mRNA_6722 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|137199
Unique NamemRNA_6722
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|137199 vs. uniprot
Match: A0A835YZD8_9STRA (EDR2_C domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZD8_9STRA)

HSP 1 Score: 209 bits (533), Expect = 7.260e-69
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 1 
Query:    1 RNRCFKLLPLVREGPWVVKTATGSTPTLLGRKLTQRYFSGPGYTEVCIDVGSSAIASRIVSVCMGAARALTIDVGVTLEGRCDDELPERLLGCLTICHLD 300
            RNRCFKLLPLVREGPWVVKTATGSTPTLLGRKLTQRYFSGPGYTEVCIDVGSSAIASRIVSVCMGAARALTIDVGVTLEGRCDDELPERLLGCLTICHLD
Sbjct:    1 RNRCFKLLPLVREGPWVVKTATGSTPTLLGRKLTQRYFSGPGYTEVCIDVGSSAIASRIVSVCMGAARALTIDVGVTLEGRCDDELPERLLGCLTICHLD 100
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BLAST of jgi.p|Trimin1|137199 vs. uniprot
Match: D7G1Z5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1Z5_ECTSI)

HSP 1 Score: 129 bits (323), Expect = 1.100e-32
Identity = 56/100 (56.00%), Postives = 79/100 (79.00%), Query Frame = 1 
Query:    1 RNRCFKLLPLVREGPWVVKTATGSTPTLLGRKLTQRYFSGPGYTEVCIDVGSSAIASRIVSVCMGAARALTIDVGVTLEGRCDDELPERLLGCLTICHLD 300
            RN+ FKL+P V  GP++V+ A G+ P LLGRK++QRYF GPGY E  +DVGSS IA +IVS+C G A+ALT+++G+ LEGRCD+ELPE ++G + + ++D
Sbjct:  524 RNQRFKLIPSVVSGPFIVRKAVGNKPALLGRKVSQRYFRGPGYVETDVDVGSSMIAEKIVSLCRGYAKALTVELGICLEGRCDEELPETVMGVIRLVNVD 623
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BLAST of jgi.p|Trimin1|137199 vs. uniprot
Match: E1ZD95_CHLVA (EDR2_C domain-containing protein (Fragment) n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZD95_CHLVA)

HSP 1 Score: 111 bits (277), Expect = 9.530e-30
Identity = 48/100 (48.00%), Postives = 71/100 (71.00%), Query Frame = 1 
Query:    1 RNRCFKLLPLVREGPWVVKTATGSTPTLLGRKLTQRYFSGPGYTEVCIDVGSSAIASRIVSVCMGAARALTIDVGVTLEGRCDDELPERLLGCLTICHLD 300
            RN+ FKL+P +  G W+VK + G+TP LLG+KLT RYF GP Y EV +D+ S+ +A+ + S+ +GA  +L +D+   +EG+ +DELPERL+G +   HLD
Sbjct:    4 RNKKFKLIPRIVRGSWIVKQSVGTTPVLLGQKLTTRYFRGPNYFEVDVDITSNTVANSVTSLVVGAITSLVVDLAPLVEGQAEDELPERLIGSVRFEHLD 103
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BLAST of jgi.p|Trimin1|137199 vs. uniprot
Match: A0A8J9RG41_9CHLO (Probable translocator protein at N-terminal half n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9RG41_9CHLO)

HSP 1 Score: 117 bits (292), Expect = 2.230e-28
Identity = 56/101 (55.45%), Postives = 71/101 (70.30%), Query Frame = 1 
Query:    1 RNRCFKLLPLVREGPWVVKTATG-STPTLLGRKLTQRYFSGPGYTEVCIDVGSSAIASRIVSVCMGAARALTIDVGVTLEGRCDDELPERLLGCLTICHLD 300
            R+  FK++P + EG WVVK A G +TP LLGRKLT +YF GP Y EV +DVGSS  A+ +V +  GA ++L ID+ V LEG C +ELPERLLG   + HLD
Sbjct:  657 RHGAFKIIPRITEGSWVVKQAVGQNTPVLLGRKLTTKYFRGPNYIEVDVDVGSSRSAANVVGLVQGALKSLVIDLAVLLEGHCTEELPERLLGTCRLEHLD 757
[Close]
BLAST of jgi.p|Trimin1|137199 vs. uniprot
Match: A0A067BR04_SAPPC (EDR2_C domain-containing protein n=2 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BR04_SAPPC)

HSP 1 Score: 113 bits (282), Expect = 3.170e-28
Identity = 51/96 (53.12%), Postives = 66/96 (68.75%), Query Frame = 1 
Query:   13 FKLLPLVREGPWVVKTATGSTPTLLGRKLTQRYFSGPGYTEVCIDVGSSAIASRIVSVCMGAARALTIDVGVTLEGRCDDELPERLLGCLTICHLD 300
            FKL+P + +GPW++K A    P + G KLTQRYF G  Y EV +D+GSSAIAS IVS+C G A  L +D+ +TL+G  D ELPER+ G +   HLD
Sbjct:  215 FKLVPTIVDGPWLIKAAVPQKPAITGTKLTQRYFVGSNYVEVDMDIGSSAIASNIVSLCRGYAERLVVDLSLTLQGNSDVELPERIFGSVRFSHLD 310
[Close]
BLAST of jgi.p|Trimin1|137199 vs. uniprot
Match: A0A7S2CMY1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CMY1_9STRA)

HSP 1 Score: 115 bits (288), Expect = 3.780e-28
Identity = 51/92 (55.43%), Postives = 71/92 (77.17%), Query Frame = 1 
Query:    1 RNRCFKLLPLVREGPWVVKTATGSTPTLLGRKLTQRYFSGPGYTEVCIDVGSSAIASRIVSVCMGAARALTIDVGVTLEGRCDDELPERLLG 276
            RN+ FKL+P + EGP++VK A G+ P LLG+KLTQRYF G  Y E  + VGSSAIA+++V +C G  +ALT+++G+ LEGR + ELPE+L+G
Sbjct:  374 RNQRFKLIPAITEGPFLVKQAVGAKPALLGQKLTQRYFRGEHYVETDVHVGSSAIANQVVGLCRGYCKALTVEIGIVLEGRSEAELPEKLIG 465
[Close]
BLAST of jgi.p|Trimin1|137199 vs. uniprot
Match: I0YV38_COCSC (DUF1336-domain-containing protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YV38_COCSC)

HSP 1 Score: 115 bits (289), Expect = 5.660e-28
Identity = 51/100 (51.00%), Postives = 70/100 (70.00%), Query Frame = 1 
Query:    1 RNRCFKLLPLVREGPWVVKTATGSTPTLLGRKLTQRYFSGPGYTEVCIDVGSSAIASRIVSVCMGAARALTIDVGVTLEGRCDDELPERLLGCLTICHLD 300
            RN  FKL+P V +G W++K + G+TP LLG KLT +YF G GY EV IDVGSS++A+ +V +  GA ++L +D+G+ LEG   DELPE LLG +    +D
Sbjct:  641 RNATFKLIPRVTQGSWIIKQSVGTTPCLLGNKLTAKYFQGDGYVEVDIDVGSSSVAATVVGLVQGATKSLVVDMGIVLEGHTRDELPESLLGTVRFSKVD 740
[Close]
BLAST of jgi.p|Trimin1|137199 vs. uniprot
Match: A0A5J4Y7R5_9CHLO (EDR2_C domain-containing protein n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4Y7R5_9CHLO)

HSP 1 Score: 115 bits (287), Expect = 8.430e-28
Identity = 53/100 (53.00%), Postives = 70/100 (70.00%), Query Frame = 1 
Query:    1 RNRCFKLLPLVREGPWVVKTATGSTPTLLGRKLTQRYFSGPGYTEVCIDVGSSAIASRIVSVCMGAARALTIDVGVTLEGRCDDELPERLLGCLTICHLD 300
            R+  FKL+P V +G WV++ A GSTP LLG+KLT +YF GP Y EV IDVGSS  A+ +V +  GA + L ID+ +T+EG   DELPE LLG + + +LD
Sbjct:  473 RHNTFKLIPRVTKGSWVIRNAVGSTPVLLGKKLTTKYFRGPNYFEVDIDVGSSKSAASVVGLVQGALKGLVIDMAITMEGHSKDELPEALLGAVRLQNLD 572
[Close]
BLAST of jgi.p|Trimin1|137199 vs. uniprot
Match: T0RWT2_SAPDV (EDR2_C domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0RWT2_SAPDV)

HSP 1 Score: 111 bits (278), Expect = 1.300e-27
Identity = 50/96 (52.08%), Postives = 66/96 (68.75%), Query Frame = 1 
Query:   13 FKLLPLVREGPWVVKTATGSTPTLLGRKLTQRYFSGPGYTEVCIDVGSSAIASRIVSVCMGAARALTIDVGVTLEGRCDDELPERLLGCLTICHLD 300
            FKL+P + +GPW++K A    P + G KLTQRYF G  Y EV +D+GSSAIAS IVS+C G A  L +D+ +TL+G  + ELPER+ G +   HLD
Sbjct:  218 FKLVPTIVDGPWLIKAAVPQKPAITGSKLTQRYFVGRNYVEVDMDIGSSAIASNIVSLCRGYAERLVVDLSLTLQGNSEAELPERIFGSVRFSHLD 313
[Close]
BLAST of jgi.p|Trimin1|137199 vs. uniprot
Match: A0A8J9RN18_9CHLO (Protein ENHANCED DISEASE RESISTANCE 2 n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9RN18_9CHLO)

HSP 1 Score: 114 bits (285), Expect = 1.980e-27
Identity = 50/100 (50.00%), Postives = 70/100 (70.00%), Query Frame = 1 
Query:    1 RNRCFKLLPLVREGPWVVKTATGSTPTLLGRKLTQRYFSGPGYTEVCIDVGSSAIASRIVSVCMGAARALTIDVGVTLEGRCDDELPERLLGCLTICHLD 300
            R+  FKL+P V +G W++K + G+TP LLG KLT +YF G GY EV IDVGSS++A+ +V +  GA ++L +D+G+ LEG   DELPE LLG +    +D
Sbjct:  680 RDNTFKLIPRVTQGSWIIKQSVGTTPCLLGNKLTAKYFQGDGYMEVDIDVGSSSVAATVVGLVQGATKSLVVDMGIVLEGHTRDELPESLLGTVRFSRVD 779
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|137199 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YZD8_9STRA7.260e-69100.00EDR2_C domain-containing protein (Fragment) n=1 Ta... [more]
D7G1Z5_ECTSI1.100e-3256.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
E1ZD95_CHLVA9.530e-3048.00EDR2_C domain-containing protein (Fragment) n=1 Ta... [more]
A0A8J9RG41_9CHLO2.230e-2855.45Probable translocator protein at N-terminal half n... [more]
A0A067BR04_SAPPC3.170e-2853.13EDR2_C domain-containing protein n=2 Tax=Saprolegn... [more]
A0A7S2CMY1_9STRA3.780e-2855.43Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
I0YV38_COCSC5.660e-2851.00DUF1336-domain-containing protein n=1 Tax=Coccomyx... [more]
A0A5J4Y7R5_9CHLO8.430e-2853.00EDR2_C domain-containing protein n=1 Tax=Trebouxia... [more]
T0RWT2_SAPDV1.300e-2752.08EDR2_C domain-containing protein n=1 Tax=Saprolegn... [more]
A0A8J9RN18_9CHLO1.980e-2750.00Protein ENHANCED DISEASE RESISTANCE 2 n=1 Tax=Cocc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_25contigContig_25:1154035..1154889 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|137199|gw1.25.36.1
DescriptionProtein of unknown function (DUF1336)
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGs28KK0@1|root,2QT1F@2759|Eukaryota
Evalue1.81e-33
Seed ortholog2880.D7G1Z5
Hectar predicted targeting categoryother localisation
TranscriptId137521
TrackFilteredModels1
ProteinId137199
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|137199gene_6722Tribonema minus UTEX_B_3156 geneContig_25 1154035..1154889 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6722_1exon_6722_1Tribonema minus UTEX_B_3156 exonContig_25 1154035..1154139 +
exon_6722_2exon_6722_2Tribonema minus UTEX_B_3156 exonContig_25 1154695..1154889 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6722CDS_6722Tribonema minus UTEX_B_3156 CDSContig_25 1154035..1154139 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|137199Trimin1|137199|gw1.25.36.1Tribonema minus UTEX_B_3156 polypeptideContig_25 1154035..1154889 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6722 ID=mRNA_6722|Name=jgi.p|Trimin1|137199|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=300bp|location=Sequence derived from alignment at Contig_25:1154035..1154889+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CGCAACCGCTGCTTCAAGCTGCTGCCGCTCGTGCGCGAGGGGCCGTGGGT
GGTGAAGACGGCGACGGGCAGCACGCCGACGCTGCTCGGGCGCAAGCTCA
CGCAGCGCTACTTCTCCGGCCCCGGCTACACGGAGGTGTGCATCGACGTC
GGCTCCAGCGCGATCGCGTCGCGCATCGTGTCGGTGTGCATGGGCGCGGC
GCGCGCGCTCACGATAGACGTCGGCGTCACGCTCGAGGGCCGCTGCGACG
ACGAGCTGCCGGAGCGCCTGCTGGGCTGCCTCACCATCTGCCACCTCGAC
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protein sequence of jgi.p|Trimin1|137199

>Trimin1|137199|gw1.25.36.1 ID=Trimin1|137199|gw1.25.36.1|Name=jgi.p|Trimin1|137199|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=100bp
RNRCFKLLPLVREGPWVVKTATGSTPTLLGRKLTQRYFSGPGYTEVCIDV
GSSAIASRIVSVCMGAARALTIDVGVTLEGRCDDELPERLLGCLTICHLD
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mRNA from alignment at Contig_25:1154035..1154889+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6722 ID=mRNA_6722|Name=jgi.p|Trimin1|137199|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=855bp|location=Sequence derived from alignment at Contig_25:1154035..1154889+ (Tribonema minus UTEX_B_3156 )
CGCAACCGCTGCTTCAAGCTGCTGCCGCTCGTGCGCGAGGGGCCGTGGGT
GGTGAAGACGGCGACGGGCAGCACGCCGACGCTGCTCGGGCGCAAGCTCA
CGCAGGTGAAGTTTGATTTTGGAATGAGATAAAATTGGAGTTGGGCAGTG
CCTTGAGCGTAAGCTTACGCAGGTGAAGTCCACCAGGTTTTTCAAAGATG
CGCGTTTTGAAGTTTGTGGTGTGTGTCGATTCTTGCAGGGTTCCGTCTAC
GGCACTTGCTTCGGAGAGATGCTCAGCGTGCCGCTGATTGCGGGTTCAGA
GCGCATGACGAGGCGATGGCAGAACTGCTCACGTGATAGGTGCTGCATGC
GGCGTATGCTGCCTGCGCACTAGCTCTAGCCAGTTGGCACTTCACTAAAG
CATTGCCATCCGTTGTCGCGCCTTTGCAACTGTTTTCCTTCAAAAGTCGA
TTGCATGAAGCTCACCATGCAGCTCAAAGATTGCATCTGTCACCCTTTGA
CATCTGTCGCACACGGTGCGGCTGTGTGCTTGCAAAGCCACACAGGCACA
TCTCAGCACGCCTGAGTACTGCGAATGCTGATGCTGGTGTATTGTACTTT
AAAGTATGTATGATCATCATACCCCCTCCCCCTCCCCCCTTAACCCCCCC
GACCGCGCAGCGCTACTTCTCCGGCCCCGGCTACACGGAGGTGTGCATCG
ACGTCGGCTCCAGCGCGATCGCGTCGCGCATCGTGTCGGTGTGCATGGGC
GCGGCGCGCGCGCTCACGATAGACGTCGGCGTCACGCTCGAGGGCCGCTG
CGACGACGAGCTGCCGGAGCGCCTGCTGGGCTGCCTCACCATCTGCCACC
TCGAC
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Coding sequence (CDS) from alignment at Contig_25:1154035..1154889+

>mRNA_6722 ID=mRNA_6722|Name=jgi.p|Trimin1|137199|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=300bp|location=Sequence derived from alignment at Contig_25:1154035..1154889+ (Tribonema minus UTEX_B_3156 )
CGCAACCGCTGCTTCAAGCTGCTGCCGCTCGTGCGCGAGGGGCCGTGGGT
GGTGAAGACGGCGACGGGCAGCACGCCGACGCTGCTCGGGCGCAAGCTCA
CGCAGCGCTACTTCTCCGGCCCCGGCTACACGGAGGTGTGCATCGACGTC
GGCTCCAGCGCGATCGCGTCGCGCATCGTGTCGGTGTGCATGGGCGCGGC
GCGCGCGCTCACGATAGACGTCGGCGTCACGCTCGAGGGCCGCTGCGACG
ACGAGCTGCCGGAGCGCCTGCTGGGCTGCCTCACCATCTGCCACCTCGAC
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