mRNA_6786 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|350279 vs. uniprot
Match: A0A835YP18_9STRA (Protein arginine methyltransferase NDUFAF7 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YP18_9STRA) HSP 1 Score: 246 bits (627), Expect = 2.020e-82 Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 1
Query: 1 MNGTLLLALFSFPKHRLLLADFDSVGEPSVTRNDPKTGFTEDQSSYLLPPGSADLCFPTDFGSLKQVYSQVTGRSGGSVHVMKQSAFFELQKTEAAAAQTRNGYNPMLEDFGNYSMLIGQ 360
MNGTLLLALFSFPKHRLLLADFDSVGEPSVTRNDPKTGFTEDQSSYLLPPGSADLCFPTDFGSLKQVYSQVTGRSGGSVHVMKQSAFFELQKTEAAAAQTRNGYNPMLEDFGNYSMLIGQ
Sbjct: 1 MNGTLLLALFSFPKHRLLLADFDSVGEPSVTRNDPKTGFTEDQSSYLLPPGSADLCFPTDFGSLKQVYSQVTGRSGGSVHVMKQSAFFELQKTEAAAAQTRNGYNPMLEDFGNYSMLIGQ 120
BLAST of jgi.p|Trimin1|350279 vs. uniprot
Match: A0A7S0N1H3_9CHLO (Protein arginine methyltransferase NDUFAF7 n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0N1H3_9CHLO) HSP 1 Score: 83.6 bits (205), Expect = 3.720e-17 Identity = 49/125 (39.20%), Postives = 71/125 (56.80%), Query Frame = 1
Query: 37 PKHRLLLADFDSVGEPSVT-RNDP-----KTGFTEDQSSYLLPPGSADLCFPTDFGSLKQVY-----SQVTGRSGG--------SVHVMKQSAFFELQKTEAAAAQTRNGYNPMLEDFGNYSMLI 354
P HR++ ADFD + + +V RN P + G T D S+YL+P G AD+ FPTDF +L+++Y S + GG + VM AF E + E +A +TR+GYNP+L+DF N L+
Sbjct: 106 PNHRIVAADFDHLPDVAVAGRNAPLVASKRAGSTHDHSTYLVPRGEADIFFPTDFAALQRIYAASSCSPIGAEGGGGDSATPPATSQVMSTQAFME-RYAEVSATRTRDGYNPLLDDFTNTRFLL 229
BLAST of jgi.p|Trimin1|350279 vs. uniprot
Match: F0WCN9_9STRA (Protein arginine methyltransferase NDUFAF7 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WCN9_9STRA) HSP 1 Score: 80.1 bits (196), Expect = 1.830e-15 Identity = 51/139 (36.69%), Postives = 67/139 (48.20%), Query Frame = 1
Query: 31 SFPKHRLLLADFDSVGEPSVTRNDP-----------------------------KTGFTEDQSSYLLPPGSADLCFPTDFGSLKQVYSQVTGRSGGSVHVMKQSAFFELQKTEAAAAQTR--NGYNPMLEDFGNYSMLI 354
SFP+HRL+ ADFDS+ P + R+ P G T D +YL+ G D+ F TDF LK+ Y QV G +V ++K SAF KT A +TR + YNPM+EDF N S L+
Sbjct: 153 SFPRHRLIAADFDSLPPPHLCRSSPIKPLYHPMSQTSLCSGTLHAANAPIVASKVQGETVDHDTYLIQKGDVDILFATDFERLKKAYCQVQGCPSDNVSIVKSSAFL---KTFADTRKTRTISRYNPMVEDFSNTSFLL 288
BLAST of jgi.p|Trimin1|350279 vs. uniprot
Match: A0A7S3C8D4_9CHLO (Protein arginine methyltransferase NDUFAF7 n=1 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S3C8D4_9CHLO) HSP 1 Score: 77.4 bits (189), Expect = 4.580e-15 Identity = 44/113 (38.94%), Postives = 64/113 (56.64%), Query Frame = 1
Query: 37 PKHRLLLADFDSVGEPSVT-RNDPKTGFT-----EDQSSYLLPPGSADLCFPTDFGSLKQVYSQVTGRSGGSVHVMKQSAFFELQKTEAAAAQTRNGYNPMLEDFGNYSMLIG 357
P H LL+ DFD + + V RN P T +D S+YL+PPGS D+ FPT+F +L +Y++V G G SAFF+ + + T +GYNP++EDF N + +G
Sbjct: 79 PSHTLLMMDFDHLPDVRVAGRNAPLVSNTVASVAQDASTYLVPPGSHDIFFPTNFEALAAMYARVAGE-GARTTTSACSAFFK-EHADLQRTTTMSGYNPLIEDFTNTKVFVG 189
BLAST of jgi.p|Trimin1|350279 vs. uniprot
Match: A0A5J4XKC6_9CHLO (Protein arginine methyltransferase NDUFAF7 n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XKC6_9CHLO) HSP 1 Score: 75.9 bits (185), Expect = 1.620e-14 Identity = 45/115 (39.13%), Postives = 63/115 (54.78%), Query Frame = 1
Query: 37 PKHRLLLADFDSV------GEPSVTRNDPKTGFTEDQSSYLLPPGSADLCFPTDFGSLKQVYSQVTGRSGGSVH--VMKQSAFFELQKTEAAAAQTRNGYNPMLEDFGNYSMLIG 357
P H ++ ADFD + G+ S G T D SYL+P G+AD+ FPTDF L+ ++ Q+ + G+V VMK AF Q + T++GYNP+LEDF N S +G
Sbjct: 76 PNHVIIAADFDELPDVTVPGQGSPLVASTMNGQTLDHPSYLVPQGTADIFFPTDFQLLQSLH-QLANQGHGAVQGQVMKTKAFMR-QHADLTTTLTKSGYNPLLEDFSNTSFYVG 188
BLAST of jgi.p|Trimin1|350279 vs. uniprot
Match: A0A059LQD1_9CHLO (Protein arginine methyltransferase NDUFAF7 n=1 Tax=Helicosporidium sp. ATCC 50920 TaxID=1291522 RepID=A0A059LQD1_9CHLO) HSP 1 Score: 77.8 bits (190), Expect = 3.410e-14 Identity = 46/117 (39.32%), Postives = 64/117 (54.70%), Query Frame = 1
Query: 37 PKHRLLLADFDSVGE--------PSVTRNDPKTGFTEDQSSYLLPPGSADLCFPTDFGSLKQVYSQVT--GRSGGSVHVMKQSAFFELQKTEAAAAQTRNGYNPMLEDFGNYSMLIG 357
P H LL ADFD + + P V + G T D ++YLLPPG+AD+ FPT+F L ++Y Q G+ GG +K SA F + E A +GY P+ ED+ N S+L+G
Sbjct: 366 PNHTLLAADFDELPDVVVPGVHAPLVASTE--RGKTLDHATYLLPPGTADIFFPTNFELLGKLYRQAAARGQGGGEARALK-SAEFMKEWAEEGATAVADGYQPLTEDYTNTSVLVG 479
BLAST of jgi.p|Trimin1|350279 vs. uniprot
Match: E1ZJG1_CHLVA (Protein arginine methyltransferase NDUFAF7 (Fragment) n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZJG1_CHLVA) HSP 1 Score: 76.6 bits (187), Expect = 8.780e-14 Identity = 47/126 (37.30%), Postives = 62/126 (49.21%), Query Frame = 1
Query: 37 PKHRLLLADFDSVGEPSVT-RNDPKT-----GFTEDQSSYLLPPGSADLCFPTDFGSLKQVYSQVT-------------GRSGGSVHVMKQSAFFELQKTEAAAAQTRNGYNPMLEDFGNYSMLIG 357
P H L+ ADFD + E SV N P G T D SYL+P G+AD+ FPTDF L +Y Q G GG+ M + F L + A TR+GYNP+L+D+ N + +G
Sbjct: 333 PSHTLIAADFDCLPEVSVAGANAPLVATTVGGTTVDHGSYLVPRGTADIFFPTDFPLLCMLYRQAAAVHRHTRTEAAGAGAPGGAAAHMCTADFMALYCPDPGATATRDGYNPLLQDYSNTAFFLG 458
BLAST of jgi.p|Trimin1|350279 vs. uniprot
Match: A0A507E426_9FUNG (Protein arginine methyltransferase NDUFAF7 n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507E426_9FUNG) HSP 1 Score: 74.3 bits (181), Expect = 5.620e-13 Identity = 44/125 (35.20%), Postives = 67/125 (53.60%), Query Frame = 1
Query: 10 TLLLALFS-----FPKHRLLLADFDSVGEPSVTRNDPKT-----GFTEDQSSYLLPPGSADLCFPTDFGSLKQVYSQVTGRSGGSVHVMKQSAFFELQKTEAAAAQTRNGYNPMLEDFGNYSMLI 354
T+ L LF FPKHRL+L+DFD++ + N P G S+YL+ PG D+ FPT+F ++ +Y+ G +G S VM Q F + + A +T++G NPML + N+ L+
Sbjct: 361 TMCLKLFDQLKQHFPKHRLILSDFDALPDAVPGINAPVVQTRYQGMMIPCSTYLVQPGWFDIFFPTNFELMRDIYNIACGETGHSGQVMTQQEFLQ-KNANLAGTRTKSGENPMLTFYQNFKFLV 484
BLAST of jgi.p|Trimin1|350279 vs. uniprot
Match: A0A5B8MNP3_9CHLO (Protein arginine methyltransferase NDUFAF7 n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MNP3_9CHLO) HSP 1 Score: 73.9 bits (180), Expect = 7.400e-13 Identity = 43/118 (36.44%), Postives = 64/118 (54.24%), Query Frame = 1
Query: 37 PKHRLLLADFDSVGEPSVT-RNDPKTGFTE-----DQSSYLLPPGSADLCFPTDFGSLKQVYSQV----TGRSGGSVHVMKQSAFFELQKTEAAAAQTRNGYNPMLEDFGNYSMLIGQ 360
P H L+L DFDS+ + + RN P TE D S+YL+P GS D+ FPT+F +L+ +YS + G G + S+ F + + T +GYNP++EDF N + +GQ
Sbjct: 325 PDHTLVLIDFDSLPDVQLRGRNAPLVSNTEMAEARDASTYLVPVGSHDIFFPTNFSALRALYSGIMTSEAGTPGRVSAATRPSSEFFKEFADLQMTTTMSGYNPLIEDFRNTQVFVGQ 442
BLAST of jgi.p|Trimin1|350279 vs. uniprot
Match: A0A2R5GN24_9STRA (Protein arginine methyltransferase NDUFAF7 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GN24_9STRA) HSP 1 Score: 73.9 bits (180), Expect = 7.620e-13 Identity = 46/131 (35.11%), Postives = 66/131 (50.38%), Query Frame = 1
Query: 34 FPKHRLLLADFDSVGEPSVT-----------------RNDPKT------GFTEDQSSYLLPPGSADLCFPTDFGSLKQVYSQVTGRSGGSVHVMKQSAFFELQKTEAAAAQTRNGYNPMLEDFGNYSMLIG 357
FP+H +L ADF+ + P ++ RN P G T D S+YL+P G+AD+ F TDF +L+ Y V G + + QS+F + + A +TR+GYNPMLED+ N IG
Sbjct: 339 FPQHEVLAADFNMLPPPEISTWTMHSRRGEPGSVFGVRNAPLVASKNDKGNTVDHSTYLVPLGTADIFFQTDFLALQAAYKSVVG-ANAHAEMRTQSSFLR-EFADFAYTETRSGYNPMLEDYHNMDFFIG 467 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|350279 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_6786 ID=mRNA_6786|Name=jgi.p|Trimin1|350279|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=384bp|location=Sequence derived from alignment at Contig_60:318891..320767+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGAATGGAACCCTCCTGCTCGCCCTGTTCAGCTTCCCGAAGCACCGCCTback to top protein sequence of jgi.p|Trimin1|350279 >Trimin1|350279|estExt_Genemark1.C_Ctg_600046 ID=Trimin1|350279|estExt_Genemark1.C_Ctg_600046|Name=jgi.p|Trimin1|350279|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=121bp MNGTLLLALFSFPKHRLLLADFDSVGEPSVTRNDPKTGFTEDQSSYLLPPback to top mRNA from alignment at Contig_60:318891..320767+ Legend: exonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_6786 ID=mRNA_6786|Name=jgi.p|Trimin1|350279|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1877bp|location=Sequence derived from alignment at Contig_60:318891..320767+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_60:318891..320767+ >mRNA_6786 ID=mRNA_6786|Name=jgi.p|Trimin1|350279|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=363bp|location=Sequence derived from alignment at Contig_60:318891..320767+ (Tribonema minus UTEX_B_3156 )back to top |