mRNA_6787 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|168872
Unique NamemRNA_6787
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|168872 vs. uniprot
Match: A0A835YQX7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQX7_9STRA)

HSP 1 Score: 276 bits (705), Expect = 7.320e-94
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 1 
Query:    1 EKNETIVCREIGGVMARMWPAYLHRCHALVFVIDASSVSNADGASAALHALIAHDHLQQKPVIVCLNKVGTTTQADLATLQELLHIDDLVDNWKAGFTLCHTDAASGAGVARVLQLARALHRDPQTSKALAATATFTP 414
            EKNETIVCREIGGVMARMWPAYLHRCHALVFVIDASSVSNADGASAALHALIAHDHLQQKPVIVCLNKVGTTTQADLATLQELLHIDDLVDNWKAGFTLCHTDAASGAGVARVLQLARALHRDPQTSKALAATATFTP
Sbjct:    1 EKNETIVCREIGGVMARMWPAYLHRCHALVFVIDASSVSNADGASAALHALIAHDHLQQKPVIVCLNKVGTTTQADLATLQELLHIDDLVDNWKAGFTLCHTDAASGAGVARVLQLARALHRDPQTSKALAATATFTP 138
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BLAST of jgi.p|Trimin1|168872 vs. uniprot
Match: A0A7M7NVY6_STRPU (Uncharacterized protein n=1 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A0A7M7NVY6_STRPU)

HSP 1 Score: 63.2 bits (152), Expect = 8.750e-10
Identity = 33/109 (30.28%), Postives = 57/109 (52.29%), Query Frame = 1 
Query:    1 EKNETIVCREIGGVMARMWPAYLHRCHALVFVIDASSVSNADGASAALHALIAHDHLQQKPVIVCLNKVGTTTQADLATLQELLHIDDLVDNWKAGFTLCHTDAASGAG 327
            +KNE  V RE+GG+MA +WP Y   C  +++V+D S++S    A   L  +++   LQ   +++ LNK        +  ++ LLH++DL  +      +    A +G G
Sbjct:   52 KKNEVRV-RELGGMMAPIWPNYFADCSIVLYVVDVSNLSQVSSACIQLLHVLSDPRLQTASILIILNKSDLPPPMSIQQIRSLLHLEDLAVSANQRIDVLEVSALTGQG 159
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BLAST of jgi.p|Trimin1|168872 vs. uniprot
Match: UPI001BB0F0D2 (ADP-ribosylation factor-like protein 16 n=1 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB0F0D2)

HSP 1 Score: 61.2 bits (147), Expect = 6.060e-9
Identity = 31/114 (27.19%), Postives = 57/114 (50.00%), Query Frame = 1 
Query:    4 KNETIVCREIGGVMARMWPAYLHRCHALVFVIDASSVSNADGASAALHALIAHDHLQQKPVIVCLNKVGTTTQADLATLQELLHIDDLVDNWKAGFTLCHTDAASGAGVARVLQ 345
            K   +  RE+GG+MA +WP Y      +++V+D S++S    A   L  ++    LQ   ++V LNK        +  ++ LLH+DD+ ++      +    A +G G+  V++
Sbjct:   52 KKIEVRVRELGGMMAPIWPNYFTDSSIVLYVVDVSNMSQVSSACIQLLQVLTDPKLQNASILVVLNKSDLPLPMSMQQIRSLLHLDDIANSASQRIEVLQVSALTGQGLDEVVR 165
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|168872 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835YQX7_9STRA7.320e-94100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7M7NVY6_STRPU8.750e-1030.28Uncharacterized protein n=1 Tax=Strongylocentrotus... [more]
UPI001BB0F0D26.060e-927.19ADP-ribosylation factor-like protein 16 n=1 Tax=Ly... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_60contigContig_60:321091..321507 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|168872|e_gw1.60.82.1
BRITEko00000,ko00001,ko04031,ko04131,ko04147
KEGG Pathwayko04072,ko04144,ko05110,ko05134,map04072,map04144,map05110,map05134
KEGG koko:K07937,ko:K07977
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0006464,GO:0006471,GO:0006807,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008152,GO:0009987,GO:0012505,GO:0015031,GO:0015833,GO:0016192,GO:0019538,GO:0033036,GO:0034613,GO:0036211,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0045184,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:1901564
Preferred nameARL16
DescriptionGTP binding
COG categoryBDLTU
Max annot lvl2759|Eukaryota
EggNOG OGsCOG1100@1|root,KOG0070@2759|Eukaryota
Evalue1.73e-15
Seed ortholog296587.XP_002509229.1
Hectar predicted targeting categoryother localisation
TranscriptId169194
TrackFilteredModels1
ProteinId168872
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|168872gene_6787Tribonema minus UTEX_B_3156 geneContig_60 321091..321507 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6787_1exon_6787_1Tribonema minus UTEX_B_3156 exonContig_60 321091..321507 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6787CDS_6787Tribonema minus UTEX_B_3156 CDSContig_60 321091..321507 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|168872Trimin1|168872|e_gw1.60.82.1Tribonema minus UTEX_B_3156 polypeptideContig_60 321091..321507 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6787 ID=mRNA_6787|Name=jgi.p|Trimin1|168872|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=417bp|location=Sequence derived from alignment at Contig_60:321091..321507- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GAAAAGAACGAAACGATTGTGTGCCGAGAAATTGGGGGGGTGATGGCGCG
CATGTGGCCAGCTTATCTACATCGCTGCCATGCCCTCGTTTTTGTGATCG
ATGCCAGTTCTGTAAGCAACGCAGACGGTGCTTCCGCCGCCTTGCATGCT
CTGATCGCGCACGACCATCTACAACAAAAGCCTGTCATTGTGTGTCTGAA
CAAGGTTGGGACGACGACTCAAGCAGATTTAGCAACACTGCAAGAGCTGC
TGCACATCGATGACCTCGTGGACAACTGGAAGGCAGGCTTTACGCTCTGC
CACACCGATGCAGCAAGCGGGGCTGGCGTTGCCCGCGTGCTGCAGTTGGC
ACGCGCTCTTCATAGGGATCCACAGACAAGCAAGGCATTGGCCGCAACGG
CGACGTTTACACCATAG
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protein sequence of jgi.p|Trimin1|168872

>Trimin1|168872|e_gw1.60.82.1 ID=Trimin1|168872|e_gw1.60.82.1|Name=jgi.p|Trimin1|168872|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=139bp
EKNETIVCREIGGVMARMWPAYLHRCHALVFVIDASSVSNADGASAALHA
LIAHDHLQQKPVIVCLNKVGTTTQADLATLQELLHIDDLVDNWKAGFTLC
HTDAASGAGVARVLQLARALHRDPQTSKALAATATFTP*
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mRNA from alignment at Contig_60:321091..321507-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6787 ID=mRNA_6787|Name=jgi.p|Trimin1|168872|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=417bp|location=Sequence derived from alignment at Contig_60:321091..321507- (Tribonema minus UTEX_B_3156 )
GAAAAGAACGAAACGATTGTGTGCCGAGAAATTGGGGGGGTGATGGCGCG
CATGTGGCCAGCTTATCTACATCGCTGCCATGCCCTCGTTTTTGTGATCG
ATGCCAGTTCTGTAAGCAACGCAGACGGTGCTTCCGCCGCCTTGCATGCT
CTGATCGCGCACGACCATCTACAACAAAAGCCTGTCATTGTGTGTCTGAA
CAAGGTTGGGACGACGACTCAAGCAGATTTAGCAACACTGCAAGAGCTGC
TGCACATCGATGACCTCGTGGACAACTGGAAGGCAGGCTTTACGCTCTGC
CACACCGATGCAGCAAGCGGGGCTGGCGTTGCCCGCGTGCTGCAGTTGGC
ACGCGCTCTTCATAGGGATCCACAGACAAGCAAGGCATTGGCCGCAACGG
CGACGTTTACACCATAG
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Coding sequence (CDS) from alignment at Contig_60:321091..321507-

>mRNA_6787 ID=mRNA_6787|Name=jgi.p|Trimin1|168872|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=417bp|location=Sequence derived from alignment at Contig_60:321091..321507- (Tribonema minus UTEX_B_3156 )
GAAAAGAACGAAACGATTGTGTGCCGAGAAATTGGGGGGGTGATGGCGCG
CATGTGGCCAGCTTATCTACATCGCTGCCATGCCCTCGTTTTTGTGATCG
ATGCCAGTTCTGTAAGCAACGCAGACGGTGCTTCCGCCGCCTTGCATGCT
CTGATCGCGCACGACCATCTACAACAAAAGCCTGTCATTGTGTGTCTGAA
CAAGGTTGGGACGACGACTCAAGCAGATTTAGCAACACTGCAAGAGCTGC
TGCACATCGATGACCTCGTGGACAACTGGAAGGCAGGCTTTACGCTCTGC
CACACCGATGCAGCAAGCGGGGCTGGCGTTGCCCGCGTGCTGCAGTTGGC
ACGCGCTCTTCATAGGGATCCACAGACAAGCAAGGCATTGGCCGCAACGG
CGACGTTTACACCATAG
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