mRNA_6826 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|168804
Unique NamemRNA_6826
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|168804 vs. uniprot
Match: A0A835YND2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YND2_9STRA)

HSP 1 Score: 362 bits (928), Expect = 3.150e-126
Identity = 188/188 (100.00%), Postives = 188/188 (100.00%), Query Frame = 1 
Query:    1 MQLRAVIGLSLAYGVSAFAPPPAAHIASTAKHTAFAQKHALKHGRCSGRGAAGLAPLHALDPSTVELAAQSVQGVSAWSVTTVTADLGAQLFQASLAPYLAFLYFLSKPETKTPKGGTFSFTFLLVFVAATIPAGILAKVQYNEILANVDYLHGVAESFLTITNLLIVKAFRDAVIKSDGRCVCSDTM 564
            MQLRAVIGLSLAYGVSAFAPPPAAHIASTAKHTAFAQKHALKHGRCSGRGAAGLAPLHALDPSTVELAAQSVQGVSAWSVTTVTADLGAQLFQASLAPYLAFLYFLSKPETKTPKGGTFSFTFLLVFVAATIPAGILAKVQYNEILANVDYLHGVAESFLTITNLLIVKAFRDAVIKSDGRCVCSDTM
Sbjct:    1 MQLRAVIGLSLAYGVSAFAPPPAAHIASTAKHTAFAQKHALKHGRCSGRGAAGLAPLHALDPSTVELAAQSVQGVSAWSVTTVTADLGAQLFQASLAPYLAFLYFLSKPETKTPKGGTFSFTFLLVFVAATIPAGILAKVQYNEILANVDYLHGVAESFLTITNLLIVKAFRDAVIKSDGRCVCSDTM 188
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BLAST of jgi.p|Trimin1|168804 vs. uniprot
Match: D8LER3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LER3_ECTSI)

HSP 1 Score: 159 bits (401), Expect = 9.110e-47
Identity = 78/102 (76.47%), Postives = 89/102 (87.25%), Query Frame = 1 
Query:  223 VSAWSVTTVTADLGAQLFQASLAPYLAFLYFLSKPETKTPKGGTFSFTFLLVFVAATIPAGILAKVQYNEILANVDYLHGVAESFLTITNLLIVKAFRDAVI 528
            VSAWSVT++T+D  A+LFQASL PYLAFL+ LS+ ETKTP+GGTF F FLLVFV ATIPAGI AK +YNEILANVDYLHG+AESFLT+TNL IV AFR AV+
Sbjct:   26 VSAWSVTSITSDFAAELFQASLFPYLAFLWLLSRKETKTPEGGTFGFAFLLVFVVATIPAGIYAKTEYNEILANVDYLHGIAESFLTLTNLFIVSAFRKAVV 127
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BLAST of jgi.p|Trimin1|168804 vs. uniprot
Match: A0A6H5KGT7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGT7_9PHAE)

HSP 1 Score: 162 bits (409), Expect = 2.870e-44
Identity = 86/133 (64.66%), Postives = 98/133 (73.68%), Query Frame = 1 
Query:  157 GLAPLHALDPSTVELAAQSVQG---------VSAWSVTTVTADLGAQLFQASLAPYLAFLYFLSKPETKTPKGGTFSFTFLLVFVAATIPAGILAKVQYNEILANVDYLHGVAESFLTITNLLIVKAFRDAVI 528
            G   LH LDP T   A  +            VSAWSVT++T+D  A+LFQASL PYLAFL+ LS+ ETKTP+GGTF F FLLVFV ATIPAGI AK +YNEILANVDYLHG+AESFLT+TNL IV AFR AV+
Sbjct:  103 GSLKLHMLDPGTAVGALSTAVAAGGGGADGAVSAWSVTSITSDFAAELFQASLLPYLAFLWLLSRKETKTPEGGTFGFAFLLVFVVATIPAGIYAKTEYNEILANVDYLHGIAESFLTLTNLFIVSAFRKAVV 235
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BLAST of jgi.p|Trimin1|168804 vs. uniprot
Match: A0A0G4G427_VITBC (Uncharacterized protein n=3 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4G427_VITBC)

HSP 1 Score: 129 bits (325), Expect = 1.670e-32
Identity = 69/107 (64.49%), Postives = 79/107 (73.83%), Query Frame = 1 
Query:  208 QSVQGVSAWSVTTVTADLGAQLFQASLAPYLAFLYFLSKPETKTPKGGTFSFTFLLVFVAATIPAGILAKVQYNEILANVDYLHGVAESFLTITNLLIVKAFRDAVI 528
            Q    V+ WSV+    D+  QLF ASL PYLAFL+FLS+PET+ P+   F F FLLVFV  TIPAGILAKV YNE LANVDYLHG AESFLT+TNLLIV   R A++
Sbjct:    5 QEYLNVNPWSVSAE--DIAGQLFAASLFPYLAFLWFLSRPETRMPRLANFGFQFLLVFVGMTIPAGILAKVWYNEKLANVDYLHGGAESFLTVTNLLIVIGMRQAIV 109
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BLAST of jgi.p|Trimin1|168804 vs. uniprot
Match: A0A1X6NWM6_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NWM6_PORUM)

HSP 1 Score: 125 bits (313), Expect = 1.200e-31
Identity = 68/104 (65.38%), Postives = 75/104 (72.12%), Query Frame = 1 
Query:  232 WSVTTVTAD-LGAQLFQASLAPYLAFLYFLSKPETKTPKGGTFSFTFLLVFVAATIPAGILAKVQYNEILANVDYLHGVAESFLTITNLLIVKAFRDAVIKSDG 540
            WS++   AD L AQLF ASL PYLAFLYFLS+PET  PKG    F FLLVFV ATIPAGI AKV   +ILANVD+LHG AES LT+TNLLIV  FR  +    G
Sbjct:  117 WSISAAAADALAAQLFAASLFPYLAFLYFLSRPETGCPKGAYRGFAFLLVFVFATIPAGIYAKVVVGDILANVDWLHGSAESLLTVTNLLIVGGFRAGLASPTG 220
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BLAST of jgi.p|Trimin1|168804 vs. uniprot
Match: A0A7S0W6D8_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0W6D8_9CRYP)

HSP 1 Score: 119 bits (298), Expect = 1.250e-30
Identity = 63/121 (52.07%), Postives = 77/121 (63.64%), Query Frame = 1 
Query:  178 LDPSTVELAAQSVQGVSAWSVTTVTADLGAQLFQASLAPYLAFLYFLSKPETKTPKGGTFSFTFLLVFVAATIPAGILAKVQYNEILANVDYLHGVAESFLTITNLLIVKAFRDAVIKSDG 540
            LDP  + +AA + +  S++  T    D+   LF  SL PYL FLY L K ET TP  G F F FLLVFV A+IPA I AK  Y +ILANVD+LHG +E FLT+TN+ IV  FR AV   +G
Sbjct:    3 LDPGNIAIAAGAAEAASSYLSTLTVEDVAGGLFAFSLFPYLGFLYHLDKEETNTPSLGNFGFRFLLVFVFASIPAAIAAKALYGDILANVDWLHGSSEFFLTLTNIFIVLGFRRAVASREG 123
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BLAST of jgi.p|Trimin1|168804 vs. uniprot
Match: A0A0G4H1D7_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4H1D7_9ALVE)

HSP 1 Score: 121 bits (304), Expect = 7.810e-29
Identity = 68/101 (67.33%), Postives = 74/101 (73.27%), Query Frame = 1 
Query:  223 VSAWSVTTVTADLGAQLFQASLAPYLAFLYFLSKPETKTPKGGTFSFTFLLVFVAATIPAGILAKVQYNEILANVDYLHGVAESFLTITNLLIVKAFRDAV 525
            +  WSV + T  L  QLF ASL PYLAFLYFL + ETKTPK   F F FLLVFV ATIPAGI AKV Y E LANVD+LHG +ES LTITNLLIV  FR A+
Sbjct:   74 IDPWSVNSET--LATQLFAASLPPYLAFLYFLGREETKTPKLPLFGFWFLLVFVFATIPAGIYAKVAYGEKLANVDWLHGSSESLLTITNLLIVVGFRRAL 172
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BLAST of jgi.p|Trimin1|168804 vs. uniprot
Match: R7Q950_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q950_CHOCR)

HSP 1 Score: 119 bits (299), Expect = 7.850e-29
Identity = 65/102 (63.73%), Postives = 73/102 (71.57%), Query Frame = 1 
Query:  223 VSAWSVTTVTAD-LGAQLFQASLAPYLAFLYFLSKPETKTPKGGTFSFTFLLVFVAATIPAGILAKVQYNEILANVDYLHGVAESFLTITNLLIVKAFRDAV 525
            V  WSV+    D L AQ F ASL PYL FLY+L + E K PK   F F FLLVFV ATIPAGI AKV Y++ILAN+D+LHG AES LTITNLLIV  FR A+
Sbjct:   43 VDPWSVSPEAVDALAAQFFAASLFPYLGFLYYLGRDEVKCPKLANFGFRFLLVFVFATIPAGIYAKVHYHDILANIDWLHGGAESLLTITNLLIVLGFRGAM 144
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BLAST of jgi.p|Trimin1|168804 vs. uniprot
Match: A0A7S4FPV4_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4FPV4_9EUGL)

HSP 1 Score: 118 bits (295), Expect = 7.730e-28
Identity = 65/107 (60.75%), Postives = 75/107 (70.09%), Query Frame = 1 
Query:  205 AQSVQGVSAWSVTTVTADLGAQLFQASLAPYLAFLYFLSKPETKTPKGGTFSFTFLLVFVAATIPAGILAKVQYNEILANVDYLHGVAESFLTITNLLIVKAFRDAV 525
            A++V+  + WSV     D+   LFQASL PYLAFL+FL +P TK P G    F FLLVFV ATIPAGI AK QY +ILANVD+LHG AES LTITNL IV   R A+
Sbjct:  116 AEAVELANPWSVQVN--DIAPTLFQASLVPYLAFLFFLGRPSTKLPAGAWRGFAFLLVFVFATIPAGIYAKTQYGDILANVDWLHGGAESLLTITNLWIVFGLRSAM 220
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BLAST of jgi.p|Trimin1|168804 vs. uniprot
Match: A0A2V3IH42_9FLOR (Ycf49-like protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IH42_9FLOR)

HSP 1 Score: 114 bits (286), Expect = 2.310e-27
Identity = 63/101 (62.38%), Postives = 71/101 (70.30%), Query Frame = 1 
Query:  223 VSAWSVTTVTAD-LGAQLFQASLAPYLAFLYFLSKPETKTPKGGTFSFTFLLVFVAATIPAGILAKVQYNEILANVDYLHGVAESFLTITNLLIVKAFRDA 522
            V  WSV+  + D L AQ F ASL PYLAFLY L++ +   P    F F FLLVFV ATIPAGI AK  Y++ILANVD+LHG AES LTITNLLIV  FR A
Sbjct:    3 VDPWSVSAESIDALAAQFFAASLFPYLAFLYLLNRKQVNCPPLANFGFRFLLVFVFATIPAGIYAKTHYHDILANVDWLHGSAESLLTITNLLIVLGFRQA 103
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|168804 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YND2_9STRA3.150e-126100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LER3_ECTSI9.110e-4776.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KGT7_9PHAE2.870e-4464.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A0G4G427_VITBC1.670e-3264.49Uncharacterized protein n=3 Tax=Vitrella brassicaf... [more]
A0A1X6NWM6_PORUM1.200e-3165.38Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A7S0W6D8_9CRYP1.250e-3052.07Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A0G4H1D7_9ALVE7.810e-2967.33Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
R7Q950_CHOCR7.850e-2963.73Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A7S4FPV4_9EUGL7.730e-2860.75Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A2V3IH42_9FLOR2.310e-2762.38Ycf49-like protein n=1 Tax=Gracilariopsis chorda T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_60contigContig_60:594571..595241 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|168804|e_gw1.60.39.1
GOsGO:0003674,GO:0003824,GO:0004103,GO:0004305,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006629,GO:0006644,GO:0006646,GO:0006650,GO:0006656,GO:0006657,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019637,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044424,GO:0044444,GO:0044464,GO:0045017,GO:0046337,GO:0046470,GO:0046474,GO:0046486,GO:0071704,GO:0090407,GO:0097164,GO:1901564,GO:1901566,GO:1901576
Descriptionpositive regulation of TORC1 signaling
COG categoryU
Max annot lvl2759|Eukaryota
EggNOG OGsKOG2445@1|root,KOG2445@2759|Eukaryota
Evalue1.49e-47
Seed ortholog2880.D8LER3
Hectar predicted targeting categorychloroplast
TranscriptId169126
TrackFilteredModels1
ProteinId168804
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|168804gene_6826Tribonema minus UTEX_B_3156 geneContig_60 594571..595241 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6826_1exon_6826_1Tribonema minus UTEX_B_3156 exonContig_60 594571..594982 +
exon_6826_2exon_6826_2Tribonema minus UTEX_B_3156 exonContig_60 595087..595241 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6826CDS_6826Tribonema minus UTEX_B_3156 CDSContig_60 594571..594982 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|168804Trimin1|168804|e_gw1.60.39.1Tribonema minus UTEX_B_3156 polypeptideContig_60 594571..595241 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6826 ID=mRNA_6826|Name=jgi.p|Trimin1|168804|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=567bp|location=Sequence derived from alignment at Contig_60:594571..595241+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCTGCGAGCTGTCATTGGTCTGAGCCTTGCTTACGGGGTCTCAGC
TTTTGCGCCTCCCCCTGCTGCTCACATTGCAAGCACAGCCAAGCATACTG
CGTTTGCACAGAAACATGCACTAAAGCATGGCCGATGCAGCGGCCGCGGA
GCCGCTGGCCTGGCTCCATTACATGCACTAGACCCATCTACAGTAGAGCT
GGCGGCACAGAGCGTGCAGGGCGTGTCGGCATGGAGTGTCACTACGGTGA
CTGCGGATCTGGGCGCTCAGCTGTTCCAGGCATCTCTGGCGCCTTACTTG
GCCTTCTTGTATTTCCTGTCGAAACCAGAGACCAAGACACCAAAGGGAGG
GACTTTCAGCTTTACTTTCCTGCTGGTGTTCGTGGCTGCCACCATACCTG
CTGGGATCCTCGCGAAGGTTCAATACAATGAAATCCTGGCAAATGTGGAC
TACCTGCATGGCGTGGCGGAGTCGTTCCTGACCATCACCAACCTTCTGAT
AGTGAAAGCCTTCAGGGATGCGGTGATCAAGAGTGATGGCAGGTGCGTGT
GCAGTGACACCATGTGA
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protein sequence of jgi.p|Trimin1|168804

>Trimin1|168804|e_gw1.60.39.1 ID=Trimin1|168804|e_gw1.60.39.1|Name=jgi.p|Trimin1|168804|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=189bp
MQLRAVIGLSLAYGVSAFAPPPAAHIASTAKHTAFAQKHALKHGRCSGRG
AAGLAPLHALDPSTVELAAQSVQGVSAWSVTTVTADLGAQLFQASLAPYL
AFLYFLSKPETKTPKGGTFSFTFLLVFVAATIPAGILAKVQYNEILANVD
YLHGVAESFLTITNLLIVKAFRDAVIKSDGRCVCSDTM*
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mRNA from alignment at Contig_60:594571..595241+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6826 ID=mRNA_6826|Name=jgi.p|Trimin1|168804|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=671bp|location=Sequence derived from alignment at Contig_60:594571..595241+ (Tribonema minus UTEX_B_3156 )
ATGCAGCTGCGAGCTGTCATTGGTCTGAGCCTTGCTTACGGGGTCTCAGC
TTTTGCGCCTCCCCCTGCTGCTCACATTGCAAGCACAGCCAAGCATACTG
CGTTTGCACAGAAACATGCACTAAAGCATGGCCGATGCAGCGGCCGCGGA
GCCGCTGGCCTGGCTCCATTACATGCACTAGACCCATCTACAGTAGAGCT
GGCGGCACAGAGCGTGCAGGGCGTGTCGGCATGGAGTGTCACTACGGTGA
CTGCGGATCTGGGCGCTCAGCTGTTCCAGGCATCTCTGGCGCCTTACTTG
GCCTTCTTGTATTTCCTGTCGAAACCAGAGACCAAGACACCAAAGGGAGG
GACTTTCAGCTTTACTTTCCTGCTGGTGTTCGTGGCTGCCACCATACCTG
CTGGGATCCTCGGTGAGGCACGCGTACACGGTGTCGATCTGGACCCCGAA
TGTTCTGATCAGCCAGCCAGTGCGATGTCACAGGTATGACTGTTCCGCTG
CCCTGCCGCTCTGCAGCGAAGGTTCAATACAATGAAATCCTGGCAAATGT
GGACTACCTGCATGGCGTGGCGGAGTCGTTCCTGACCATCACCAACCTTC
TGATAGTGAAAGCCTTCAGGGATGCGGTGATCAAGAGTGATGGCAGGTGC
GTGTGCAGTGACACCATGTGA
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Coding sequence (CDS) from alignment at Contig_60:594571..595241+

>mRNA_6826 ID=mRNA_6826|Name=jgi.p|Trimin1|168804|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=567bp|location=Sequence derived from alignment at Contig_60:594571..595241+ (Tribonema minus UTEX_B_3156 )
ATGCAGCTGCGAGCTGTCATTGGTCTGAGCCTTGCTTACGGGGTCTCAGC
TTTTGCGCCTCCCCCTGCTGCTCACATTGCAAGCACAGCCAAGCATACTG
CGTTTGCACAGAAACATGCACTAAAGCATGGCCGATGCAGCGGCCGCGGA
GCCGCTGGCCTGGCTCCATTACATGCACTAGACCCATCTACAGTAGAGCT
GGCGGCACAGAGCGTGCAGGGCGTGTCGGCATGGAGTGTCACTACGGTGA
CTGCGGATCTGGGCGCTCAGCTGTTCCAGGCATCTCTGGCGCCTTACTTG
GCCTTCTTGTATTTCCTGTCGAAACCAGAGACCAAGACACCAAAGGGAGG
GACTTTCAGCTTTACTTTCCTGCTGGTGTTCGTGGCTGCCACCATACCTG
CTGGGATCCTCGCGAAGGTTCAATACAATGAAATCCTGGCAAATGTGGAC
TACCTGCATGGCGTGGCGGAGTCGTTCCTGACCATCACCAACCTTCTGAT
AGTGAAAGCCTTCAGGGATGCGGTGATCAAGAGTGATGGCAGGTGCGTGT
GCAGTGACACCATGTGA
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