mRNA_6755 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|168901 vs. uniprot
Match: A0A835YP01_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YP01_9STRA) HSP 1 Score: 350 bits (897), Expect = 6.250e-122 Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 1
Query: 1 MNRSRKGQAQIEDFSKAMNKVKDFVENVPPLAQDPGLGEILTIARAADARKAQNINALRVAQLTIVTNFMVVLEGTSRPQNQAIAASIIEAMEEEHGRVTKQQGTPDSGWILLDYGDIIIHIMTPKSRAYYDLETFWREGERVDLSGVLVPNTVPSTRGGASFLDEEDEEDPFWS 525
MNRSRKGQAQIEDFSKAMNKVKDFVENVPPLAQDPGLGEILTIARAADARKAQNINALRVAQLTIVTNFMVVLEGTSRPQNQAIAASIIEAMEEEHGRVTKQQGTPDSGWILLDYGDIIIHIMTPKSRAYYDLETFWREGERVDLSGVLVPNTVPSTRGGASFLDEEDEEDPFWS
Sbjct: 1 MNRSRKGQAQIEDFSKAMNKVKDFVENVPPLAQDPGLGEILTIARAADARKAQNINALRVAQLTIVTNFMVVLEGTSRPQNQAIAASIIEAMEEEHGRVTKQQGTPDSGWILLDYGDIIIHIMTPKSRAYYDLETFWREGERVDLSGVLVPNTVPSTRGGASFLDEEDEEDPFWS 175
BLAST of jgi.p|Trimin1|168901 vs. uniprot
Match: D8LM97_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM97_ECTSI) HSP 1 Score: 186 bits (473), Expect = 1.960e-57 Identity = 100/175 (57.14%), Postives = 120/175 (68.57%), Query Frame = 1
Query: 1 MNRSRKGQAQIEDFSKAMNKVKDFVENVPPLAQDPGLGEILTIARAADARKAQNINALRVAQLTIVTNFMVVLEGTSRPQNQAIAASIIEAMEEEHGRVTKQQGTPDSGWILLDYGDIIIHIMTPKSRAYYDLETFWREGERVDLSGVLVPNTVPSTRGGASFLDEEDEEDPFWS 525
MN +K + + + F++ M+ V + DP L E+LT +AAD RKA NI A+RVA LT++T FMVVLEG SRPQNQAIA +I E MEE H R TK QG P+SGWILLDYGDII+HIMTPKSR+YYDLE+FW GERV L GVL PN VP + +E DPFWS
Sbjct: 2 MNSGKKARKKEQQFAEGMSPSDGGDYPVCAMEDDPTLPEVLTAVKAADERKAGNIVAIRVATLTVMTEFMVVLEGNSRPQNQAIAQNIEEKMEEMHQRKTKSQGAPESGWILLDYGDIIVHIMTPKSRSYYDLESFWSNGERVPLDGVLKPN-VPEPE-----IAVVEEVDPFWS 170
BLAST of jgi.p|Trimin1|168901 vs. uniprot
Match: A0A6H5KVM5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVM5_9PHAE) HSP 1 Score: 186 bits (472), Expect = 5.650e-56 Identity = 101/179 (56.42%), Postives = 118/179 (65.92%), Query Frame = 1
Query: 19 GQAQIEDFSKAMNKVKDFVENVPP----------LAQDPGLGEILTIARAADARKAQNINALRVAQLTIVTNFMVVLEGTSRPQNQAIAASIIEAMEEEHGRVTKQQGTPDSGWILLDYGDIIIHIMTPKSRAYYDLETFWREGERVDLSGVLVPNTVPSTRGGASFLDEEDEEDPFWS 525
G + +KA K + F E + P + DP L E+LT +AAD RKA NI A+RVA LT++T FMVVLEG SRPQNQAIA +I E MEE H R T QGTP+SGWILLDYGDII+HIMTPKSR+YYDLE+FW GERV L GVL PN VP + +E DPFWS
Sbjct: 96 GALMMNSGNKARKKEQQFAEGMSPSDGGDYPVCAMEDDPTLPEVLTAVKAADERKAGNIVAIRVATLTVMTEFMVVLEGNSRPQNQAIAQNIEEKMEEMHQRKTNSQGTPESGWILLDYGDIIVHIMTPKSRSYYDLESFWSNGERVPLDGVLKPN-VPEPE-----VAVVEEVDPFWS 268
BLAST of jgi.p|Trimin1|168901 vs. uniprot
Match: A0A7S2Y0E5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0E5_9STRA) HSP 1 Score: 177 bits (448), Expect = 5.760e-53 Identity = 85/148 (57.43%), Postives = 111/148 (75.00%), Query Frame = 1
Query: 88 PLAQDPGLGEILTIARAADARKAQNINALRVAQLTIVTNFMVVLEGTSRPQNQAIAASIIEAMEEEHGRVTKQ--QGTPDSGWILLDYGDIIIHIMTPKSRAYYDLETFWREGERVDLSGVLVPNTVPSTRGGASFLDEEDEEDPFWS 525
P+ DP L E+LTI +A D RKAQNI A+RV+ LT+ +F+VV+ GTSRPQNQAI+ +I++ MEE HG ++ +GT DSGW+LLDYGDI++HIMTPKSRA+YD+E FW +GE VDLSGV++PNT T D ++ DPFWS
Sbjct: 79 PVELDPTLPEVLTIVKAGDMRKAQNIKAIRVSSLTVQMSFLVVMSGTSRPQNQAISRAIVDDMEEVHGLRPREPHEGTADSGWMLLDYGDIVVHIMTPKSRAFYDIEGFWGKGEPVDLSGVVLPNTAAET------ADSQEPADPFWS 220
BLAST of jgi.p|Trimin1|168901 vs. uniprot
Match: A0A7S0CC84_9STRA (Hypothetical protein n=2 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CC84_9STRA) HSP 1 Score: 163 bits (413), Expect = 1.970e-47 Identity = 89/176 (50.57%), Postives = 113/176 (64.20%), Query Frame = 1
Query: 67 DFVENVP-------------PLAQDPGLGEILTIARAADARKAQNINALRVAQLTIVTNFMVVLEGTSRPQNQAIAASIIEAMEEEH-GRVT----KQQGTPDSGWILLDYGDIIIHIMTPKSRAYYDLETFWREGERVDLSGVLVPNTVP-----STRGGASFLDEEDEEDPFWS 525
DF+E +P P + D I TI +AAD RKA NI A+RV++LT VT F++VL G SRPQNQAIAASI++ +EE H GR K +GT DSGWIL+DYGD+++HIMTPKSR +YDLE W+ GE +DLS VL+ N P + G LD +E+DPFWS
Sbjct: 64 DFIEKIPTGPSVDASDVPPGPPSNDDLAPFIRTIVKAADERKADNIRAIRVSKLTAVTCFIIVLSGNSRPQNQAIAASILDDVEEFHDGRKPRNDGKPEGTADSGWILVDYGDVMVHIMTPKSRLFYDLEGQWKSGEEMDLSDVLIANAPPMFDGIGSDGNKQMLDLSEEDDPFWS 239
BLAST of jgi.p|Trimin1|168901 vs. uniprot
Match: A0A7R9YBC2_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YBC2_9STRA) HSP 1 Score: 154 bits (389), Expect = 6.340e-44 Identity = 84/182 (46.15%), Postives = 115/182 (63.19%), Query Frame = 1
Query: 10 SRKGQAQIEDFSKAMNKVKDFVENVPPLAQDPGLGEILTIARAADARKAQNINALRVAQLTIVTNFMVVLEGTSRPQNQAIAASIIEAMEEEHGRVT-KQQGTPDSGWILLDYGDIIIHIMTPKSRAYYDLETFWREGERVDLSGVLVPNTVPSTR-------GGASFLD--EEDEEDPFWS 525
S + Q + E F +M + +E P+ + P L + I RAADARKA N V +T +FM+V G SRPQNQAIAA +++ +EE++GR +QGT +SGWILLDYGD+I+H+MTPKSRAYYDLE FW+ G+R+++ +L+PN R GG +D E E+DPFWS
Sbjct: 50 STRKQRRKEQFD-SMYAPSERLEPPGPVDEHPSLPLVHDIVRAADARKADNPVVYHVESVTPSNSFMIVCSGNSRPQNQAIAAHVVDEVEEQYGRKPDSRQGTAESGWILLDYGDVIVHVMTPKSRAYYDLEGFWKNGKRLEIEHLLLPNVNTDDRTRAAKDAGGDGAVDFRELGEDDPFWS 230
BLAST of jgi.p|Trimin1|168901 vs. uniprot
Match: A0A7S2N440_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2N440_9STRA) HSP 1 Score: 151 bits (381), Expect = 3.540e-42 Identity = 85/162 (52.47%), Postives = 112/162 (69.14%), Query Frame = 1
Query: 88 PLAQDPGLGEILTIARAADARKAQNINALRVAQLTIVTNFMVVLEGTSRPQNQAIAASIIEAMEEEH-GRVTKQQGTP----DSGWILLDYGDIIIHIMTPKSRAYYDLETFWRE--GERVDLSGVLVPNTVPSTR---------GGASFLDEEDEEDPFWS 525
P QD + TIA+AAD RKA++I ALRV+++T VT+F+V++ G SRPQNQAI++SI + +EEE G T+ G P DSGWILLDYGD+++H+MTPKSR +YD+E WRE GE +DLS VL+PN+V S GG + + EED DPFWS
Sbjct: 117 PPHQDDLAPLVRTIAKAADLRKAEDIVALRVSKITAVTSFIVIVSGNSRPQNQAISSSIRDDVEEEFDGMKTRGSGVPEGTADSGWILLDYGDVMVHVMTPKSRLFYDIEGQWREKGGEYMDLSDVLLPNSVTSGNEDGDDAQLGGGMAGMKEED--DPFWS 276
BLAST of jgi.p|Trimin1|168901 vs. uniprot
Match: A0A7S0QR45_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0QR45_9CRYP) HSP 1 Score: 144 bits (364), Expect = 5.560e-40 Identity = 71/129 (55.04%), Postives = 92/129 (71.32%), Query Frame = 1
Query: 88 PLAQDPGLGEILTIARAADARKAQNINALRVAQLTIVTNFMVVLEGTSRPQNQAIAASIIEAMEEEHGRVTKQQGTPDSGWILLDYGDIIIHIMTPKSRAYYDLETFWREGERVDLSGVLVPNTVPSTR 474
PLA+DP L I I RAAD RKAQ+I A+RVA LT T F V ++G+SRP QAI+A+I + M E+H R K QGTPDSGWILLDYG++I+++MTP +R +YDLE WR GER+ + +L P + R
Sbjct: 96 PLAEDPSLPMIEDIIRAADDRKAQSIWAVRVAHLTYSTEFFVNVQGSSRPMLQAISANIEDMMMEKHQRSIKWQGTPDSGWILLDYGEVIVNVMTPAARDFYDLEGLWRHGERIPMDHILQPGAAAAAR 224
BLAST of jgi.p|Trimin1|168901 vs. uniprot
Match: W7U178_9STRA (Ribosome-associated, Iojap n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U178_9STRA) HSP 1 Score: 143 bits (361), Expect = 4.510e-39 Identity = 77/163 (47.24%), Postives = 101/163 (61.96%), Query Frame = 1
Query: 67 DFVENVPPLAQDPGLGEILTIARAADARKAQNINALRVAQLTIVTNFMVVLEGTSRPQNQAIAASIIEAMEEEHGRVTKQ--QGTPDSGWILLDYGDIIIHIMTPKSRAYYDLETFWREGERVDLSGVLVPNTVPSTRGGASFL--------DEEDEEDPFWS 525
D E PLA+D L I TIA AAD RK +++ ALRV++LT V++F V++ G SRPQ QAIA +I E M E+HG + +GT DSGWILLDYG +++++MTP +R +Y LE W+ GE VDLS +L PN P + G D ED FWS
Sbjct: 124 DIEEETVPLAEDETLPVIETIASAADMRKGEDVLALRVSRLTTVSSFFVLVSGNSRPQIQAIAGAIEEDMLEKHGLEVRNGGEGTADSGWILLDYGSVVVNVMTPVARKFYALEKLWKNGEEVDLSHILRPNLPPGSEGXXXXXXXXXXXXPDPSLMEDAFWS 286
BLAST of jgi.p|Trimin1|168901 vs. uniprot
Match: A0A7S0VSN1_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VSN1_9CRYP) HSP 1 Score: 142 bits (357), Expect = 1.880e-38 Identity = 76/154 (49.35%), Postives = 98/154 (63.64%), Query Frame = 1
Query: 61 VKDFVENVPPLAQDPGLGEILTIARAADARKAQNINALRVAQLTIVTNFMVVLEGTSRPQNQAIAASIIEAMEEEHGRVTKQQGTPDSGWILLDYGDIIIHIMTPKSRAYYDLETFWREGERVDLSGVLVPNTVPSTRGGASFLDEEDEEDPFW 522
++ E PL +DP L I I AAD RK + I A RV+ LT T+F V +EGTSRP QAIAA++ E M E+HGR K QG PDSGWILLDYGD+I++I+T +R YYDLE+ W+ GE + L ++VPN ++ DEE ED W
Sbjct: 104 MQSVAEPEGPLEEDPSLPMIEDIIVAADERKGERIWAARVSHLTFTTSFFVNVEGTSRPMLQAIAANVEEMMLEKHGREIKWQGKPDSGWILLDYGDVIVNILTTAAREYYDLESLWKNGELIPLDHLVVPNFNAAS-------DEEALEDGDW 250 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|168901 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_6755 ID=mRNA_6755|Name=jgi.p|Trimin1|168901|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=528bp|location=Sequence derived from alignment at Contig_60:161700..163251+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGAACAGGAGCAGAAAGGGGCAAGCTCAGATAGAAGACTTCAGCAAGGCback to top protein sequence of jgi.p|Trimin1|168901 >Trimin1|168901|e_gw1.60.207.1 ID=Trimin1|168901|e_gw1.60.207.1|Name=jgi.p|Trimin1|168901|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=176bp MNRSRKGQAQIEDFSKAMNKVKDFVENVPPLAQDPGLGEILTIARAADARback to top mRNA from alignment at Contig_60:161700..163251+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_6755 ID=mRNA_6755|Name=jgi.p|Trimin1|168901|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1552bp|location=Sequence derived from alignment at Contig_60:161700..163251+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_60:161700..163251+ >mRNA_6755 ID=mRNA_6755|Name=jgi.p|Trimin1|168901|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=528bp|location=Sequence derived from alignment at Contig_60:161700..163251+ (Tribonema minus UTEX_B_3156 )back to top |