mRNA_6728 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|348523 vs. uniprot
Match: A0A836CI35_9STRA (Acireductone dioxygenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI35_9STRA) HSP 1 Score: 400 bits (1029), Expect = 3.150e-141 Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 1
Query: 19 MPLEAWYMDDDTETDQREPHRKVPNEPCSFETLDSLGVLHWHLDADNHETDPALAAIRAERGYTYSDIITVSADTLPNYEAKIRSFYEEHMHTDEEIRYLLDGTGYFDVRDARDRWIRVAMGKGDMIVLPAGIYHRFTLDANNYTKAMRLFVGAPVWTPHNRPQDAHPVRRQYVEAFVAPPAAAAAAEVH 588
MPLEAWYMDDDTETDQREPHRKVPNEPCSFETLDSLGVLHWHLDADNHETDPALAAIRAERGYTYSDIITVSADTLPNYEAKIRSFYEEHMHTDEEIRYLLDGTGYFDVRDARDRWIRVAMGKGDMIVLPAGIYHRFTLDANNYTKAMRLFVGAPVWTPHNRPQDAHPVRRQYVEAFVAPPAAAAAAEVH
Sbjct: 1 MPLEAWYMDDDTETDQREPHRKVPNEPCSFETLDSLGVLHWHLDADNHETDPALAAIRAERGYTYSDIITVSADTLPNYEAKIRSFYEEHMHTDEEIRYLLDGTGYFDVRDARDRWIRVAMGKGDMIVLPAGIYHRFTLDANNYTKAMRLFVGAPVWTPHNRPQDAHPVRRQYVEAFVAPPAAAAAAEVH 190
BLAST of jgi.p|Trimin1|348523 vs. uniprot
Match: A8IY04_CHLRE (Acireductone dioxygenase n=3 Tax=Chlamydomonas TaxID=3052 RepID=A8IY04_CHLRE) HSP 1 Score: 270 bits (689), Expect = 3.330e-89 Identity = 121/178 (67.98%), Postives = 145/178 (81.46%), Query Frame = 1
Query: 25 LEAWYMDDDTETDQREPHRKVPNEPCSFETLDSLGVLHWHLDADNHETDPALAAIRAERGYTYSDIITVSADTLPNYEAKIRSFYEEHMHTDEEIRYLLDGTGYFDVRDARDRWIRVAMGKGDMIVLPAGIYHRFTLDANNYTKAMRLFVGAPVWTPHNRPQDAHPVRRQYVEAFVAP 558
+EAWYMDD E DQR PH+ PN+PC L LGVL+W LDAD HETDP LAAIR Y+Y++I+ +S DTLP+YEAKI+SFY EH+H+D+EIRY+LDG+GYFDVRD DRWIR+A KGD++VLP GIYHRFTLD +NYTKAMRLFVGAPVWTPHNRPQ+ HP R +Y++ F AP
Sbjct: 24 IEAWYMDDSDE-DQRLPHKLSPNQPCPLSALRDLGVLYWKLDADKHETDPRLAAIRKVYNYSYTEIVNISKDTLPDYEAKIKSFYLEHIHSDDEIRYILDGSGYFDVRDHSDRWIRIATRKGDLLVLPEGIYHRFTLDTDNYTKAMRLFVGAPVWTPHNRPQEEHPSRAKYLDKFPAP 200
BLAST of jgi.p|Trimin1|348523 vs. uniprot
Match: A0A8J4LKI9_9CHLO (Acireductone dioxygenase n=2 Tax=Volvox TaxID=3066 RepID=A0A8J4LKI9_9CHLO) HSP 1 Score: 268 bits (686), Expect = 1.020e-88 Identity = 124/186 (66.67%), Postives = 147/186 (79.03%), Query Frame = 1
Query: 16 TMPLEAWYMDDDTETDQREPHRKVPNEPCSFETLDSLGVLHWHLDADNHETDPALAAIRAERGYTYSDIITVSADTLPNYEAKIRSFYEEHMHTDEEIRYLLDGTGYFDVRDARDRWIRVAMGKGDMIVLPAGIYHRFTLDANNYTKAMRLFVGAPVWTPHNRPQDAHPVRRQYVEAFVAPPAAAA 573
T +EAWYMDD T+ DQR PHR+ P+EPC L LGVL+W LDAD HETDP LAAIR Y+Y +I+ +S TLPNY+ KI+ FYEEH+H+D+EIR++LDG+GYFDVRD DRWIR+ KGD+IVLP GIYHRFTLD NNYTKAMRLFVGAPVWTP+NRPQ+ HP R +Y+E F A AAAA
Sbjct: 20 TAKIEAWYMDDSTD-DQRLPHRQNPDEPCPLSKLRELGVLYWRLDADKHETDPRLAAIRKVYNYSYMEIVNISPTTLPNYDEKIKMFYEEHIHSDDEIRFVLDGSGYFDVRDLDDRWIRIDCRKGDLIVLPEGIYHRFTLDTNNYTKAMRLFVGAPVWTPYNRPQEDHPSRSRYLEKFAAKEAAAA 204
BLAST of jgi.p|Trimin1|348523 vs. uniprot
Match: A0A2R6WWN5_MARPO (Acireductone dioxygenase n=3 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6WWN5_MARPO) HSP 1 Score: 268 bits (684), Expect = 1.520e-88 Identity = 123/176 (69.89%), Postives = 139/176 (78.98%), Query Frame = 1
Query: 25 LEAWYMDDDTETDQREPHRKVPNEPCSFETLDSLGVLHWHLDADNHETDPALAAIRAERGYTYSDIITVSADTLPNYEAKIRSFYEEHMHTDEEIRYLLDGTGYFDVRDARDRWIRVAMGKGDMIVLPAGIYHRFTLDANNYTKAMRLFVGAPVWTPHNRPQDAHPVRRQYVEAFV 552
+EAWYMDD TE DQR PHR VPN+P S L LGVL WHLDAD E DP L IR ER YTY DII VS +LP YE KI+SFYEEH+HTDEEIRY +DG+GYFDVRD+ DRWIR+ KGDMIVLPAG+YHRFTLD +NY KAMRLF+G PVWTP+NRPQD HP+RR Y+ F+
Sbjct: 14 VEAWYMDDSTE-DQRLPHRLVPNKPVSARDLADLGVLQWHLDADKFENDPELEKIRKERNYTYQDIINVSPTSLPEYERKIKSFYEEHIHTDEEIRYCIDGSGYFDVRDSADRWIRIWTKKGDMIVLPAGLYHRFTLDESNYIKAMRLFIGEPVWTPYNRPQDDHPIRRDYINNFL 188
BLAST of jgi.p|Trimin1|348523 vs. uniprot
Match: MTND3_PHYPA (Acireductone dioxygenase 3 n=2 Tax=Physcomitrium patens TaxID=3218 RepID=MTND3_PHYPA) HSP 1 Score: 268 bits (684), Expect = 1.800e-88 Identity = 121/178 (67.98%), Postives = 142/178 (79.78%), Query Frame = 1
Query: 25 LEAWYMDDDTETDQREPHRKVPNEPCSFETLDSLGVLHWHLDADNHETDPALAAIRAERGYTYSDIITVSADTLPNYEAKIRSFYEEHMHTDEEIRYLLDGTGYFDVRDARDRWIRVAMGKGDMIVLPAGIYHRFTLDANNYTKAMRLFVGAPVWTPHNRPQDAHPVRRQYVEAFVAP 558
+EAWYMDD E DQR PH + P E S + L LG+LHW LDADN+ETDP L IR ERGY+Y D + VS + LPNYE KI++FYEEH+HTDEEIRY LDG+GYFDVRD DRWIR+ + KGDMIVLPAG YHRF+LDANNY KAMRLFVG P+WTP+NRPQD HPVR++Y+ F+ P
Sbjct: 10 MEAWYMDDSAE-DQRMPHHRNPPEYVSLKKLAELGILHWVLDADNYETDPDLKHIRKERGYSYEDFVDVSPEALPNYETKIKNFYEEHIHTDEEIRYCLDGSGYFDVRDPEDRWIRIWVHKGDMIVLPAGCYHRFSLDANNYLKAMRLFVGEPIWTPYNRPQDEHPVRKEYINLFLKP 186
BLAST of jgi.p|Trimin1|348523 vs. uniprot
Match: A0A2V0NTF8_9CHLO (Acireductone dioxygenase n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NTF8_9CHLO) HSP 1 Score: 267 bits (682), Expect = 3.740e-88 Identity = 124/183 (67.76%), Postives = 144/183 (78.69%), Query Frame = 1
Query: 25 LEAWYMDDDTETDQREPHRKVPNEPCSFETLDSLGVLHWHLDADNHETDPALAAIRAERGYTYSDIITVSADTLPNYEAKIRSFYEEHMHTDEEIRYLLDGTGYFDVRDARDRWIRVAMGKGDMIVLPAGIYHRFTLDANNYTKAMRLFVGAPVWTPHNRPQDAHPVRRQYVEAFVAPPAAAA 573
LEAWYMDD ++TDQR PH++VPN+PC E L LGVL W LDAD E+DP LAAIR RGY+Y+++IT+S D LP YE KI+ FYEEH+H DEEIRY+LDGTGYFDVRD D WIR+ GKGDMIVLP GIYHRFTLD +Y KAMRLFVGAP+WTP NRPQ+ HP R +Y+ AF AAA
Sbjct: 23 LEAWYMDD-SQTDQRLPHKRVPNKPCPLEALRRLGVLSWRLDADRWESDPKLAAIRKVRGYSYTEVITISKDKLPGYEEKIKMFYEEHIHNDEEIRYILDGTGYFDVRDLDDEWIRINCGKGDMIVLPEGIYHRFTLDERDYIKAMRLFVGAPIWTPFNRPQEEHPSRAKYLAAFGGAAVAAA 204
BLAST of jgi.p|Trimin1|348523 vs. uniprot
Match: D7G4W6_ECTSI (Acireductone dioxygenase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4W6_ECTSI) HSP 1 Score: 266 bits (679), Expect = 5.810e-88 Identity = 121/178 (67.98%), Postives = 137/178 (76.97%), Query Frame = 1
Query: 19 MPLEAWYMDDDTETDQREPHRKVPNEPCSFETLDSLGVLHWHLDADNHETDPALAAIRAERGYTYSDIITVSADTLPNYEAKIRSFYEEHMHTDEEIRYLLDGTGYFDVRDARDRWIRVAMGKGDMIVLPAGIYHRFTLDANNYTKAMRLFVGAPVWTPHNRPQDAHPVRRQYVEAFV 552
M +EAWYMD+D DQR PHR+ PN C L SLGVLHW LDAD H DPAL IR +RGY+Y DIITVS D L NYE KI+SF+EEHMH+DEEIRY+L+G+GYFDVR +RW+R+ M KGDMI LPAGIYHRFTLD NY KAMRLFVG PVWTP NRPQD HPVR+ Y+ F
Sbjct: 1 MAIEAWYMDEDKAADQRLPHRQSPNVACGTAELQSLGVLHWELDADKHADDPALEKIRQDRGYSYQDIITVSPDKLANYEDKIKSFFEEHMHSDEEIRYILEGSGYFDVRAKDERWVRIKMSKGDMITLPAGIYHRFTLDDTNYIKAMRLFVGEPVWTPLNRPQDDHPVRKDYLANFA 178
BLAST of jgi.p|Trimin1|348523 vs. uniprot
Match: W1NV53_AMBTC (Acireductone dioxygenase n=1 Tax=Amborella trichopoda TaxID=13333 RepID=W1NV53_AMBTC) HSP 1 Score: 265 bits (677), Expect = 1.700e-87 Identity = 122/188 (64.89%), Postives = 149/188 (79.26%), Query Frame = 1
Query: 25 LEAWYMDDDTETDQREPHRKVPNEPCSFETLDSLGVLHWHLDADNHETDPALAAIRAERGYTYSDIITVSADTLPNYEAKIRSFYEEHMHTDEEIRYLLDGTGYFDVRDARDRWIRVAMGKGDMIVLPAGIYHRFTLDANNYTKAMRLFVGAPVWTPHNRPQDAHPVRRQYVEAFVAPPAAAAAAEVH 588
++AWYM++ T+ DQR PH P E S + L LGVL+WHLDADN+ETD IR RGYTYSD+IT D LPNYE K++SFYEEH+HTDEEIR+LL+G+GYFDVRD DRWIR+ + KGDMIVLPAGIYHRFT+D++N+TKA+RLFVG PVWTP+NRPQD HP+R+QYVEAF+ + A E H
Sbjct: 11 IQAWYMNE-TDEDQRLPHHCDPPEYVSLDKLAELGVLYWHLDADNYETDEEFNKIRESRGYTYSDLITCCPDKLPNYECKLKSFYEEHIHTDEEIRFLLEGSGYFDVRDNNDRWIRIWVKKGDMIVLPAGIYHRFTMDSDNHTKALRLFVGEPVWTPYNRPQDDHPIRKQYVEAFIEKDQGSHAVEAH 197
BLAST of jgi.p|Trimin1|348523 vs. uniprot
Match: MTND2_PHYPA (Acireductone dioxygenase 2 n=2 Tax=Physcomitrium patens TaxID=3218 RepID=MTND2_PHYPA) HSP 1 Score: 265 bits (676), Expect = 2.260e-87 Identity = 121/179 (67.60%), Postives = 143/179 (79.89%), Query Frame = 1
Query: 22 PLEAWYMDDDTETDQREPHRKVPNEPCSFETLDSLGVLHWHLDADNHETDPALAAIRAERGYTYSDIITVSADTLPNYEAKIRSFYEEHMHTDEEIRYLLDGTGYFDVRDARDRWIRVAMGKGDMIVLPAGIYHRFTLDANNYTKAMRLFVGAPVWTPHNRPQDAHPVRRQYVEAFVAP 558
PLEAWYM+D +E DQR PH + P E + E L +LGV+HW LDADNHETDP L+ IR +RGY Y+D+ITV + LP+YEAKI+SFYEEH+H DEEIRY LDG+GYFDVRD D WIR+ + KGDMIVLPAG YHRFTLD +NY AMRLFVG P+WTP+NRPQD HPVR+ YV F+ P
Sbjct: 7 PLEAWYMND-SEEDQRLPHHRNPPEYVTLEKLAALGVIHWVLDADNHETDPELSIIRKDRGYNYTDVITVCPEMLPSYEAKIKSFYEEHIHMDEEIRYCLDGSGYFDVRDPEDHWIRIWVRKGDMIVLPAGCYHRFTLDEHNYIMAMRLFVGEPIWTPYNRPQDEHPVRKGYVHQFLQP 184
BLAST of jgi.p|Trimin1|348523 vs. uniprot
Match: A0A150GU06_GONPE (Acireductone dioxygenase n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GU06_GONPE) HSP 1 Score: 264 bits (674), Expect = 6.380e-87 Identity = 122/189 (64.55%), Postives = 147/189 (77.78%), Query Frame = 1
Query: 10 SNTMPLEAWYMDDDTETDQREPHRKVPNEPCSFETLDSLGVLHWHLDADNHETDPALAAIRAERGYTYSDIITVSADTLPNYEAKIRSFYEEHMHTDEEIRYLLDGTGYFDVRDARDRWIRVAMGKGDMIVLPAGIYHRFTLDANNYTKAMRLFVGAPVWTPHNRPQDAHPVRRQYVEAFVAPPAAAAA 576
+ T +EAWYMD TE DQR PHR PN+PCS L LGVL+W LDAD +E DP LAAIR Y+Y++I+ +S TLP YE KI+ FYEEH+H+D+EIRY+LDG+GYFDVRD DRWIR+ KGD+IVLP GIYHRFTL+ NNYTKAMRLFVGAPVWTPHNRPQ+ HP RR+Y++ F A+A+A
Sbjct: 18 AETASIEAWYMDSSTE-DQRLPHRLEPNQPCSLAKLRELGVLYWKLDADKYEDDPRLAAIRKVYNYSYTEIVNISPTTLPGYEDKIKMFYEEHIHSDDEIRYVLDGSGYFDVRDFEDRWIRIDCQKGDLIVLPEGIYHRFTLNTNNYTKAMRLFVGAPVWTPHNRPQEEHPSRRKYLDKFATGVASASA 205 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348523 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_6728 ID=mRNA_6728|Name=jgi.p|Trimin1|348523|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=632bp|location=Sequence derived from alignment at Contig_25:1209177..1210435+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. TCCTGATCCAGCAATACAATGCCTTTGGAAGCTTGGTACATGGACGATGAback to top protein sequence of jgi.p|Trimin1|348523 >Trimin1|348523|estExt_Genemark1.C_Ctg_250151 ID=Trimin1|348523|estExt_Genemark1.C_Ctg_250151|Name=jgi.p|Trimin1|348523|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=191bp MPLEAWYMDDDTETDQREPHRKVPNEPCSFETLDSLGVLHWHLDADNHETback to top mRNA from alignment at Contig_25:1209177..1210435+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_6728 ID=mRNA_6728|Name=jgi.p|Trimin1|348523|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1259bp|location=Sequence derived from alignment at Contig_25:1209177..1210435+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_25:1209177..1210435+ >mRNA_6728 ID=mRNA_6728|Name=jgi.p|Trimin1|348523|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=573bp|location=Sequence derived from alignment at Contig_25:1209177..1210435+ (Tribonema minus UTEX_B_3156 )back to top |