mRNA_6704 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|146118
Unique NamemRNA_6704
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|146118 vs. uniprot
Match: A0A835Z6Y2_9STRA (USP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6Y2_9STRA)

HSP 1 Score: 473 bits (1217), Expect = 7.010e-169
Identity = 231/231 (100.00%), Postives = 231/231 (100.00%), Query Frame = 1 
Query:    1 MVGLLNQGATCYMNSLLQTLYHLRQLRKAVYDMPSAAASDSEGGVAFALQKTFYMLQTSDHPVSTKHLTQSFGWDTYEAYMQQDVQELNRVLMDKLETIMKGTPVDGTVGALFEGSTRAYIRCTDVPYESRRDETFHDIQLDVKGCKTIHDSFARYIEEEVLDGEDKYDAGPVHGKQKAKKGVRFLRYPPVLTIHLKRFEYDMASGNMVKVNDRYEFPFQLDVDPYLAEDA 693
            MVGLLNQGATCYMNSLLQTLYHLRQLRKAVYDMPSAAASDSEGGVAFALQKTFYMLQTSDHPVSTKHLTQSFGWDTYEAYMQQDVQELNRVLMDKLETIMKGTPVDGTVGALFEGSTRAYIRCTDVPYESRRDETFHDIQLDVKGCKTIHDSFARYIEEEVLDGEDKYDAGPVHGKQKAKKGVRFLRYPPVLTIHLKRFEYDMASGNMVKVNDRYEFPFQLDVDPYLAEDA
Sbjct:    1 MVGLLNQGATCYMNSLLQTLYHLRQLRKAVYDMPSAAASDSEGGVAFALQKTFYMLQTSDHPVSTKHLTQSFGWDTYEAYMQQDVQELNRVLMDKLETIMKGTPVDGTVGALFEGSTRAYIRCTDVPYESRRDETFHDIQLDVKGCKTIHDSFARYIEEEVLDGEDKYDAGPVHGKQKAKKGVRFLRYPPVLTIHLKRFEYDMASGNMVKVNDRYEFPFQLDVDPYLAEDA 231
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BLAST of jgi.p|Trimin1|146118 vs. uniprot
Match: A0A6H5KU31_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU31_9PHAE)

HSP 1 Score: 327 bits (837), Expect = 1.800e-99
Identity = 156/231 (67.53%), Postives = 189/231 (81.82%), Query Frame = 1 
Query:    1 MVGLLNQGATCYMNSLLQTLYHLRQLRKAVYDMPSAAASDSEGGVAFALQKTFYMLQTSDHPVSTKHLTQSFGWDTYEAYMQQDVQELNRVLMDKLETIMKGTPVDGTVGALFEGSTRAYIRCTDVPYESRRDETFHDIQLDVKGCKTIHDSFARYIEEEVLDGEDKYDAGPVHGKQKAKKGVRFLRYPPVLTIHLKRFEYDMASGNMVKVNDRYEFPFQLDVDPYLAEDA 693
            MVGL NQGATCYMNSLLQTLYH+  LR+AVYDMP+    +S   +A ALQ+ FY LQTS+  V TK LT+SFGWD Y+++ QQDVQELNRVL D LE  MKGTPV+GT+  LFEG+ R+YI+C DV + S R ET++DIQLDVKGCK IH+SFA+Y+EEEVLDG++KYDAG  HG+Q AKKGVRFLR+PPVL +HLKRFEYDM +G MVKVNDR+ FP ++D+D YL E+A
Sbjct:  415 MVGLKNQGATCYMNSLLQTLYHVLSLRRAVYDMPTEE-ENSVTSMALALQRVFYRLQTSNKSVGTKELTKSFGWDAYDSFTQQDVQELNRVLCDHLEDKMKGTPVEGTIQRLFEGTIRSYIQCVDVDFTSARVETYYDIQLDVKGCKDIHESFAKYVEEEVLDGDNKYDAGEQHGRQVAKKGVRFLRFPPVLNVHLKRFEYDMTTGTMVKVNDRFSFPREMDIDQYLGEEA 644
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BLAST of jgi.p|Trimin1|146118 vs. uniprot
Match: D8LL31_ECTSI (USP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL31_ECTSI)

HSP 1 Score: 325 bits (832), Expect = 2.220e-99
Identity = 155/231 (67.10%), Postives = 188/231 (81.39%), Query Frame = 1 
Query:    1 MVGLLNQGATCYMNSLLQTLYHLRQLRKAVYDMPSAAASDSEGGVAFALQKTFYMLQTSDHPVSTKHLTQSFGWDTYEAYMQQDVQELNRVLMDKLETIMKGTPVDGTVGALFEGSTRAYIRCTDVPYESRRDETFHDIQLDVKGCKTIHDSFARYIEEEVLDGEDKYDAGPVHGKQKAKKGVRFLRYPPVLTIHLKRFEYDMASGNMVKVNDRYEFPFQLDVDPYLAEDA 693
            MVGL NQGATCYMNSLLQTLYH+  LR+AVYDMP+    +S   +A ALQ+ FY LQTS   V TK LT+SFGWD Y+++ QQDVQELNRVL D LE  MKGTPV+GT+  LFEG+ R+YI+C DV + S R ET++DIQLDVKGCK IH+SFA+Y+EEEVLDG++KYDAG  HG+Q AKKGVRFLR+PPVL +HLKRFEY+M +G MVKVNDR+ FP ++D+D YL E+A
Sbjct:  371 MVGLKNQGATCYMNSLLQTLYHVLSLRRAVYDMPTEE-ENSVTSMALALQRVFYRLQTSSKSVGTKELTKSFGWDAYDSFTQQDVQELNRVLCDHLEDKMKGTPVEGTIQRLFEGTIRSYIQCVDVDFTSARVETYYDIQLDVKGCKDIHESFAKYVEEEVLDGDNKYDAGEQHGRQVAKKGVRFLRFPPVLNVHLKRFEYEMTTGTMVKVNDRFSFPREMDIDQYLGEEA 600
[Close]
BLAST of jgi.p|Trimin1|146118 vs. uniprot
Match: A0A7S2B0F0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B0F0_9STRA)

HSP 1 Score: 293 bits (750), Expect = 4.380e-97
Identity = 145/231 (62.77%), Postives = 189/231 (81.82%), Query Frame = 1 
Query:    1 MVGLLNQGATCYMNSLLQTLYHLRQLRKAVYDMPSAAASDSEGGVAFALQKTFYMLQTSDHPVSTKHLTQSFGWDTYEAYMQQDVQELNRVLMDKLETIMKGTPVDGTVGALFEGSTRAYIRCTDVPYESRRDETFHDIQLDVKGCKTIHDSFARYIEEEVLDGEDKYDAGPVHGKQKAKKGVRFLRYPPVLTIHLKRFEYDMASGNMVKVNDRYEFPFQLDVDPYLAEDA 693
            +VGL NQGATCYMNSLLQTL+HLR+LR AVY MP+   +D+E  +A ALQ+ FY LQTSD  V TK LT+SFGW T +++MQQDVQELNRVL DKLE  MKGT  +GT+  LFEG+ R++IRC ++ +ES+R+E+++DIQLDVKGCKTI DSFA+Y+E E LDG+++Y+A   HGKQ A+KGV+FLR+PPVL I LKRFE+DM + NMVK+ND++EF   LD+D ++A+D+
Sbjct:   18 LVGLKNQGATCYMNSLLQTLFHLRELRWAVYSMPTE--NDTET-MALALQRVFYRLQTSDEEVGTKELTKSFGWATVDSFMQQDVQELNRVLCDKLEEKMKGTCAEGTIKQLFEGTIRSFIRCKNIEFESKREESYYDIQLDVKGCKTIMDSFAKYVETEDLDGDNQYEAEG-HGKQDAEKGVKFLRFPPVLNIQLKRFEFDMQTLNMVKINDKFEFTQTLDLDRFVADDS 244
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BLAST of jgi.p|Trimin1|146118 vs. uniprot
Match: A0A446U041_TRITD (USP domain-containing protein n=2 Tax=Triticum turgidum subsp. durum TaxID=4567 RepID=A0A446U041_TRITD)

HSP 1 Score: 276 bits (705), Expect = 1.090e-89
Identity = 139/234 (59.40%), Postives = 169/234 (72.22%), Query Frame = 1 
Query:    4 VGLLNQGATCYMNSLLQTLYHLRQLRKAVYDMPSAAASDSEGGVAFALQKTFYMLQTSDHPVSTKHLTQSFGWDTYEAYMQQDVQELNRVLMDKLETIMKGTPVDGTVGALFEGSTRAYIRCTDVPYESRRDETFHDIQLDVKGCKTIHDSFARYIEEEVLDGEDKYDAGPVHGKQKAKKGVRFLRYPPVLTIHLKRFEYDMASGNMVKVNDRYEFPFQLDVDP----YLAEDA 693
            VGL NQGATCYMNSLLQTLYH+   RKAVY MP+       G +  ALQ  FY LQ SD+ V+TK LT+SFGWDTY+++MQ DVQELNRVL +KLE  MKGT V+GT+  LFEG    YI C +V Y+S R E+F+D+QLDVKGC+ ++ SF +Y+E E L+G++KY A   HG Q A+KGV FL +PPVL + LKRFEYD     MVK+NDRYEFP QLD+D     YL  DA
Sbjct:   16 VGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDMPSGSIPLALQSLFYKLQYSDNSVATKELTKSFGWDTYDSFMQHDVQELNRVLCEKLEDKMKGTVVEGTIEQLFEGHHINYIECINVDYKSNRKESFYDLQLDVKGCRDVYASFDKYVEVERLEGDNKYQAEQ-HGLQDARKGVLFLDFPPVLQLQLKRFEYDYMRDTMVKINDRYEFPLQLDLDKDDGKYLTPDA 248
[Close]
BLAST of jgi.p|Trimin1|146118 vs. uniprot
Match: A0A446SUA3_TRITD (Uncharacterized protein n=1 Tax=Triticum turgidum subsp. durum TaxID=4567 RepID=A0A446SUA3_TRITD)

HSP 1 Score: 275 bits (702), Expect = 8.270e-89
Identity = 139/234 (59.40%), Postives = 168/234 (71.79%), Query Frame = 1 
Query:    4 VGLLNQGATCYMNSLLQTLYHLRQLRKAVYDMPSAAASDSEGGVAFALQKTFYMLQTSDHPVSTKHLTQSFGWDTYEAYMQQDVQELNRVLMDKLETIMKGTPVDGTVGALFEGSTRAYIRCTDVPYESRRDETFHDIQLDVKGCKTIHDSFARYIEEEVLDGEDKYDAGPVHGKQKAKKGVRFLRYPPVLTIHLKRFEYDMASGNMVKVNDRYEFPFQLDVDP----YLAEDA 693
            VGL NQGATCYMNSLLQTLYH+   RKAVY MP+       G +  ALQ  FY LQ SD+ V+TK LT+SFGWDTY+++MQ DVQELNRVL +KLE  MKGT V+GT+  LFEG    YI C +V Y+S R E+F+D+QLDVKGC  ++ SF +Y+E E L+G++KY A   HG Q A+KGV FL +PPVL + LKRFEYD     MVK+NDRYEFP QLD+D     YL  DA
Sbjct:  100 VGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDMPSGSIPLALQSLFYKLQYSDNSVATKELTKSFGWDTYDSFMQHDVQELNRVLCEKLEDKMKGTVVEGTIEQLFEGHHINYIECINVDYKSNRKESFYDLQLDVKGCHDVYASFDKYVEVERLEGDNKYQAEQ-HGLQDARKGVLFLDFPPVLQLQLKRFEYDYMRDTMVKINDRYEFPLQLDLDKDDGKYLTPDA 332
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BLAST of jgi.p|Trimin1|146118 vs. uniprot
Match: UPI0011D1A4F7 (ubiquitin carboxyl-terminal hydrolase 13-like isoform X1 n=4 Tax=Syzygium oleosum TaxID=219896 RepID=UPI0011D1A4F7)

HSP 1 Score: 277 bits (709), Expect = 1.300e-88
Identity = 139/234 (59.40%), Postives = 169/234 (72.22%), Query Frame = 1 
Query:    4 VGLLNQGATCYMNSLLQTLYHLRQLRKAVYDMPSAAASDSEGGVAFALQKTFYMLQTSDHPVSTKHLTQSFGWDTYEAYMQQDVQELNRVLMDKLETIMKGTPVDGTVGALFEGSTRAYIRCTDVPYESRRDETFHDIQLDVKGCKTIHDSFARYIEEEVLDGEDKYDAGPVHGKQKAKKGVRFLRYPPVLTIHLKRFEYDMASGNMVKVNDRYEFPFQLDVD----PYLAEDA 693
            VGL NQGATCYMNSLLQTLYH+   RKAVY MP+       G +  ALQ  FY LQ  D  V+TK LT+SFGWDTY+++MQ DVQELNRVL +KLE  MKGT V+GT+  LFEG    YI C +V Y+S R E+F+D+QLDVKGC+ ++ SF +Y+E E L+G++KY A   HG Q AKKGV F+ +PPVL +HLKRFEYD     MVK+NDRYEFP QLD+D     YL+ DA
Sbjct:  199 VGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDMPSGSIPLALQSLFYKLQYYDSSVTTKELTRSFGWDTYDSFMQHDVQELNRVLCEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCRDVYASFDKYVEVERLEGDNKYQAEE-HGLQDAKKGVLFIDFPPVLQLHLKRFEYDFMRDTMVKINDRYEFPLQLDLDRDNGKYLSPDA 431
[Close]
BLAST of jgi.p|Trimin1|146118 vs. uniprot
Match: A0A446SUA6_TRITD (Uncharacterized protein n=2 Tax=Triticum turgidum subsp. durum TaxID=4567 RepID=A0A446SUA6_TRITD)

HSP 1 Score: 275 bits (702), Expect = 1.630e-88
Identity = 139/234 (59.40%), Postives = 168/234 (71.79%), Query Frame = 1 
Query:    4 VGLLNQGATCYMNSLLQTLYHLRQLRKAVYDMPSAAASDSEGGVAFALQKTFYMLQTSDHPVSTKHLTQSFGWDTYEAYMQQDVQELNRVLMDKLETIMKGTPVDGTVGALFEGSTRAYIRCTDVPYESRRDETFHDIQLDVKGCKTIHDSFARYIEEEVLDGEDKYDAGPVHGKQKAKKGVRFLRYPPVLTIHLKRFEYDMASGNMVKVNDRYEFPFQLDVDP----YLAEDA 693
            VGL NQGATCYMNSLLQTLYH+   RKAVY MP+       G +  ALQ  FY LQ SD+ V+TK LT+SFGWDTY+++MQ DVQELNRVL +KLE  MKGT V+GT+  LFEG    YI C +V Y+S R E+F+D+QLDVKGC  ++ SF +Y+E E L+G++KY A   HG Q A+KGV FL +PPVL + LKRFEYD     MVK+NDRYEFP QLD+D     YL  DA
Sbjct:  100 VGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDMPSGSIPLALQSLFYKLQYSDNSVATKELTKSFGWDTYDSFMQHDVQELNRVLCEKLEDKMKGTVVEGTIEQLFEGHHINYIECINVDYKSNRKESFYDLQLDVKGCHDVYASFDKYVEVERLEGDNKYQAEQ-HGLQDARKGVLFLDFPPVLQLQLKRFEYDYMRDTMVKINDRYEFPLQLDLDKDDGKYLTPDA 332
[Close]
BLAST of jgi.p|Trimin1|146118 vs. uniprot
Match: A0A453I340_AEGTS (Ubiquitin carboxyl-terminal hydrolase n=3 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453I340_AEGTS)

HSP 1 Score: 278 bits (710), Expect = 5.370e-87
Identity = 141/234 (60.26%), Postives = 170/234 (72.65%), Query Frame = 1 
Query:    4 VGLLNQGATCYMNSLLQTLYHLRQLRKAVYDMPSAAASDSEGGVAFALQKTFYMLQTSDHPVSTKHLTQSFGWDTYEAYMQQDVQELNRVLMDKLETIMKGTPVDGTVGALFEGSTRAYIRCTDVPYESRRDETFHDIQLDVKGCKTIHDSFARYIEEEVLDGEDKYDAGPVHGKQKAKKGVRFLRYPPVLTIHLKRFEYDMASGNMVKVNDRYEFPFQLDVD----PYLAEDA 693
            VGL NQGATCYMNSLLQTLYH+   RKAVY MP+       G +  ALQ  FY LQ SD+ V+TK LT+SFGWDTY+++MQ DVQELNRVL +KLE  MKGT V+GT+  LFEG    YI C +V Y+S R E+F+D+QLDVKGC+ ++ SF +Y+E E L+G++KY A   HG Q AKKGV FL +PPVL + LKRFEYD     MVK+NDRYEFP QLD+D     YLA DA
Sbjct:  251 VGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDMPSGSIPLALQSLFYKLQYSDNSVATKELTKSFGWDTYDSFMQHDVQELNRVLCEKLEDKMKGTVVEGTIEQLFEGHHINYIECINVDYKSNRKESFYDLQLDVKGCRDVYASFDKYVEVERLEGDNKYHAEN-HGLQDAKKGVLFLDFPPVLQLQLKRFEYDYMRDTMVKINDRYEFPLQLDLDRDDGKYLAPDA 483
[Close]
BLAST of jgi.p|Trimin1|146118 vs. uniprot
Match: UPI000B8CA9DB (ubiquitin carboxyl-terminal hydrolase 12-like isoform X1 n=2 Tax=Carica papaya TaxID=3649 RepID=UPI000B8CA9DB)

HSP 1 Score: 273 bits (699), Expect = 9.410e-87
Identity = 137/234 (58.55%), Postives = 169/234 (72.22%), Query Frame = 1 
Query:    4 VGLLNQGATCYMNSLLQTLYHLRQLRKAVYDMPSAAASDSEGGVAFALQKTFYMLQTSDHPVSTKHLTQSFGWDTYEAYMQQDVQELNRVLMDKLETIMKGTPVDGTVGALFEGSTRAYIRCTDVPYESRRDETFHDIQLDVKGCKTIHDSFARYIEEEVLDGEDKYDAGPVHGKQKAKKGVRFLRYPPVLTIHLKRFEYDMASGNMVKVNDRYEFPFQLDVDP----YLAEDA 693
            VGL NQGATCYMNSLLQTLYH+   RKAVY MP+       G +  ALQ  FY LQ SD  V+TK LT+SFGWDTY+++MQ DVQELNRVL +KLE  MKGT V+GT+  LFEG    YI C +V Y+S R E+F+D+QLDVKGC+ ++ SF +Y+E E L+G++KY A   +G Q AKKGV F+ +PPVL + LKRFEYD     MVK+NDRYEFP QLD+D     YL+ +A
Sbjct:  198 VGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDMPSGSIPLALQSLFYKLQYSDSSVATKELTKSFGWDTYDSFMQHDVQELNRVLCEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCRDVYSSFDKYVEVERLEGDNKYHAEQ-YGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMKDTMVKINDRYEFPLQLDLDKDDGKYLSPEA 430
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|146118 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z6Y2_9STRA7.010e-169100.00USP domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A6H5KU31_9PHAE1.800e-9967.53USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LL31_ECTSI2.220e-9967.10USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S2B0F0_9STRA4.380e-9762.77Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A446U041_TRITD1.090e-8959.40USP domain-containing protein n=2 Tax=Triticum tur... [more]
A0A446SUA3_TRITD8.270e-8959.40Uncharacterized protein n=1 Tax=Triticum turgidum ... [more]
UPI0011D1A4F71.300e-8859.40ubiquitin carboxyl-terminal hydrolase 13-like isof... [more]
A0A446SUA6_TRITD1.630e-8859.40Uncharacterized protein n=2 Tax=Triticum turgidum ... [more]
A0A453I340_AEGTS5.370e-8760.26Ubiquitin carboxyl-terminal hydrolase n=3 Tax=Aegi... [more]
UPI000B8CA9DB9.410e-8758.55ubiquitin carboxyl-terminal hydrolase 12-like isof... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_25contigContig_25:965911..970734 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|146118|gw1.25.101.1
BRITEko00000,ko00001,ko01000,ko01002,ko04121
KEGG Pathwayko04068,ko05168,ko05169,ko05203,map04068,map05168,map05169,map05203
KEGG koko:K11838
EC3.4.19.12
Descriptionubiquitinyl hydrolase activity
COG categoryO
Max annot lvl2759|Eukaryota
EggNOG OGsCOG5077@1|root,KOG1863@2759|Eukaryota
Evalue3.64e-100
Seed ortholog2880.D8LL31
Hectar predicted targeting categoryother localisation
TranscriptId146440
TrackFilteredModels1
ProteinId146118
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|146118gene_6704Tribonema minus UTEX_B_3156 geneContig_25 965911..970734 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|146118Trimin1|146118|gw1.25.101.1Tribonema minus UTEX_B_3156 polypeptideContig_25 965911..970734 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6704_6exon_6704_6Tribonema minus UTEX_B_3156 exonContig_25 965911..965973 -
exon_6704_5exon_6704_5Tribonema minus UTEX_B_3156 exonContig_25 967143..967229 -
exon_6704_4exon_6704_4Tribonema minus UTEX_B_3156 exonContig_25 967850..967937 -
exon_6704_3exon_6704_3Tribonema minus UTEX_B_3156 exonContig_25 968891..969075 -
exon_6704_2exon_6704_2Tribonema minus UTEX_B_3156 exonContig_25 969610..969715 -
exon_6704_1exon_6704_1Tribonema minus UTEX_B_3156 exonContig_25 970571..970734 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6704CDS_6704Tribonema minus UTEX_B_3156 CDSContig_25 970571..970734 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6704 ID=mRNA_6704|Name=jgi.p|Trimin1|146118|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=693bp|location=Sequence derived from alignment at Contig_25:965911..970734- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGGGCCTGCTCAACCAGGGCGCCACGTGCTACATGAACTCGCTGCT
GCAGACGCTGTACCACCTAAGACAGCTGCGAAAGGCCGTGTACGACATGC
CGTCGGCGGCCGCGAGCGACAGCGAGGGCGGCGTGGCCTTTGCGCTGCAG
AAGACCTTCTACATGCTGCAGACGTCGGACCACCCGGTGTCCACGAAGCA
CCTGACGCAGAGCTTCGGCTGGGACACGTACGAGGCGTACATGCAACAGG
ACGTGCAAGAGCTCAACAGGGTCCTGATGGACAAGCTGGAGACAATAATG
AAGGGCACGCCCGTGGACGGCACCGTGGGCGCGCTGTTTGAGGGCTCCAC
ACGCGCATACATCAGGTGCACAGACGTGCCGTACGAGAGCCGACGCGACG
AGACGTTTCACGACATCCAGCTCGACGTCAAGGGCTGCAAGACCATACAC
GACAGTTTTGCACGTTACATAGAGGAGGAGGTATTGGATGGCGAAGACAA
ATACGATGCAGGGCCTGTGCACGGCAAGCAGAAGGCAAAGAAGGGGGTGC
GCTTCCTCCGATACCCCCCCGTACTCACCATCCACCTGAAGCGCTTCGAG
TACGACATGGCGTCGGGCAACATGGTCAAGGTGAACGACCGCTACGAGTT
CCCCTTCCAGCTGGACGTGGACCCGTACTTGGCGGAGGACGCG
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protein sequence of jgi.p|Trimin1|146118

>Trimin1|146118|gw1.25.101.1 ID=Trimin1|146118|gw1.25.101.1|Name=jgi.p|Trimin1|146118|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=231bp
MVGLLNQGATCYMNSLLQTLYHLRQLRKAVYDMPSAAASDSEGGVAFALQ
KTFYMLQTSDHPVSTKHLTQSFGWDTYEAYMQQDVQELNRVLMDKLETIM
KGTPVDGTVGALFEGSTRAYIRCTDVPYESRRDETFHDIQLDVKGCKTIH
DSFARYIEEEVLDGEDKYDAGPVHGKQKAKKGVRFLRYPPVLTIHLKRFE
YDMASGNMVKVNDRYEFPFQLDVDPYLAEDA
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mRNA from alignment at Contig_25:965911..970734-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6704 ID=mRNA_6704|Name=jgi.p|Trimin1|146118|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4824bp|location=Sequence derived from alignment at Contig_25:965911..970734- (Tribonema minus UTEX_B_3156 )
ATGGTGGGCCTGCTCAACCAGGGCGCCACGTGCTACATGAACTCGCTGCT
GCAGACGCTGTACCACCTAAGACAGCTGCGAAAGGCCGTGTACGACATGC
CGTCGGCGGCCGCGAGCGACAGCGAGGGCGGCGTGGCCTTTGCGCTGCAG
AAGACCTTCTACATGTGCGTGCTGGCGCATGTATGTATGCATTGTAGTGC
GCGCTGCAGAAGACGTTCTACATGTGCGTGCTGGCGTGTGTATGTATGCA
TTGCTGGTGTATGTATGTATATATCGATGGTGCATGCATGTAAACTTCTA
CATTGATGGTGCGTGTAGACATCGATGGTGTATGTGCGCATACATCCAAG
TGTATGTGAGTATGCATCCAAGCTTGCGTCAGAAGTTGCTAATAACGCTG
GTGCATGTTTCTCAGGATCAGTGACTGTAACTGTAGCAAACTGGCGAGAT
TGTTTGTGTTGCTGAGGCGATGCCGCATGCTTCATCGGAGGAGTTAGGGC
CCACGCAACGCTGTTGCTGCCGCCGGTGCCGCTGCCGCCGCTGCTGCTTC
TGCCACCGCCGCCGCTGTGGCGGTCCTGTGCGCTTCTGATGCTTGCCTCT
ATTACTACAAGCGTGCCAGGCCGCTACGCACAGCAGTCAAGTGATCGCCG
CCAACAATGTTGTTTTTCATTGACCGTTTATGCCACGTCTGCGCCGCTGT
GGGGGCGCGCTGCTGTACTGCATTGGCGCTGGCGCTGCCGCCGCTTGTGC
CGCTGCTGCGCGCTGCAGGCATCTCGTCGAGCCGTGCTGCGCGGCAGCGC
TCATCGCCAGGCGCCGCTGTTTGTGTGCAGACGCACGCTCCGCAGAGGCG
CGCTGCAACCGTGTGTTGCTACCGATGCTGAGCGCGGCTCCCGCCGCCGC
TGCTGCTGCTGCTGCCGCGCTGCTCTTCACTGGCCGTTGCTATCAATGCT
GAGCGCTGCTGCTGCCACCGCTGCTGCCGCTGCTGCTGCCGCTGCCGCGC
TGCTTTCGCCGCGGCGCAGGCTGCAGACGTCGGACCACCCGGTGTCCACG
AAGCACCTGACGCAGAGCTTCGGCTGGGACACGTACGAGGCGTACATGCA
ACAGGACGTGCAAGAGCTCAACAGGGTGAGTCGGAGTCGCTAGCTCAGGG
TCAGGGTTAATGGGGAATCAAAAGATCGTAGAGCTCTAGGTGACAAGGGG
TGCTTAGCCGCAAGCGCCTTCCACCATATATAATCCCATATCGCGGTAGA
GGCGCCGATGCGCGCGCGGCCGCATGACTTCAAGGGGGCGTGCGTACATG
GATTCCATTTTGTGCTTCTGGCACGCGATTGCAGCATGCCTCACTATTCC
CGACACCGCGCGACATCGCGATGCGCCCCCTCTCGCGCGCCTTGCTGGAC
GCGATTCGATGCTACAATATACGCTGCTGTCGCCTCCCCCCCCCCCCCTC
CCTTCCCCTCCCCGGCCCCCCTGTCGCCCCCCTCCCCCCCCCCCCCTCCC
CTTGACGAAGTCACTGCGGCTCGGACTCCCCCCCTCCCCCTGGTCTTGTG
ACAAAAGCAATGTGGTACATGTACCCCCGCCCCCCCCCCCCCTCTCTTCC
TTCTGACATGAACGGTGTGGTGCGCACTTGCCCCCCCCCCCCCCCCCCCC
TTGTTTCAGGTCCTGATGGACAAGCTGGAGACAATAATGAAGGGCACGCC
CGTGGACGGCACCGTGGGCGCGCTGTTTGAGGGCTCCACACGCGCATACA
TCAGGTGCACAGACGTGCCGTACGAGAGCCGACGCGACGAGACGTTTCAC
GACATCCAGCTCGACGTCAAGGGCTGCAAGACCATACACGACAGGTGAGG
GCGTGCGACTTGTTGAAGAAGTGAAGTAGTAGACTACGTATGTTGAAGTG
TGCGCTGAGACTACACATGTTGGAGTATGTGTTGAAGTGCGGTCGTATGA
GAGCCGGCGCGACGAGACGTTCCACGACATCCAGCTCGAGTCAAGGCTGC
AAGACCATACACGACAGGTGCGTGATGTTGAAGTGCATGTTGAAGTGTTG
TGGTTTGAGGGCAGCACGCGCGTGTACATCAGGTGCACAGACGTGCCGTA
CGAGAGCTGGCGCCACGAGACGTTCCACGACTTACAGCTCGACGTCAAGG
GCTGCAAGACCATACACGACAGGTGTGCAATGTTGAAGTATATGTTGAAG
TTTCATTGTACGAGAGCCGGCGCGACGAGACGTTCCATGACCCACAGCTC
GGCCTTAAGGGCTGTAAGACCATACACGACAGGTGCGCGCAGGGTGTGCA
TGGGTTCACACGCGCTGAACCGTGATTGTCGCGCAAGCTGAAGTAGTGGT
GGACGACGTGCATGTTGAAGTATATGTTGAAGTGCATTGACGCCGATGCG
CTCAATGAGAGGCGGCGCACCAGTCCACAGCGCACAGCTGGAGGATACGG
GCTGTCGGACCGTACGCGGCAGGTGACACGTGCGCGCAGTACATATGTGC
GCCTGTGCGTATCGCATGCTGAAGCGGACTGCGCGTGCATGTTGCTTTCC
TGACGTGCAGCGCGACGTCAAGCGCTGCCGGACAGTGACAGTGCGCGACA
GGTGCCCTTGCATGGATGCGTGTGCGTGGGTCATGCGCTGGCGATTGTGC
GTTCTTGCAGTAGCGACGGAGTACATGGATATGAGGTGTTGCTTGCAAGT
GTCCCGGTACTCCTGCTGATCCTGCCCCCTTACCCCCCCCCCCCCCCCCC
CCCCCCCCCGCCCGTCCCCCCTTGCCCCCCCTGCGTTCATCTGCCAGTTT
TGCACGTTACATAGAGGAGGAGGTATTGGATGGCGAAGACAAATACGATG
CAGGGCCTGTGCACGGCAAGCAGAAGGCAAAGAAGGTGATACTTCGTACA
AGTATACTGATTATTCTCTCTCTTGAAATGCGTGAGAGCGTGGGCAGATG
TGAGCACGGCGCGCTGCAAACCTCAAGTTGCGGTTCATGCGCCGGAGGCC
CATAAGCGCGCACCTGCTGCTGAACGCATGCGCTGCATGCAGTCGCGCTG
GTGGTGGGCCGCTGATGTGTTTTGAAAGAAAGCTGCTGCTTCGCCTAGAT
GCTGCGGTTGACGACCGCACAGCAATGCGTGACAAGCGCATCGGACGTGC
TTCTTGCTTTTTCTTCTAGCACAGGAAATGGAGGGCGCATTCCTCATAAC
CTCGACCTCAATCATGCACTACTGACTTCAAAGTGTTCATGTACTCCAAG
TATGTGCCATATACGTTCGCCGTCGCCCCATGTTTGCCCCAGGGGGTGCG
CTGCCTTTTAAATCACTCCATATAGTGTTTTCTTTGTTTTTTTAAAGCAC
AGGATCTTGAGGGCGCGTTCCTCACTTTCAGGCCTCAACCGTGGTGCTAC
TTCAACGTAGGCATGCATGTGCCATATATCTTCGCCGTCGCCGCTGCTGC
GCGCTCTGATGGCATGCGCCGCGCGCCCCCCCCCCCCGCCTCGTGTTTGC
CCCAGGGGGTGCGCTTCCTCCGATACCCCCCCGTACTCACCATCCACCTG
AAGCGCTTCGAGTACGACATGGCGTCGGGCAACATGGTCAAGGTGAGGGG
CGACGGTTGCGGCAGTTACGCGCGCCGCAAGCCCTGACCCTAGGGCACCG
CAGTCGTGCTGACGGCGCTCGAGATTGCAGGCAAAAGGCGCGCGTGGTGT
GTGCAGCTCTGTCTGGAGTTGACGCCGACGCAATCAAGTCCGGCGACAGT
TACGCTCACTGCATCCTGACGCTAGGGCACGGTTGTGCTAACGGCACTCG
CGGTCGTGGGCGATTTGCGACACCGCACAGTTGAGGTTATGACAGCGCTA
GCAGGTTTTCATGAGGCAATTCACCATCAAACCATTGCCAACGTGAGCAA
GGTCAGTCTGGCGAGCAGTATAACTAATGCGTGGCAACGCTCTGCAAGTG
CAGCAGGCGGCGGCCGCATGTGTGTATGCCGTCGTCTCCTGCGGGGGGGG
TGGTGGGTTAGGGTTAGTGTTAGGGTTAGAGTTAAGGTTAGGGTTAGAGA
TTCCGTCTTGTCCTCGCGCCAGCGCTCAGCAAAGTCAGCACTGTGACCGA
TGCCGCCATGCGTCTGTGGATGAGCAAAGCGCCTTGGGCACACAAGCACC
AAAATCTCGTACTTCAAGTAGCTTCGAGCGGCTCAGCTGCGGACAGCGCG
TGTGTGCGGAGTCGACTTCAATTCTGACTATCGCATAACAGTACAGGTCG
GAGGGAGCGAGCCACCAGGCGCTGCGCGGCTCGATTTGCACATGTACACA
GCGCGCGCATCTTCATCCAAACGTGAACAATGTACAATGCTTGTAAAAGT
ATACACGTCTACTGTACGTTTCATTAATGTATGTTTGATGTATGAAAACG
AATCAAAAGATCGTAGAGCTCTAGGTGACAAGGGATGGTTAGCCGCAAGT
GCCTTCCACCAGTAACCGTGGTCGCCGCTGCTGCAGCAATTGGCCACGAG
TCAAACAATACCACCGTATCCACCAGTCAAAATGACTTTTGTGTGCAAGC
TTTTAGCGTTCGAGGCACGGGTATTCAGTATTGGAAAGGTCTCACGTGTT
CGGTAGGCCAGCTCCAGCCGGCAGCCCAACACAGAGGTCAGCAGCTAGTG
ACAGCGCTCTTGAATGCGCGTAGTGTAGAAGGTGATGACGCGGGTTTTGA
ACCAATCCATGCGGCGACATGGAAGGCTCCAGGTTGATGTATGTTTTGTG
TACGTATGCAGGTGAACGACCGCTACGAGTTCCCCTTCCAGCTGGACGTG
GACCCGTACTTGGCGGAGGACGCG
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Coding sequence (CDS) from alignment at Contig_25:965911..970734-

>mRNA_6704 ID=mRNA_6704|Name=jgi.p|Trimin1|146118|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=693bp|location=Sequence derived from alignment at Contig_25:965911..970734- (Tribonema minus UTEX_B_3156 )
ATGGTGGGCCTGCTCAACCAGGGCGCCACGTGCTACATGAACTCGCTGCT
GCAGACGCTGTACCACCTAAGACAGCTGCGAAAGGCCGTGTACGACATGC
CGTCGGCGGCCGCGAGCGACAGCGAGGGCGGCGTGGCCTTTGCGCTGCAG
AAGACCTTCTACATGCTGCAGACGTCGGACCACCCGGTGTCCACGAAGCA
CCTGACGCAGAGCTTCGGCTGGGACACGTACGAGGCGTACATGCAACAGG
ACGTGCAAGAGCTCAACAGGGTCCTGATGGACAAGCTGGAGACAATAATG
AAGGGCACGCCCGTGGACGGCACCGTGGGCGCGCTGTTTGAGGGCTCCAC
ACGCGCATACATCAGGTGCACAGACGTGCCGTACGAGAGCCGACGCGACG
AGACGTTTCACGACATCCAGCTCGACGTCAAGGGCTGCAAGACCATACAC
GACAGTTTTGCACGTTACATAGAGGAGGAGGTATTGGATGGCGAAGACAA
ATACGATGCAGGGCCTGTGCACGGCAAGCAGAAGGCAAAGAAGGGGGTGC
GCTTCCTCCGATACCCCCCCGTACTCACCATCCACCTGAAGCGCTTCGAG
TACGACATGGCGTCGGGCAACATGGTCAAGGTGAACGACCGCTACGAGTT
CCCCTTCCAGCTGGACGTGGACCCGTACTTGGCGGAGGACGCG
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