mRNA_6812 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|141136
Unique NamemRNA_6812
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|141136 vs. uniprot
Match: A0A835YN08_9STRA (RWP-RK domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN08_9STRA)

HSP 1 Score: 203 bits (517), Expect = 3.610e-66
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 1
Query:    1 KEPTLELLQSRFNTPLVDVAREFRVSLTMMKRLCRKLGIQRWPHRQIRSLDKLLFELEERISATTSARELSYLQEQVALLEKKRRLVTRGASSGLQSALRNALFMADP 324
            KEPTLELLQSRFNTPLVDVAREFRVSLTMMKRLCRKLGIQRWPHRQIRSLDKLLFELEERISATTSARELSYLQEQVALLEKKRRLVTRGASSGLQSALRNALFMADP
Sbjct:    1 KEPTLELLQSRFNTPLVDVAREFRVSLTMMKRLCRKLGIQRWPHRQIRSLDKLLFELEERISATTSARELSYLQEQVALLEKKRRLVTRGASSGLQSALRNALFMADP 108          
BLAST of jgi.p|Trimin1|141136 vs. uniprot
Match: A0A835Z1M5_9STRA (Putative NIN-like transcription factor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1M5_9STRA)

HSP 1 Score: 135 bits (339), Expect = 4.300e-36
Identity = 70/105 (66.67%), Postives = 87/105 (82.86%), Query Frame = 1
Query:   10 TLELLQSRFNTPLVDVAREFRVSLTMMKRLCRKLGIQRWPHRQIRSLDKLLFELEERISATTSARELSYLQEQVALLEKKRRLVTRGASSGLQSALRNALFMADP 324
            TLELLQS +N PL ++A+E  +SLT++K++CRK GIQRWPHRQIRS++K   EL ERI+  TS  E + LQ Q+ LLEKK+RLVTRGASSGLQSALRNALF+A+P
Sbjct:   15 TLELLQSFYNVPLAELAKELGLSLTLLKKICRKYGIQRWPHRQIRSINKSAQELTERINGATSHEERAELQSQLHLLEKKKRLVTRGASSGLQSALRNALFLANP 119          
BLAST of jgi.p|Trimin1|141136 vs. uniprot
Match: A0A835YTG3_9STRA (Putative NIN-like transcription factor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTG3_9STRA)

HSP 1 Score: 132 bits (331), Expect = 5.200e-35
Identity = 67/105 (63.81%), Postives = 86/105 (81.90%), Query Frame = 1
Query:   10 TLELLQSRFNTPLVDVAREFRVSLTMMKRLCRKLGIQRWPHRQIRSLDKLLFELEERISATTSARELSYLQEQVALLEKKRRLVTRGASSGLQSALRNALFMADP 324
            TLELLQS +N PL ++A+E  +SLT++K++CRK GIQRWPHRQIRSL+K   EL+ER     +A E + ++ Q+ LLEKK+RLVTRGASSGLQSALRNALF+A+P
Sbjct:   12 TLELLQSYYNVPLAELAKELGLSLTLLKKICRKFGIQRWPHRQIRSLNKTAQELKERAQCALTAEEHAEIEAQLQLLEKKKRLVTRGASSGLQSALRNALFLANP 116          
BLAST of jgi.p|Trimin1|141136 vs. uniprot
Match: H6WBB7_VAULI (Putative NIN-like transcription factor n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WBB7_VAULI)

HSP 1 Score: 130 bits (326), Expect = 2.400e-34
Identity = 64/108 (59.26%), Postives = 89/108 (82.41%), Query Frame = 1
Query:    1 KEPTLELLQSRFNTPLVDVAREFRVSLTMMKRLCRKLGIQRWPHRQIRSLDKLLFELEERISATTSARELSYLQEQVALLEKKRRLVTRGASSGLQSALRNALFMADP 324
            +E TLELLQS +N PL ++A+E  +SLT++K++CRK GIQRWPHRQIRS++K + +L ERI++  S  E + L+ Q+ LLEKKRRLVT+GASSGL +A+RNA+F+A+P
Sbjct:   12 EEITLELLQSYYNVPLAELAKELGLSLTLLKKICRKFGIQRWPHRQIRSINKNIQDLNERINSVNSPDEHAELRNQIGLLEKKRRLVTKGASSGLHTAMRNAIFLANP 119          
BLAST of jgi.p|Trimin1|141136 vs. uniprot
Match: A0A836CMG7_9STRA (RWP-RK domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMG7_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 5.860e-21
Identity = 50/105 (47.62%), Postives = 75/105 (71.43%), Query Frame = 1
Query:   10 TLELLQSRFNTPLVDVAREFRVSLTMMKRLCRKLGIQRWPHRQIRSLDKLLFELEERISATTSARELSYLQEQVALLEKKRRLVTRGASSGLQSALRNALFMADP 324
            TL +L++ +  PL   AR   VS TM+K+LCR+ GIQRWPHRQIRS++K + +  +  +  TSA +++   E++ALL+KKR +V + AS GL ++LR+A+FMA P
Sbjct:  101 TLSVLEACYGEPLTAAARRLGVSNTMLKKLCRRYGIQRWPHRQIRSIEKEVQKHMQARAQATSAVDIAACDERIALLQKKRAIVVKTASCGLNASLRSAIFMARP 205          
BLAST of jgi.p|Trimin1|141136 vs. uniprot
Match: A0A6H5JS66_9PHAE (RWP-RK domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS66_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 7.330e-20
Identity = 48/104 (46.15%), Postives = 74/104 (71.15%), Query Frame = 1
Query:   10 TLELLQSRFNTPLVDVAREFRVSLTMMKRLCRKLGIQRWPHRQIRSLDKLLFELEERISATTSARELSYLQEQVALLEKKRRLVTRGASSGLQSALRNALFMAD 321
            T+E+LQ  F+ PLV VA E  VSLTM+KRLCRKLG+ RWP RQI S++K + +L +++    +  + +   + +   EKK++L+TRGA++G+   +RNAL++AD
Sbjct:   32 TIEVLQQHFHQPLVVVADELGVSLTMIKRLCRKLGMPRWPFRQIDSINKAMEDLHDQLEGARTEADRARYCKALEDAEKKKQLITRGAAAGVDPNVRNALYLAD 135          
BLAST of jgi.p|Trimin1|141136 vs. uniprot
Match: D8LTZ5_ECTSI (Putative NIN-like transcription factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTZ5_ECTSI)

HSP 1 Score: 92.4 bits (228), Expect = 1.350e-19
Identity = 47/104 (45.19%), Postives = 74/104 (71.15%), Query Frame = 1
Query:   10 TLELLQSRFNTPLVDVAREFRVSLTMMKRLCRKLGIQRWPHRQIRSLDKLLFELEERISATTSARELSYLQEQVALLEKKRRLVTRGASSGLQSALRNALFMAD 321
            T+E+LQ  F+ PL+ VA E  VSLTM+KRLCRKLG+ RWP RQI S++K + +L +++    +  + +   + +   EKK++L+TRGA++G+   +RNAL++AD
Sbjct:   32 TIEVLQQHFHQPLMAVADELGVSLTMIKRLCRKLGMPRWPFRQIDSINKAMEDLHDQLEGARTEADRARYCKALEDAEKKKQLITRGAAAGVDPNVRNALYLAD 135          
BLAST of jgi.p|Trimin1|141136 vs. uniprot
Match: A0A7S3UTA5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UTA5_HETAK)

HSP 1 Score: 83.6 bits (205), Expect = 1.390e-16
Identity = 42/104 (40.38%), Postives = 71/104 (68.27%), Query Frame = 1
Query:   13 LELLQSRFNTPLVDVAREFRVSLTMMKRLCRKLGIQRWPHRQIRSLDKLLFELE-ERISATTSARELSYLQEQVALLEKKRRLVTRGASSGLQSALRNALFMAD 321
            ++LL+++F+ PL + A    +S+T +K++CRK  I+RWPHRQ+RSL+  + ELE ++     +  +++ L  ++ LLEKKR +V + AS GL+   RNA+F A+
Sbjct:   31 IDLLENKFDLPLSEAASSLGLSMTKLKKICRKFNIKRWPHRQVRSLENEIEELEMKKRRPNVTCAKIAKLNRRIELLEKKRLIVVKAASFGLEPKERNAIFCAN 134          
BLAST of jgi.p|Trimin1|141136 vs. uniprot
Match: A0A425CIF9_9STRA (RWP-RK domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A425CIF9_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 2.620e-16
Identity = 41/87 (47.13%), Postives = 62/87 (71.26%), Query Frame = 1
Query:    1 KEPTLELLQSRFNTPLVDVAREFRVSLTMMKRLCRKLGIQRWPHRQIRSLDKLLFELEERISATTSARELSYLQEQVALLEKKRRLV 261
            +E TLE L+  F+ P+V+VAREF +  T +K++CR+ GI+RWPHRQIRSL++ +  LE+  SATT+  E +  + Q+  L+ K+R V
Sbjct:   86 RELTLEKLRPHFDRPIVEVAREFGICTTFLKKICRRCGIKRWPHRQIRSLNRTIQMLEQVESATTNPEEKARYKTQIEELKDKQRAV 172          
BLAST of jgi.p|Trimin1|141136 vs. uniprot
Match: M4BJE9_HYAAE (RWP-RK domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BJE9_HYAAE)

HSP 1 Score: 80.1 bits (196), Expect = 1.410e-15
Identity = 43/87 (49.43%), Postives = 60/87 (68.97%), Query Frame = 1
Query:    1 KEPTLELLQSRFNTPLVDVAREFRVSLTMMKRLCRKLGIQRWPHRQIRSLDKLLFELEERISATTSARELSYLQEQVALLEKKRRLV 261
            +E TLE L+  F  P+V+VAREF +  T +K+LCR+ GI+RWPHRQIRSL++ +  LE+  SATTS  E +    Q+  L+ K+R V
Sbjct:   83 RELTLEELRPHFGQPIVEVAREFGICTTFLKKLCRQCGIKRWPHRQIRSLNRTIQMLEQVESATTSPEEKATYAAQIKELKDKQRAV 169          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|141136 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YN08_9STRA3.610e-66100.00RWP-RK domain-containing protein (Fragment) n=1 Ta... [more]
A0A835Z1M5_9STRA4.300e-3666.67Putative NIN-like transcription factor n=1 Tax=Tri... [more]
A0A835YTG3_9STRA5.200e-3563.81Putative NIN-like transcription factor n=1 Tax=Tri... [more]
H6WBB7_VAULI2.400e-3459.26Putative NIN-like transcription factor n=1 Tax=Vau... [more]
A0A836CMG7_9STRA5.860e-2147.62RWP-RK domain-containing protein n=1 Tax=Tribonema... [more]
A0A6H5JS66_9PHAE7.330e-2046.15RWP-RK domain-containing protein n=1 Tax=Ectocarpu... [more]
D8LTZ5_ECTSI1.350e-1945.19Putative NIN-like transcription factor n=1 Tax=Ect... [more]
A0A7S3UTA5_HETAK1.390e-1640.38Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A425CIF9_9STRA2.620e-1647.13RWP-RK domain-containing protein n=1 Tax=Peronospo... [more]
M4BJE9_HYAAE1.410e-1549.43RWP-RK domain-containing protein n=1 Tax=Hyalopero... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_60contigContig_60:474261..474584 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|141136|gw1.60.119.1
DescriptionRWP-RK domain
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGs2E5A6@1|root,2SC46@2759|Eukaryota
Evalue2.22e-20
Seed ortholog2880.D8LTZ5
Hectar predicted targeting categoryother localisation
TranscriptId141458
TrackFilteredModels1
ProteinId141136
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|141136gene_6812Tribonema minus UTEX_B_3156 geneContig_60 474261..474584 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6812_1exon_6812_1Tribonema minus UTEX_B_3156 exonContig_60 474261..474584 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6812CDS_6812Tribonema minus UTEX_B_3156 CDSContig_60 474261..474584 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|141136Trimin1|141136|gw1.60.119.1Tribonema minus UTEX_B_3156 polypeptideContig_60 474261..474584 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6812 ID=mRNA_6812|Name=jgi.p|Trimin1|141136|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=324bp|location=Sequence derived from alignment at Contig_60:474261..474584+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AAGGAGCCCACGCTGGAGCTGCTGCAGTCACGCTTCAATACCCCTTTGGT
GGACGTCGCCAGGGAGTTCAGAGTGTCGCTGACCATGATGAAGCGCCTCT
GCAGGAAGCTTGGCATCCAGCGCTGGCCCCATAGGCAGATCCGGTCCCTG
GACAAGCTCCTGTTCGAACTCGAGGAGAGGATCTCAGCAACCACCTCAGC
CAGGGAGCTGTCCTACTTGCAAGAGCAGGTGGCACTGCTGGAGAAAAAGC
GGCGGTTAGTGACTAGAGGCGCCTCCAGCGGCCTGCAGAGCGCCTTGCGG
AATGCCCTATTCATGGCAGACCCT
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protein sequence of jgi.p|Trimin1|141136

>Trimin1|141136|gw1.60.119.1 ID=Trimin1|141136|gw1.60.119.1|Name=jgi.p|Trimin1|141136|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=108bp
KEPTLELLQSRFNTPLVDVAREFRVSLTMMKRLCRKLGIQRWPHRQIRSL
DKLLFELEERISATTSARELSYLQEQVALLEKKRRLVTRGASSGLQSALR
NALFMADP
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mRNA from alignment at Contig_60:474261..474584+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6812 ID=mRNA_6812|Name=jgi.p|Trimin1|141136|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=324bp|location=Sequence derived from alignment at Contig_60:474261..474584+ (Tribonema minus UTEX_B_3156 )
AAGGAGCCCACGCTGGAGCTGCTGCAGTCACGCTTCAATACCCCTTTGGT GGACGTCGCCAGGGAGTTCAGAGTGTCGCTGACCATGATGAAGCGCCTCT GCAGGAAGCTTGGCATCCAGCGCTGGCCCCATAGGCAGATCCGGTCCCTG GACAAGCTCCTGTTCGAACTCGAGGAGAGGATCTCAGCAACCACCTCAGC CAGGGAGCTGTCCTACTTGCAAGAGCAGGTGGCACTGCTGGAGAAAAAGC GGCGGTTAGTGACTAGAGGCGCCTCCAGCGGCCTGCAGAGCGCCTTGCGG AATGCCCTATTCATGGCAGACCCT
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Coding sequence (CDS) from alignment at Contig_60:474261..474584+

>mRNA_6812 ID=mRNA_6812|Name=jgi.p|Trimin1|141136|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=324bp|location=Sequence derived from alignment at Contig_60:474261..474584+ (Tribonema minus UTEX_B_3156 )
AAGGAGCCCACGCTGGAGCTGCTGCAGTCACGCTTCAATACCCCTTTGGT
GGACGTCGCCAGGGAGTTCAGAGTGTCGCTGACCATGATGAAGCGCCTCT
GCAGGAAGCTTGGCATCCAGCGCTGGCCCCATAGGCAGATCCGGTCCCTG
GACAAGCTCCTGTTCGAACTCGAGGAGAGGATCTCAGCAACCACCTCAGC
CAGGGAGCTGTCCTACTTGCAAGAGCAGGTGGCACTGCTGGAGAAAAAGC
GGCGGTTAGTGACTAGAGGCGCCTCCAGCGGCCTGCAGAGCGCCTTGCGG
AATGCCCTATTCATGGCAGACCCT
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