mRNA_6667 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|348495
Unique NamemRNA_6667
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|348495 vs. uniprot
Match: A0A835Z0Y7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0Y7_9STRA)

HSP 1 Score: 152 bits (385), Expect = 2.880e-44
Identity = 114/116 (98.28%), Postives = 114/116 (98.28%), Query Frame = 1 
Query:    1 MKGNIYALQGRGFWKKYVKVGRFTAKQRRTXXXXXXXXXXXXXXXXXXXSAPAIGRPGAPEVIDDEEEGLLEVEVEDDXXXXXGSASDGGSAASAWSEGGGSEDGXXXGSEYESDE 348
            MKGNIYALQGRGFWKKYVKVGRFTAKQRRTXXXXXXXXXXXXXXXXXXXSAPAIGRPGAPEVIDDEEEGLLEVEVEDDXXXXXGSAS G SAASAWSEGGGSEDGXXXGSEYESDE
Sbjct:    1 MKGNIYALQGRGFWKKYVKVGRFTAKQRRTXXXXXXXXXXXXXXXXXXXSAPAIGRPGAPEVIDDEEEGLLEVEVEDDXXXXXGSASXGXSAASAWSEGGGSEDGXXXGSEYESDE 116
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348495 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835Z0Y7_9STRA2.880e-4498.28Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_25contigContig_25:576728..578063 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|348495|estExt_Genemark1.C_Ctg_250075
Hectar predicted targeting categoryother localisation
TranscriptId348817
TrackFilteredModels1
ProteinId348495
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348495gene_6667Tribonema minus UTEX_B_3156 geneContig_25 576728..578063 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6667_1exon_6667_1Tribonema minus UTEX_B_3156 exonContig_25 576728..576754 +
exon_6667_2exon_6667_2Tribonema minus UTEX_B_3156 exonContig_25 577455..578063 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6667CDS_6667Tribonema minus UTEX_B_3156 CDSContig_25 576728..576754 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_6667UTR3_6667Tribonema minus UTEX_B_3156 three_prime_UTRContig_25 577779..578063 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348495Trimin1|348495|estExt_Genemark1.C_Ctg_250075Tribonema minus UTEX_B_3156 polypeptideContig_25 576728..577778 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6667 ID=mRNA_6667|Name=jgi.p|Trimin1|348495|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=636bp|location=Sequence derived from alignment at Contig_25:576728..578063+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAAAGGCAACATTTATGCGCTTCAGGGGCGCGGCTTCTGGAAGAAGTA
CGTGAAGGTGGGTCGCTTCACGGCCAAGCAGCGGCGCACGAGCGCCGCTG
CTGCTGCTGCTGCCGCTTCTGCTGCTGCTGCCGTCGCCGCCCCGCCGTCT
GCACCGGCAATCGGCAGGCCAGGGGCGCCCGAGGTCATCGACGACGAAGA
GGAGGGATTACTTGAAGTTGAAGTTGAAGATGATGATGAGGGCGACGAGG
GCAGCGCGAGTGACGGCGGCAGCGCCGCGAGCGCGTGGAGCGAAGGCGGC
GGCAGCGAAGACGGCAGCGAAGACGGCAGCGAGTATGAGTCGGATGAATG
ACAATGACTCTCTCCGGAGGAGAAAATCTGTCGGTTCGCCTTCTACCTGT
TGTAAAATGCTGCACTGGTTGCTGGCTCTGCCAGTGCCAAGGCACGCGTG
CCGGAATGCAGGTGCTGTGTCGTGATCGCGCGCGTTGGCGTCACCGAGGC
GCGCGTGTTGTCAGTACACGACGTACCATACTACTACACACATTGAGATA
GCGCCAAGACTTGTAGAAGCATATACTTCGAAGTATAGAAATTATTCGCC
ATTCACTTGAAGGCGAGTTTTCACAAGTACTTAGGG
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protein sequence of jgi.p|Trimin1|348495

>Trimin1|348495|estExt_Genemark1.C_Ctg_250075 ID=Trimin1|348495|estExt_Genemark1.C_Ctg_250075|Name=jgi.p|Trimin1|348495|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=117bp
MKGNIYALQGRGFWKKYVKVGRFTAKQRRTSAAAAAAAASAAAAVAAPPS
APAIGRPGAPEVIDDEEEGLLEVEVEDDDEGDEGSASDGGSAASAWSEGG
GSEDGSEDGSEYESDE*
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mRNA from alignment at Contig_25:576728..578063+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6667 ID=mRNA_6667|Name=jgi.p|Trimin1|348495|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1336bp|location=Sequence derived from alignment at Contig_25:576728..578063+ (Tribonema minus UTEX_B_3156 )
ATGAAAGGCAACATTTATGCGCTTCAGGTACGTGAGCATCGATTACATCG
ACATGCACAGTGAGCAGGTGCGTAGCCTAAATGAGCGGCATGCTGCCCGC
ATCAGCAGTTGCAACAGACACTGATGTGCCAGCAATGCAGGCATCTTCAA
GTTGCGGTTCTGAGCGGTGCTGCATGTGCTGCGTGCAGTGCCGTGCGCGA
CGGCTCATCGCGGTGCACACTGCCTGCCGCACCGCGTGCGCAGTGCATGC
GATGCCCTGTTTTTTGGAAGCTGACCCCTGCGCGCTGCATGCAACACACC
ATAAGCACCGAGTGGCCTTATGTTTCGCCGCATTTACCTCCCATCGCTGA
ACCTTACACAGCAATTGCAGCGACATGATACGACTGTCTGGAGGTCAGGG
AGCGTCTGCAGATTGAGTGCAGAGCGCCGCCATAGCCCTAAGCCGCACGC
CGCCAACCCTCCTGACGCTAACGCCATCACTCCAGGGTTTTCCGCGGACT
TCGCTTCATGCTTCCTTCTGCTGATGTTGTCCATGACACAGAAAAGAGGT
CGTCACTGCCCAGGTGACGCGCCATTGCTGTACCTGGAGCAGAGGTCAGC
TCCGGCAATGCTCTCACACCGACAGCACCATATTACGCATGAGTAACATT
TGTCAGAGTGCGCCCTATGTCATCATCGCACGCTTCCGATTTTGAAACGT
CACACATGTGACGTGCCTCCCGCGCAGGGGCGCGGCTTCTGGAAGAAGTA
CGTGAAGGTGGGTCGCTTCACGGCCAAGCAGCGGCGCACGAGCGCCGCTG
CTGCTGCTGCTGCCGCTTCTGCTGCTGCTGCCGTCGCCGCCCCGCCGTCT
GCACCGGCAATCGGCAGGCCAGGGGCGCCCGAGGTCATCGACGACGAAGA
GGAGGGATTACTTGAAGTTGAAGTTGAAGATGATGATGAGGGCGACGAGG
GCAGCGCGAGTGACGGCGGCAGCGCCGCGAGCGCGTGGAGCGAAGGCGGC
GGCAGCGAAGACGGCAGCGAAGACGGCAGCGAGTATGAGTCGGATGAATG
ACAATGACTCTCTCCGGAGGAGAAAATCTGTCGGTTCGCCTTCTACCTGT
TGTAAAATGCTGCACTGGTTGCTGGCTCTGCCAGTGCCAAGGCACGCGTG
CCGGAATGCAGGTGCTGTGTCGTGATCGCGCGCGTTGGCGTCACCGAGGC
GCGCGTGTTGTCAGTACACGACGTACCATACTACTACACACATTGAGATA
GCGCCAAGACTTGTAGAAGCATATACTTCGAAGTATAGAAATTATTCGCC
ATTCACTTGAAGGCGAGTTTTCACAAGTACTTAGGG
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Coding sequence (CDS) from alignment at Contig_25:576728..578063+

>mRNA_6667 ID=mRNA_6667|Name=jgi.p|Trimin1|348495|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=351bp|location=Sequence derived from alignment at Contig_25:576728..578063+ (Tribonema minus UTEX_B_3156 )
ATGAAAGGCAACATTTATGCGCTTCAGGGGCGCGGCTTCTGGAAGAAGTA
CGTGAAGGTGGGTCGCTTCACGGCCAAGCAGCGGCGCACGAGCGCCGCTG
CTGCTGCTGCTGCCGCTTCTGCTGCTGCTGCCGTCGCCGCCCCGCCGTCT
GCACCGGCAATCGGCAGGCCAGGGGCGCCCGAGGTCATCGACGACGAAGA
GGAGGGATTACTTGAAGTTGAAGTTGAAGATGATGATGAGGGCGACGAGG
GCAGCGCGAGTGACGGCGGCAGCGCCGCGAGCGCGTGGAGCGAAGGCGGC
GGCAGCGAAGACGGCAGCGAAGACGGCAGCGAGTATGAGTCGGATGAATG
A
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