGVLGSPGRKLVQLQVRADAR------ITADAAAAARXXXXXXXXXXXXXXKGAPAATDDLGALATQLLRLRAELDAVDAKQARERRRLAVHSASEQRASAGMMLGSALETLVFIGAGVFQVAFIARWFRGRAGGGAGSARGTHQWA 981
PL++ + P +K C Y+ + G EVFV+ G L +G++V GPF G P+ K ET V D + S F Q H G A G Y +CLDN+ + K+++ A DAA AA K + A DL L R+ L V KQ +ER RLA+ +A+ Q+ M++ S ET+VFIG +FQ+ ++ RWF GR G + +WA
Sbjct: 29 PLSLEVPPRDKVCLYQYYDVGETGK--AEVFVVNGGNLDIGVSVEGPFTDDVHGTPS---KTTQETKTVY---DAIVASSSAFLNQVHPAGVTVSPDGVEISWPAQPGAYALCLDNT----MSHVQTKVIEFSFPASKEGAGTDDFDLDAALAAANEGSGTNDTISENIKQSYKA--DLALLKRSAQRIGRTLTDVQHKQVKERHRLALQTAANQKNHQKMVVSSVFETVVFIGVSLFQLFWVRRWFEGR-----GLRARSREWA 274
BLAST of jgi.p|Trimin1|350318 vs. uniprot
Match: A0A7S2WSX9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WSX9_9STRA) HSP 1 Score: 54.7 bits (130), Expect = 1.320e-5 Identity = 39/138 (28.26%), Postives = 65/138 (47.10%), Query Frame = 1
Query: 526 GVYEICLDNSGPGVLGSPGRKLVQLQVRADARITADAAAAARXXXXXXXXXXXXXXKGAPAATD-DLGALATQLLRLRAELDAVDAKQARERRRLAVHSASEQRASAGMMLGSALETLVFIGAGVFQVAFIARWFRGR 936
GVY C+ N V+ K+VQ+ +R+ + K A D D+ L + R++ L ++ +Q ++R R AVH+A + + M++GS +ET+VFIGA FQ+ F+ WF +
Sbjct: 5 GVYRACVANDMNHVV----TKVVQIDIRSSFASPTPVGEPIKLLSSGAREDLSEEEKKAKKRQDADVATLQESIRRIKGGLKTIERQQKQDRHRQAVHTAVNEDNNNHMVIGSLIETVVFIGAAAFQIIFVRNWFENK 138 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|350318 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_6839 ID=mRNA_6839|Name=jgi.p|Trimin1|350318|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=984bp|location=Sequence derived from alignment at Contig_60:653900..655512+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GTTCGTGCTGCATCCCTTGGGGCAGCGCTCTATGCCACCGCAAGTACCTGback to top protein sequence of jgi.p|Trimin1|350318 >Trimin1|350318|estExt_Genemark1.C_Ctg_600095 ID=Trimin1|350318|estExt_Genemark1.C_Ctg_600095|Name=jgi.p|Trimin1|350318|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=269bp MRLALWLTLVSGLACKALCMEPLTVVLEPDEKACFYEIVTPEDEGDRTVEback to top mRNA from alignment at Contig_60:653900..655512+ Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_6839 ID=mRNA_6839|Name=jgi.p|Trimin1|350318|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1613bp|location=Sequence derived from alignment at Contig_60:653900..655512+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_60:653900..655512+ >mRNA_6839 ID=mRNA_6839|Name=jgi.p|Trimin1|350318|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=807bp|location=Sequence derived from alignment at Contig_60:653900..655512+ (Tribonema minus UTEX_B_3156 )back to top |