mRNA_6786 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|350279
Unique NamemRNA_6786
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|350279 vs. uniprot
Match: A0A835YP18_9STRA (Protein arginine methyltransferase NDUFAF7 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YP18_9STRA)

HSP 1 Score: 246 bits (627), Expect = 2.020e-82
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 1
Query:    1 MNGTLLLALFSFPKHRLLLADFDSVGEPSVTRNDPKTGFTEDQSSYLLPPGSADLCFPTDFGSLKQVYSQVTGRSGGSVHVMKQSAFFELQKTEAAAAQTRNGYNPMLEDFGNYSMLIGQ 360
            MNGTLLLALFSFPKHRLLLADFDSVGEPSVTRNDPKTGFTEDQSSYLLPPGSADLCFPTDFGSLKQVYSQVTGRSGGSVHVMKQSAFFELQKTEAAAAQTRNGYNPMLEDFGNYSMLIGQ
Sbjct:    1 MNGTLLLALFSFPKHRLLLADFDSVGEPSVTRNDPKTGFTEDQSSYLLPPGSADLCFPTDFGSLKQVYSQVTGRSGGSVHVMKQSAFFELQKTEAAAAQTRNGYNPMLEDFGNYSMLIGQ 120          
BLAST of jgi.p|Trimin1|350279 vs. uniprot
Match: A0A7S0N1H3_9CHLO (Protein arginine methyltransferase NDUFAF7 n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0N1H3_9CHLO)

HSP 1 Score: 83.6 bits (205), Expect = 3.720e-17
Identity = 49/125 (39.20%), Postives = 71/125 (56.80%), Query Frame = 1
Query:   37 PKHRLLLADFDSVGEPSVT-RNDP-----KTGFTEDQSSYLLPPGSADLCFPTDFGSLKQVY-----SQVTGRSGG--------SVHVMKQSAFFELQKTEAAAAQTRNGYNPMLEDFGNYSMLI 354
            P HR++ ADFD + + +V  RN P     + G T D S+YL+P G AD+ FPTDF +L+++Y     S +    GG        +  VM   AF E +  E +A +TR+GYNP+L+DF N   L+
Sbjct:  106 PNHRIVAADFDHLPDVAVAGRNAPLVASKRAGSTHDHSTYLVPRGEADIFFPTDFAALQRIYAASSCSPIGAEGGGGDSATPPATSQVMSTQAFME-RYAEVSATRTRDGYNPLLDDFTNTRFLL 229          
BLAST of jgi.p|Trimin1|350279 vs. uniprot
Match: F0WCN9_9STRA (Protein arginine methyltransferase NDUFAF7 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WCN9_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 1.830e-15
Identity = 51/139 (36.69%), Postives = 67/139 (48.20%), Query Frame = 1
Query:   31 SFPKHRLLLADFDSVGEPSVTRNDP-----------------------------KTGFTEDQSSYLLPPGSADLCFPTDFGSLKQVYSQVTGRSGGSVHVMKQSAFFELQKTEAAAAQTR--NGYNPMLEDFGNYSMLI 354
            SFP+HRL+ ADFDS+  P + R+ P                               G T D  +YL+  G  D+ F TDF  LK+ Y QV G    +V ++K SAF    KT A   +TR  + YNPM+EDF N S L+
Sbjct:  153 SFPRHRLIAADFDSLPPPHLCRSSPIKPLYHPMSQTSLCSGTLHAANAPIVASKVQGETVDHDTYLIQKGDVDILFATDFERLKKAYCQVQGCPSDNVSIVKSSAFL---KTFADTRKTRTISRYNPMVEDFSNTSFLL 288          
BLAST of jgi.p|Trimin1|350279 vs. uniprot
Match: A0A7S3C8D4_9CHLO (Protein arginine methyltransferase NDUFAF7 n=1 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S3C8D4_9CHLO)

HSP 1 Score: 77.4 bits (189), Expect = 4.580e-15
Identity = 44/113 (38.94%), Postives = 64/113 (56.64%), Query Frame = 1
Query:   37 PKHRLLLADFDSVGEPSVT-RNDPKTGFT-----EDQSSYLLPPGSADLCFPTDFGSLKQVYSQVTGRSGGSVHVMKQSAFFELQKTEAAAAQTRNGYNPMLEDFGNYSMLIG 357
            P H LL+ DFD + +  V  RN P    T     +D S+YL+PPGS D+ FPT+F +L  +Y++V G  G        SAFF+ +  +     T +GYNP++EDF N  + +G
Sbjct:   79 PSHTLLMMDFDHLPDVRVAGRNAPLVSNTVASVAQDASTYLVPPGSHDIFFPTNFEALAAMYARVAGE-GARTTTSACSAFFK-EHADLQRTTTMSGYNPLIEDFTNTKVFVG 189          
BLAST of jgi.p|Trimin1|350279 vs. uniprot
Match: A0A5J4XKC6_9CHLO (Protein arginine methyltransferase NDUFAF7 n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XKC6_9CHLO)

HSP 1 Score: 75.9 bits (185), Expect = 1.620e-14
Identity = 45/115 (39.13%), Postives = 63/115 (54.78%), Query Frame = 1
Query:   37 PKHRLLLADFDSV------GEPSVTRNDPKTGFTEDQSSYLLPPGSADLCFPTDFGSLKQVYSQVTGRSGGSVH--VMKQSAFFELQKTEAAAAQTRNGYNPMLEDFGNYSMLIG 357
            P H ++ ADFD +      G+ S        G T D  SYL+P G+AD+ FPTDF  L+ ++ Q+  +  G+V   VMK  AF   Q  +     T++GYNP+LEDF N S  +G
Sbjct:   76 PNHVIIAADFDELPDVTVPGQGSPLVASTMNGQTLDHPSYLVPQGTADIFFPTDFQLLQSLH-QLANQGHGAVQGQVMKTKAFMR-QHADLTTTLTKSGYNPLLEDFSNTSFYVG 188          
BLAST of jgi.p|Trimin1|350279 vs. uniprot
Match: A0A059LQD1_9CHLO (Protein arginine methyltransferase NDUFAF7 n=1 Tax=Helicosporidium sp. ATCC 50920 TaxID=1291522 RepID=A0A059LQD1_9CHLO)

HSP 1 Score: 77.8 bits (190), Expect = 3.410e-14
Identity = 46/117 (39.32%), Postives = 64/117 (54.70%), Query Frame = 1
Query:   37 PKHRLLLADFDSVGE--------PSVTRNDPKTGFTEDQSSYLLPPGSADLCFPTDFGSLKQVYSQVT--GRSGGSVHVMKQSAFFELQKTEAAAAQTRNGYNPMLEDFGNYSMLIG 357
            P H LL ADFD + +        P V   +   G T D ++YLLPPG+AD+ FPT+F  L ++Y Q    G+ GG    +K SA F  +  E  A    +GY P+ ED+ N S+L+G
Sbjct:  366 PNHTLLAADFDELPDVVVPGVHAPLVASTE--RGKTLDHATYLLPPGTADIFFPTNFELLGKLYRQAAARGQGGGEARALK-SAEFMKEWAEEGATAVADGYQPLTEDYTNTSVLVG 479          
BLAST of jgi.p|Trimin1|350279 vs. uniprot
Match: E1ZJG1_CHLVA (Protein arginine methyltransferase NDUFAF7 (Fragment) n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZJG1_CHLVA)

HSP 1 Score: 76.6 bits (187), Expect = 8.780e-14
Identity = 47/126 (37.30%), Postives = 62/126 (49.21%), Query Frame = 1
Query:   37 PKHRLLLADFDSVGEPSVT-RNDPKT-----GFTEDQSSYLLPPGSADLCFPTDFGSLKQVYSQVT-------------GRSGGSVHVMKQSAFFELQKTEAAAAQTRNGYNPMLEDFGNYSMLIG 357
            P H L+ ADFD + E SV   N P       G T D  SYL+P G+AD+ FPTDF  L  +Y Q               G  GG+   M  + F  L   +  A  TR+GYNP+L+D+ N +  +G
Sbjct:  333 PSHTLIAADFDCLPEVSVAGANAPLVATTVGGTTVDHGSYLVPRGTADIFFPTDFPLLCMLYRQAAAVHRHTRTEAAGAGAPGGAAAHMCTADFMALYCPDPGATATRDGYNPLLQDYSNTAFFLG 458          
BLAST of jgi.p|Trimin1|350279 vs. uniprot
Match: A0A507E426_9FUNG (Protein arginine methyltransferase NDUFAF7 n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507E426_9FUNG)

HSP 1 Score: 74.3 bits (181), Expect = 5.620e-13
Identity = 44/125 (35.20%), Postives = 67/125 (53.60%), Query Frame = 1
Query:   10 TLLLALFS-----FPKHRLLLADFDSVGEPSVTRNDPKT-----GFTEDQSSYLLPPGSADLCFPTDFGSLKQVYSQVTGRSGGSVHVMKQSAFFELQKTEAAAAQTRNGYNPMLEDFGNYSMLI 354
            T+ L LF      FPKHRL+L+DFD++ +     N P       G     S+YL+ PG  D+ FPT+F  ++ +Y+   G +G S  VM Q  F + +    A  +T++G NPML  + N+  L+
Sbjct:  361 TMCLKLFDQLKQHFPKHRLILSDFDALPDAVPGINAPVVQTRYQGMMIPCSTYLVQPGWFDIFFPTNFELMRDIYNIACGETGHSGQVMTQQEFLQ-KNANLAGTRTKSGENPMLTFYQNFKFLV 484          
BLAST of jgi.p|Trimin1|350279 vs. uniprot
Match: A0A5B8MNP3_9CHLO (Protein arginine methyltransferase NDUFAF7 n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MNP3_9CHLO)

HSP 1 Score: 73.9 bits (180), Expect = 7.400e-13
Identity = 43/118 (36.44%), Postives = 64/118 (54.24%), Query Frame = 1
Query:   37 PKHRLLLADFDSVGEPSVT-RNDPKTGFTE-----DQSSYLLPPGSADLCFPTDFGSLKQVYSQV----TGRSGGSVHVMKQSAFFELQKTEAAAAQTRNGYNPMLEDFGNYSMLIGQ 360
            P H L+L DFDS+ +  +  RN P    TE     D S+YL+P GS D+ FPT+F +L+ +YS +     G  G      + S+ F  +  +     T +GYNP++EDF N  + +GQ
Sbjct:  325 PDHTLVLIDFDSLPDVQLRGRNAPLVSNTEMAEARDASTYLVPVGSHDIFFPTNFSALRALYSGIMTSEAGTPGRVSAATRPSSEFFKEFADLQMTTTMSGYNPLIEDFRNTQVFVGQ 442          
BLAST of jgi.p|Trimin1|350279 vs. uniprot
Match: A0A2R5GN24_9STRA (Protein arginine methyltransferase NDUFAF7 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GN24_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 7.620e-13
Identity = 46/131 (35.11%), Postives = 66/131 (50.38%), Query Frame = 1
Query:   34 FPKHRLLLADFDSVGEPSVT-----------------RNDPKT------GFTEDQSSYLLPPGSADLCFPTDFGSLKQVYSQVTGRSGGSVHVMKQSAFFELQKTEAAAAQTRNGYNPMLEDFGNYSMLIG 357
            FP+H +L ADF+ +  P ++                 RN P        G T D S+YL+P G+AD+ F TDF +L+  Y  V G +     +  QS+F   +  + A  +TR+GYNPMLED+ N    IG
Sbjct:  339 FPQHEVLAADFNMLPPPEISTWTMHSRRGEPGSVFGVRNAPLVASKNDKGNTVDHSTYLVPLGTADIFFQTDFLALQAAYKSVVG-ANAHAEMRTQSSFLR-EFADFAYTETRSGYNPMLEDYHNMDFFIG 467          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|350279 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YP18_9STRA2.020e-82100.00Protein arginine methyltransferase NDUFAF7 n=1 Tax... [more]
A0A7S0N1H3_9CHLO3.720e-1739.20Protein arginine methyltransferase NDUFAF7 n=1 Tax... [more]
F0WCN9_9STRA1.830e-1536.69Protein arginine methyltransferase NDUFAF7 n=1 Tax... [more]
A0A7S3C8D4_9CHLO4.580e-1538.94Protein arginine methyltransferase NDUFAF7 n=1 Tax... [more]
A0A5J4XKC6_9CHLO1.620e-1439.13Protein arginine methyltransferase NDUFAF7 n=1 Tax... [more]
A0A059LQD1_9CHLO3.410e-1439.32Protein arginine methyltransferase NDUFAF7 n=1 Tax... [more]
E1ZJG1_CHLVA8.780e-1437.30Protein arginine methyltransferase NDUFAF7 (Fragme... [more]
A0A507E426_9FUNG5.620e-1335.20Protein arginine methyltransferase NDUFAF7 n=1 Tax... [more]
A0A5B8MNP3_9CHLO7.400e-1336.44Protein arginine methyltransferase NDUFAF7 n=1 Tax... [more]
A0A2R5GN24_9STRA7.620e-1335.11Protein arginine methyltransferase NDUFAF7 n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_60contigContig_60:318891..320767 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|350279|estExt_Genemark1.C_Ctg_600046
DescriptionArginine methyltransferase involved in the assembly or stability of mitochondrial NADH ubiquinone oxidoreductase complex (complex I)
COG categoryH
Max annot lvl3041|Chlorophyta
EggNOG OGs2CMRH@1|root,2QRKD@2759|Eukaryota,37HTZ@33090|Viridiplantae,34HZH@3041|Chlorophyta
Evalue3.36e-16
Seed ortholog248742.XP_005650460.1
Hectar predicted targeting categorysignal peptide
TranscriptId350601
TrackFilteredModels1
ProteinId350279
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350279gene_6786Tribonema minus UTEX_B_3156 geneContig_60 318891..320767 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6786_1exon_6786_1Tribonema minus UTEX_B_3156 exonContig_60 318891..318988 +
exon_6786_2exon_6786_2Tribonema minus UTEX_B_3156 exonContig_60 320204..320303 +
exon_6786_3exon_6786_3Tribonema minus UTEX_B_3156 exonContig_60 320582..320767 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6786CDS_6786Tribonema minus UTEX_B_3156 CDSContig_60 318891..318988 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_6786UTR3_6786Tribonema minus UTEX_B_3156 three_prime_UTRContig_60 320747..320767 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350279Trimin1|350279|estExt_Genemark1.C_Ctg_600046Tribonema minus UTEX_B_3156 polypeptideContig_60 318891..320746 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6786 ID=mRNA_6786|Name=jgi.p|Trimin1|350279|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=384bp|location=Sequence derived from alignment at Contig_60:318891..320767+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAATGGAACCCTCCTGCTCGCCCTGTTCAGCTTCCCGAAGCACCGCCT
GCTGCTGGCAGATTTTGACAGTGTTGGCGAGCCCTCCGTCACTCGCAATG
ATCCAAAAACGGGCTTCACAGAGGACCAGTCCTCGTACCTGCTGCCGCCA
GGCTCTGCAGACCTGTGCTTCCCCACTGACTTTGGCAGCTTGAAGCAGGT
GTACTCTCAGGTGACAGGCCGCAGCGGCGGCAGCGTTCACGTCATGAAGC
AGAGCGCCTTCTTTGAGCTCCAGAAGACCGAGGCAGCAGCGGCTCAGACC
CGCAACGGCTACAATCCCATGCTCGAGGATTTTGGCAATTACTCGATGCT
TATTGGGCAGTGAATGGATGAAAGCATCTACTTC
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protein sequence of jgi.p|Trimin1|350279

>Trimin1|350279|estExt_Genemark1.C_Ctg_600046 ID=Trimin1|350279|estExt_Genemark1.C_Ctg_600046|Name=jgi.p|Trimin1|350279|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=121bp
MNGTLLLALFSFPKHRLLLADFDSVGEPSVTRNDPKTGFTEDQSSYLLPP
GSADLCFPTDFGSLKQVYSQVTGRSGGSVHVMKQSAFFELQKTEAAAAQT
RNGYNPMLEDFGNYSMLIGQ*
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mRNA from alignment at Contig_60:318891..320767+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6786 ID=mRNA_6786|Name=jgi.p|Trimin1|350279|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1877bp|location=Sequence derived from alignment at Contig_60:318891..320767+ (Tribonema minus UTEX_B_3156 )
ATGAATGGAACCCTCCTGCTCGCCCTGTTCAGCTTCCCGAAGCACCGCCT GCTGCTGGCAGATTTTGACAGTGTTGGCGAGCCCTCCGTCACTCGCAAGT CCGCCGCTGCATACCAAGACACCATTACAGGCGCCCACCTGGCGCCATTG GTATCTACAAGGTGTGCACCCATGTCGCGCTGAATTTCAGGCTGATCCTG AGATGTGTCAGGTGCCACGGGTTTGCGATGTCTACATGTACAGCGTGGAG TGTCAGTGTTTGAAGTACGTACGTAGCTTCGTGTACGTATAACACGAGCG GCACCATATGAGGTACACAGATGCTCTGTGCGCGTGCGTCTCGTGCATCA CCCCATGTAGTACGTGCACACCTGTGTGCACGGCACGCTCGTCACCACAT GAAGTACCTACATACCTATGCGTACATACATAGTACCTACCTCGTTGCTG AGGAGGCCTGGCGGACTCTTGAAGTCTGCAGCAGTGAGGCTCCCACAACA GGATGCTGCTCTGCCAAAACCCGATACTTCAAGTACATGTCAGCACTGTG GTCCTTAGCTGGGGCACTGCACGTCACATTCTAACTGTCGCATCATGCTT GAAGAGACATCCTTGTGCTTTGGCAGTCCTGCTCCTGGTAACCGTAACTG AAACTGTAATTGGTAACGACACACTGCAGAGTCGCAGTAGGCAGACCTGC ACGGGCCCTCCAGTCAACATGTTGCTACGTGCACTCGATCCCCGCACGGC TTTGCGTTGTGACGCTTGACAGGTGCCAGTTCTATCTGCTGGCTGTCGCA TGTTTGTGTCGCGGCGCGCGTGAACTGTTGTGCAGTGAAGTGTTGTGCAC GCATGCATCTGATTTCAGGTGCACGGTAATCTGCATAGCCTACATAAACA GCAGTAAACGCATGTTACATGGATGTGATAGGTGTGTTACAAGTAGCATG CGCACTTGGCTACCTTCGCCAACATGTCGCTTCTCATGACCGCTACAGGG CCAATATGTTGGGTCGGCTGGTTGCACTTGCACTCCGGGGGGTCGGAGCA CGGCTGCCAGTATTGATGATTTGTTTTGTTCTGCAACAGCAGCATCCTGT TGCGCAGCAATCAGCAGACACGCCAGAAACCGTCCGCAGCGCACATGATG GAGCCATCTTGCCCGTGCAGCCGCCAATTTGTGGTACGCTAGCAAAGGCT GGTTTTAGCAGCATTCTAGGCTGTGTCAACAACGCATGTAAGCTCTGTGC TGCCCCAACGCTTTGTCTGCTGTGCCTGAAACCTATTGAACTCTTGGCCT CTCTCCTTCGCAGTGATCCAAAAACGGGCTTCACAGAGGACCAGTCCTCG TACCTGCTGCCGCCAGGCTCTGCAGACCTGTGCTTCCCCACTGACTTTGG CAGCTTGAAGCAGGTGAGCTCCAGTCACTCAGCTCATGGCGTTTACTGCA GGACTGCGCTTCCAGTTTTGCGCATCGCAGCATGAGCCAGTCAGTGCACT GCCAAAGTCCTGTCTTCTGCCATAGATGACATTACATGTACATAGCAGTT GTTTGGTCTGTCCGGCCTGTACTTTGGAGGAAGTATATGGATTGCTGAGC TGCAGGATTGAGCCAACACACCTGCCACCATGCCATGGACATGATTCACA AAAACATTTTGCGCCTTTTCCACTTTCCAACCTCCGCACAGGTGTACTCT CAGGTGACAGGCCGCAGCGGCGGCAGCGTTCACGTCATGAAGCAGAGCGC CTTCTTTGAGCTCCAGAAGACCGAGGCAGCAGCGGCTCAGACCCGCAACG GCTACAATCCCATGCTCGAGGATTTTGGCAATTACTCGATGCTTATTGGG CAGTGAATGGATGAAAGCATCTACTTC
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Coding sequence (CDS) from alignment at Contig_60:318891..320767+

>mRNA_6786 ID=mRNA_6786|Name=jgi.p|Trimin1|350279|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=363bp|location=Sequence derived from alignment at Contig_60:318891..320767+ (Tribonema minus UTEX_B_3156 )
ATGAATGGAACCCTCCTGCTCGCCCTGTTCAGCTTCCCGAAGCACCGCCT
GCTGCTGGCAGATTTTGACAGTGTTGGCGAGCCCTCCGTCACTCGCAATG
ATCCAAAAACGGGCTTCACAGAGGACCAGTCCTCGTACCTGCTGCCGCCA
GGCTCTGCAGACCTGTGCTTCCCCACTGACTTTGGCAGCTTGAAGCAGGT
GTACTCTCAGGTGACAGGCCGCAGCGGCGGCAGCGTTCACGTCATGAAGC
AGAGCGCCTTCTTTGAGCTCCAGAAGACCGAGGCAGCAGCGGCTCAGACC
CGCAACGGCTACAATCCCATGCTCGAGGATTTTGGCAATTACTCGATGCT
TATTGGGCAGTGA
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