mRNA_6819 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|168703
Unique NamemRNA_6819
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|168703 vs. uniprot
Match: A0A836CB01_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB01_9STRA)

HSP 1 Score: 483 bits (1243), Expect = 6.860e-172
Identity = 259/259 (100.00%), Postives = 259/259 (100.00%), Query Frame = 1 
Query:    1 MEKLVIFGSTGAVGRLCVLHAVQDPRVEKVVAVVRSAPKPPAFFTAGAADPAAAAALLGAKLQQVRADFGDDASLRGACDGATAGLSCVGVYTAAVKDTADFLAREHAPNVAAARAAAAAGSVTRWGYLSGQGVAPPPPSRAAPGLLQPMFAFVKGSVERDVAAMGAFTRGVTFARPGMILGRGDALPGLVGASERFFNGAAGSWIARTRFAVQADDIARALVQSVLAGTGAAARGEGRGAEVLENEDIKRRAGELGQV 777
            MEKLVIFGSTGAVGRLCVLHAVQDPRVEKVVAVVRSAPKPPAFFTAGAADPAAAAALLGAKLQQVRADFGDDASLRGACDGATAGLSCVGVYTAAVKDTADFLAREHAPNVAAARAAAAAGSVTRWGYLSGQGVAPPPPSRAAPGLLQPMFAFVKGSVERDVAAMGAFTRGVTFARPGMILGRGDALPGLVGASERFFNGAAGSWIARTRFAVQADDIARALVQSVLAGTGAAARGEGRGAEVLENEDIKRRAGELGQV
Sbjct:    1 MEKLVIFGSTGAVGRLCVLHAVQDPRVEKVVAVVRSAPKPPAFFTAGAADPAAAAALLGAKLQQVRADFGDDASLRGACDGATAGLSCVGVYTAAVKDTADFLAREHAPNVAAARAAAAAGSVTRWGYLSGQGVAPPPPSRAAPGLLQPMFAFVKGSVERDVAAMGAFTRGVTFARPGMILGRGDALPGLVGASERFFNGAAGSWIARTRFAVQADDIARALVQSVLAGTGAAARGEGRGAEVLENEDIKRRAGELGQV 259
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BLAST of jgi.p|Trimin1|168703 vs. uniprot
Match: K3W6B1_GLOUD (NAD(P)-bd_dom domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W6B1_GLOUD)

HSP 1 Score: 168 bits (426), Expect = 6.140e-48
Identity = 114/256 (44.53%), Postives = 154/256 (60.16%), Query Frame = 1 
Query:    4 EKLVIFGSTGAVGRLCVLHAVQDPRVEKVVAVVRSAP-KPPAFFTAGAADPAAAAALLGAKLQQVRADFGDDASLRGACDGATAGLSCVGVYTAAVKDTADFLAREHAPNVAAARAAAAAGSVTRWGYLSGQGVAPPPPSRAAPGLLQPMFAFVKGSVERDVAAMGAFTRGVTFARPGMILGRGDALPGLVGASERFFNGAAGSWIARTRFAVQADDIARALVQSVLAGTGAAARGEGRGAEVLENEDIKRRAGEL 768
             K+++ G++G+VGR  V  A++   VE V A++RS P K  AFF     +P+    +   KL+Q   D+     +  A  G TAG+SC+GVYTA VK+  DF+ +E+ PN+A ARAAAA G+  RWGYLSG GV  P  S+  PG  +P+FAF KGS+ERD++A+  F    T ARP MIL R +  PG +   E +FN     W + TRFAV+ DDIA+ALV S++              E+LENEDIKR A E 
Sbjct:    5 HKVIVTGASGSVGRRVVHFALKHKSVESVTALLRSGPEKNAAFFGLDPKNPSDKE-VFDNKLKQKIVDYNAPEDVVEATKGHTAGISCLGVYTADVKNVDDFMDQEYKPNLAVARAAAATGT-KRWGYLSGNGVKQPERSQTKPGFFEPIFAFTKGSIERDLSAVEGF-EATTSARPAMILHRENHYPGTMKYVEDWFNN--WKWFSTTRFAVETDDIAKALVHSIVKEQDLKLN------EILENEDIKRVAREF 249
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BLAST of jgi.p|Trimin1|168703 vs. uniprot
Match: A0A3M1CIF9_9DELT (Epimerase n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A3M1CIF9_9DELT)

HSP 1 Score: 58.2 bits (139), Expect = 1.570e-6
Identity = 57/164 (34.76%), Postives = 79/164 (48.17%), Query Frame = 1 
Query:    7 KLVIFGSTGAVGRLCVLHAVQDPRVEKVVAVVRSAPKPPAFFTAGAADPAAAAALLGAKLQQVRADFGDDASLRGACDGATAGLSCVGVYTAAVKDTADFLAREHAPNVAAARAAAAAGSVTRWGYLSGQGVAPPPPSRAAPGLLQPMFAFVKGSVERDVAAMG 498
            KLVIFG+TG VG   ++ A+ DPRVE+V+AV R     P        D      +L      +  DF D  ++    +G  A L C+GV    + + AD+ A  H   +AAAR         R+ Y+SG+G       R   G    M+A VKG VE ++ AMG
Sbjct:    2 KLVIFGATGMVGEGALIEALDDPRVERVLAVTRR----PLSRQHDKLD------IL------IHDDFRDYRAVADRLEGFDACLYCLGVSAFGMSE-ADYAAITHDFTIAAARVLWERNPDLRFIYVSGEGT-----DRTEQGAA--MWARVKGRVENELLAMG 141
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|168703 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A836CB01_9STRA6.860e-172100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
K3W6B1_GLOUD6.140e-4844.53NAD(P)-bd_dom domain-containing protein n=1 Tax=Gl... [more]
A0A3M1CIF9_9DELT1.570e-634.76Epimerase n=1 Tax=Deltaproteobacteria bacterium Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_60contigContig_60:563758..564537 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|168703|e_gw1.60.108.1
BRITEko00000,ko01000,ko04147
KEGG koko:K17290
DescriptionSemialdehyde dehydrogenase, NAD binding domain
COG categoryT
Max annot lvl3041|Chlorophyta
EggNOG OGsCOG0702@1|root,KOG4039@2759|Eukaryota,37XA9@33090|Viridiplantae,34KS0@3041|Chlorophyta
Evalue4.99e-06
Seed ortholog554065.XP_005847951.1
Hectar predicted targeting categoryother localisation
TranscriptId169025
TrackFilteredModels1
ProteinId168703
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|168703gene_6819Tribonema minus UTEX_B_3156 geneContig_60 563758..564537 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6819_1exon_6819_1Tribonema minus UTEX_B_3156 exonContig_60 563758..564537 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6819CDS_6819Tribonema minus UTEX_B_3156 CDSContig_60 563758..564537 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|168703Trimin1|168703|e_gw1.60.108.1Tribonema minus UTEX_B_3156 polypeptideContig_60 563758..564537 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6819 ID=mRNA_6819|Name=jgi.p|Trimin1|168703|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=780bp|location=Sequence derived from alignment at Contig_60:563758..564537- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAAAGCTGGTGATCTTCGGCTCCACCGGCGCCGTCGGCCGCCTCTG
CGTCCTGCACGCCGTCCAAGACCCGCGCGTCGAGAAGGTCGTCGCCGTCG
TGCGCTCCGCGCCCAAGCCGCCGGCCTTCTTCACCGCCGGCGCCGCCGAT
CCCGCCGCCGCCGCCGCGCTCCTCGGCGCCAAGCTGCAGCAGGTGCGCGC
CGACTTCGGCGACGACGCCTCGCTGCGCGGCGCGTGCGACGGCGCGACGG
CGGGCCTCTCGTGCGTCGGCGTCTACACGGCCGCCGTCAAGGACACGGCA
GACTTCCTGGCGCGCGAGCATGCGCCCAACGTCGCCGCCGCGCGCGCCGC
CGCCGCCGCGGGCTCCGTCACGCGCTGGGGCTACCTGAGCGGCCAGGGCG
TCGCGCCGCCGCCGCCGTCGCGCGCGGCGCCGGGCCTGCTCCAGCCCATG
TTCGCCTTCGTCAAGGGGTCAGTGGAGCGCGACGTGGCGGCGATGGGCGC
CTTTACGCGCGGCGTCACGTTCGCGCGCCCCGGCATGATCCTGGGGCGCG
GCGACGCGCTGCCGGGGCTCGTCGGCGCGAGCGAGCGCTTCTTCAACGGC
GCCGCGGGGTCGTGGATCGCGCGCACGCGCTTCGCGGTGCAGGCGGACGA
CATTGCGCGCGCGCTCGTGCAGTCGGTGCTGGCGGGCACGGGCGCCGCGG
CGAGGGGCGAGGGGCGCGGCGCGGAGGTGCTGGAGAACGAGGACATCAAG
CGGCGCGCCGGGGAGCTGGGGCAGGTATAG
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protein sequence of jgi.p|Trimin1|168703

>Trimin1|168703|e_gw1.60.108.1 ID=Trimin1|168703|e_gw1.60.108.1|Name=jgi.p|Trimin1|168703|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=260bp
MEKLVIFGSTGAVGRLCVLHAVQDPRVEKVVAVVRSAPKPPAFFTAGAAD
PAAAAALLGAKLQQVRADFGDDASLRGACDGATAGLSCVGVYTAAVKDTA
DFLAREHAPNVAAARAAAAAGSVTRWGYLSGQGVAPPPPSRAAPGLLQPM
FAFVKGSVERDVAAMGAFTRGVTFARPGMILGRGDALPGLVGASERFFNG
AAGSWIARTRFAVQADDIARALVQSVLAGTGAAARGEGRGAEVLENEDIK
RRAGELGQV*
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mRNA from alignment at Contig_60:563758..564537-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6819 ID=mRNA_6819|Name=jgi.p|Trimin1|168703|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=780bp|location=Sequence derived from alignment at Contig_60:563758..564537- (Tribonema minus UTEX_B_3156 )
ATGGAAAAGCTGGTGATCTTCGGCTCCACCGGCGCCGTCGGCCGCCTCTG
CGTCCTGCACGCCGTCCAAGACCCGCGCGTCGAGAAGGTCGTCGCCGTCG
TGCGCTCCGCGCCCAAGCCGCCGGCCTTCTTCACCGCCGGCGCCGCCGAT
CCCGCCGCCGCCGCCGCGCTCCTCGGCGCCAAGCTGCAGCAGGTGCGCGC
CGACTTCGGCGACGACGCCTCGCTGCGCGGCGCGTGCGACGGCGCGACGG
CGGGCCTCTCGTGCGTCGGCGTCTACACGGCCGCCGTCAAGGACACGGCA
GACTTCCTGGCGCGCGAGCATGCGCCCAACGTCGCCGCCGCGCGCGCCGC
CGCCGCCGCGGGCTCCGTCACGCGCTGGGGCTACCTGAGCGGCCAGGGCG
TCGCGCCGCCGCCGCCGTCGCGCGCGGCGCCGGGCCTGCTCCAGCCCATG
TTCGCCTTCGTCAAGGGGTCAGTGGAGCGCGACGTGGCGGCGATGGGCGC
CTTTACGCGCGGCGTCACGTTCGCGCGCCCCGGCATGATCCTGGGGCGCG
GCGACGCGCTGCCGGGGCTCGTCGGCGCGAGCGAGCGCTTCTTCAACGGC
GCCGCGGGGTCGTGGATCGCGCGCACGCGCTTCGCGGTGCAGGCGGACGA
CATTGCGCGCGCGCTCGTGCAGTCGGTGCTGGCGGGCACGGGCGCCGCGG
CGAGGGGCGAGGGGCGCGGCGCGGAGGTGCTGGAGAACGAGGACATCAAG
CGGCGCGCCGGGGAGCTGGGGCAGGTATAG
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Coding sequence (CDS) from alignment at Contig_60:563758..564537-

>mRNA_6819 ID=mRNA_6819|Name=jgi.p|Trimin1|168703|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=780bp|location=Sequence derived from alignment at Contig_60:563758..564537- (Tribonema minus UTEX_B_3156 )
ATGGAAAAGCTGGTGATCTTCGGCTCCACCGGCGCCGTCGGCCGCCTCTG
CGTCCTGCACGCCGTCCAAGACCCGCGCGTCGAGAAGGTCGTCGCCGTCG
TGCGCTCCGCGCCCAAGCCGCCGGCCTTCTTCACCGCCGGCGCCGCCGAT
CCCGCCGCCGCCGCCGCGCTCCTCGGCGCCAAGCTGCAGCAGGTGCGCGC
CGACTTCGGCGACGACGCCTCGCTGCGCGGCGCGTGCGACGGCGCGACGG
CGGGCCTCTCGTGCGTCGGCGTCTACACGGCCGCCGTCAAGGACACGGCA
GACTTCCTGGCGCGCGAGCATGCGCCCAACGTCGCCGCCGCGCGCGCCGC
CGCCGCCGCGGGCTCCGTCACGCGCTGGGGCTACCTGAGCGGCCAGGGCG
TCGCGCCGCCGCCGCCGTCGCGCGCGGCGCCGGGCCTGCTCCAGCCCATG
TTCGCCTTCGTCAAGGGGTCAGTGGAGCGCGACGTGGCGGCGATGGGCGC
CTTTACGCGCGGCGTCACGTTCGCGCGCCCCGGCATGATCCTGGGGCGCG
GCGACGCGCTGCCGGGGCTCGTCGGCGCGAGCGAGCGCTTCTTCAACGGC
GCCGCGGGGTCGTGGATCGCGCGCACGCGCTTCGCGGTGCAGGCGGACGA
CATTGCGCGCGCGCTCGTGCAGTCGGTGCTGGCGGGCACGGGCGCCGCGG
CGAGGGGCGAGGGGCGCGGCGCGGAGGTGCTGGAGAACGAGGACATCAAG
CGGCGCGCCGGGGAGCTGGGGCAGGTATAG
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