mRNA_6616 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|163245
Unique NamemRNA_6616
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|163245 vs. uniprot
Match: A0A836CF92_9STRA (E2F-associated phosphoprotein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF92_9STRA)

HSP 1 Score: 327 bits (837), Expect = 7.020e-113
Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 1 
Query:    1 MTRTLTLAPSCPRRDPELYDKDLDDQDEVFVQAHYRGVPKSKPVPPQRHAQRQEGQHGEDKAQPSRFKSDAHLSCPACFDSVCLECQRHARYANQYRAMLVMNVTVDTDQVLVPRQXXXXXXXXXXXXPSGGYGAPPQEALHPVRCAGCGAELGVYEADEELYHFFNVIATS 516
            MTRTLTLAPSCPRRDPELYDKDLDDQDEVFVQAHYRGVPKSKPVPPQRHAQRQEGQHGEDKAQPSRFKSDAHLSCPACFDSVCLECQRHARYANQYRAMLVMNVTVDTDQVLVPRQXXXXXXXXXXXXPSGGYGAPPQEALHPVRCAGCGAELGVYEADEELYHFFNVIATS
Sbjct:    1 MTRTLTLAPSCPRRDPELYDKDLDDQDEVFVQAHYRGVPKSKPVPPQRHAQRQEGQHGEDKAQPSRFKSDAHLSCPACFDSVCLECQRHARYANQYRAMLVMNVTVDTDQVLVPRQXXXXXXXXXXXXPSGGYGAPPQEALHPVRCAGCGAELGVYEADEELYHFFNVIATS 172
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BLAST of jgi.p|Trimin1|163245 vs. uniprot
Match: UPI001C4AB442 (E2F-associated phosphoprotein-like n=2 Tax=Zingiber officinale TaxID=94328 RepID=UPI001C4AB442)

HSP 1 Score: 107 bits (267), Expect = 2.610e-26
Identity = 64/159 (40.25%), Postives = 81/159 (50.94%), Query Frame = 1 
Query:   43 DPELYDKDLDDQDEVFVQAHYRGVPKSKPVPPQRHAQRQEGQHGEDKAQPSRFKSDAHLSCPACFDSVCLECQRHARYANQYRAMLVMNVTVDTDQVLVPRQXXXXXXXXXXXXPSGG-YGAPPQEALHPVRCAGCGAELGVYEADEELYHFFNVIATS 516
            +PE YD +LDD+DE +V                         H + K Q     SDA LSCPACF ++CL+CQRH RY  QYRAM V N  + TDQ+L                 +G   G P  E  HPV C+ C  E+GVY+ DE +YHFFNVI ++
Sbjct:   35 EPEFYDSNLDDKDEQWV-------------------------HNKRKGQ----TSDAVLSCPACFTTLCLDCQRHERYVTQYRAMFVFNCKIITDQILPQANTKQQRNSKHRKISTGSDEGTPNDEIFHPVCCSVCSTEVGVYDKDE-VYHFFNVIPSN 163
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BLAST of jgi.p|Trimin1|163245 vs. uniprot
Match: A0A8J5F3A8_ZINOF (Uncharacterized protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5F3A8_ZINOF)

HSP 1 Score: 107 bits (268), Expect = 5.640e-26
Identity = 64/159 (40.25%), Postives = 82/159 (51.57%), Query Frame = 1 
Query:   43 DPELYDKDLDDQDEVFVQAHYRGVPKSKPVPPQRHAQRQEGQHGEDKAQPSRFKSDAHLSCPACFDSVCLECQRHARYANQYRAMLVMNVTVDTDQVLVPRQXXXXXXXXXXXXPSGG-YGAPPQEALHPVRCAGCGAELGVYEADEELYHFFNVIATS 516
            +PE YD +LDD+DE +V                         H + K Q     SDA LSCPACF ++CL+CQRH RY  QYRAM V N  + TDQ+L   +             +G   G P  E  HPV C+ C  E+GVY+ DE +YHFFNVI ++
Sbjct:   87 EPEFYDSNLDDKDEQWV-------------------------HNKRKGQ----TSDAVLSCPACFTTLCLDCQRHERYVTQYRAMFVFNCKIITDQILPQAKTKHQRNSKHRKISTGSDEGTPNDEIFHPVCCSVCSTEVGVYDKDE-VYHFFNVIPSN 215
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BLAST of jgi.p|Trimin1|163245 vs. uniprot
Match: A0A8J5FB85_ZINOF (Uncharacterized protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5FB85_ZINOF)

HSP 1 Score: 106 bits (264), Expect = 1.660e-25
Identity = 62/158 (39.24%), Postives = 80/158 (50.63%), Query Frame = 1 
Query:   43 DPELYDKDLDDQDEVFVQAHYRGVPKSKPVPPQRHAQRQEGQHGEDKAQPSRFKSDAHLSCPACFDSVCLECQRHARYANQYRAMLVMNVTVDTDQVLVPRQXXXXXXXXXXXXPSGG-YGAPPQEALHPVRCAGCGAELGVYEADEELYHFFNVIAT 513
            +PE YD +LDD+DE +V                         H + K Q     SDA LSCPACF ++CL+CQRH RY  QYRAM V N  + TDQ+L                 +G   G P  E  HPV C+ C  E+GVY+ DE +YHFFN++ +
Sbjct:   76 EPEFYDSNLDDKDEQWV-------------------------HNKRKGQ----TSDAVLSCPACFTTLCLDCQRHERYVTQYRAMFVFNCKIITDQILPQANTKQQRNSKHRKISTGSDEGTPNDEIFHPVCCSVCSTEVGVYDKDE-VYHFFNILVS 203
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BLAST of jgi.p|Trimin1|163245 vs. uniprot
Match: A0A3Q2NTH8_FUNHE (E2F associated phosphoprotein n=2 Tax=Fundulus heteroclitus TaxID=8078 RepID=A0A3Q2NTH8_FUNHE)

HSP 1 Score: 107 bits (268), Expect = 3.220e-25
Identity = 68/174 (39.08%), Postives = 92/174 (52.87%), Query Frame = 1 
Query:   34 PRRDPELYDKDLDDQDEVFVQAH-YRGVPKSKPVPPQRHAQRQEGQHGEDKAQPSRFKSDAHLSCPACFDSVCLECQRHARYANQYRAMLVMNVTVDTDQVL--------VPRQXXXXXXXXXXXXPSGGYGAPP-----QEALHPVRCAGCGAELGVYEADEELYHFFNVIAT 513
            P  D  LYD D DD+D+ +V A  Y G  +  P            QH + +  PS   SDA L+CPAC  ++CL+CQRH +Y  QYRAM VMN TV+TD+VL         PR+            P+G     P      E  HPV+C+ C  E+ V++ DE +YHFFN++A+
Sbjct:  137 PTNDELLYDPDEDDRDQAWVDARRYNGRKQQDPA--------SRSQHRQSQRLPS---SDAVLNCPACMTTLCLDCQRHEKYRTQYRAMFVMNCTVETDEVLRYKTQQQKTPRKRRRGQNPEGP--PNGATSPMPAGMDSDEIYHPVKCSECSTEVAVFDKDE-VYHFFNILAS 296
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BLAST of jgi.p|Trimin1|163245 vs. uniprot
Match: A0A565CJ00_9BRAS (Uncharacterized protein n=1 Tax=Arabis nemorensis TaxID=586526 RepID=A0A565CJ00_9BRAS)

HSP 1 Score: 103 bits (258), Expect = 3.240e-25
Identity = 62/154 (40.26%), Postives = 80/154 (51.95%), Query Frame = 1 
Query:   46 PELYDKDLDDQDEVFVQAHYRGVPKSKPVPPQRHAQRQEGQHGEDKAQPSRFKSDAHLSCPACFDSVCLECQRHARYANQYRAMLVMNVTVDTDQVLVPRQXXXXXXXXXXXXPSGGYGAPPQEALHPVRCAGCGAELGVYEADEELYHFFNVI 507
            PELYD DLDD+DE ++                  A++++G+            SDA LSCPACF +VC ECQRH +Y  QYRA+ V+N  VD D+V  P                   G+   E L+PV CA C  E+GV +  EE+YHFFNVI
Sbjct:   23 PELYDSDLDDKDEQWM------------------AKKRDGR-----------TSDAVLSCPACFTTVCYECQRHEQYVTQYRAVFVVNCEVDKDRVFQPNAIPSKVGKRTRDSEKQETGSADNERLNPVFCATCSTEIGVVDI-EEIYHFFNVI 146
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BLAST of jgi.p|Trimin1|163245 vs. uniprot
Match: A0A2I4ECY9_JUGRE (E2F-associated phosphoprotein n=7 Tax=Juglandaceae TaxID=16714 RepID=A0A2I4ECY9_JUGRE)

HSP 1 Score: 103 bits (258), Expect = 4.360e-25
Identity = 59/154 (38.31%), Postives = 75/154 (48.70%), Query Frame = 1 
Query:   46 PELYDKDLDDQDEVFVQAHYRGVPKSKPVPPQRHAQRQEGQHGEDKAQPSRFKSDAHLSCPACFDSVCLECQRHARYANQYRAMLVMNVTVDTDQVLVPRQXXXXXXXXXXXXPSGGYGAPPQEALHPVRCAGCGAELGVYEADEELYHFFNVI 507
            PE YD DLDD+DEV+VQ   +G                               SDA LSCPACF ++CLE QRH +Y  QYRA+ VMN  V++DQV   +                  G    E LH V C+ C  E+G+ + DE +YHFFNV+
Sbjct:   34 PEFYDPDLDDKDEVWVQKRRKGR-----------------------------SSDAVLSCPACFTTLCLESQRHEKYVTQYRAVFVMNCKVNSDQVFAEKHPKPRKGKRGRTSGESESGFSGSETLHEVSCSACSTEVGIIDQDE-VYHFFNVL 157
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BLAST of jgi.p|Trimin1|163245 vs. uniprot
Match: C5XY72_SORBI (Uncharacterized protein n=1 Tax=Sorghum bicolor TaxID=4558 RepID=C5XY72_SORBI)

HSP 1 Score: 103 bits (257), Expect = 7.410e-25
Identity = 62/159 (38.99%), Postives = 79/159 (49.69%), Query Frame = 1 
Query:   43 DPELYDKDLDDQDEVFVQAHYRGVPKSKPVPPQRHAQRQEGQHGEDKAQPSRFKSDAHLSCPACFDSVCLECQRHARYANQYRAMLVMNVTVDTDQVLVPRQXXXXXXXXXXXXPS-GGYGAPPQEALHPVRCAGCGAELGVYEADEELYHFFNVIATS 516
            +PE YD DLDD DE +V    +G                               SDA LSCPACF ++CL+CQRH +Y NQYRAM V N  V TDQ+L   +            P+    G    +A HPV C  C  E+GV++ DE +YHFFNVI ++
Sbjct:   39 EPEFYDPDLDDVDERWVDRQRKGR-----------------------------TSDAVLSCPACFTTLCLDCQRHEKYVNQYRAMFVRNCKVKTDQILREGKSKRKNRKGRAANPTTASEGESKGQAYHPVCCDVCSTEVGVFDEDE-VYHFFNVIPSN 167
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BLAST of jgi.p|Trimin1|163245 vs. uniprot
Match: K3YW75_SETIT (Uncharacterized protein n=5 Tax=Paniceae TaxID=147428 RepID=K3YW75_SETIT)

HSP 1 Score: 102 bits (253), Expect = 2.950e-24
Identity = 61/159 (38.36%), Postives = 80/159 (50.31%), Query Frame = 1 
Query:   43 DPELYDKDLDDQDEVFVQAHYRGVPKSKPVPPQRHAQRQEGQHGEDKAQPSRFKSDAHLSCPACFDSVCLECQRHARYANQYRAMLVMNVTVDTDQVLVPRQXXXXXXXXXXXXPSGGYGAPPQ-EALHPVRCAGCGAELGVYEADEELYHFFNVIATS 516
            +PE YD DLDD DE ++    +G                               SDA LSCPACF ++C++CQRH +Y NQYRAM V N  V TDQ+L   +            PS    A  + +A HPV C  C  E+GV++ DE +YHFFNVI ++
Sbjct:   39 EPEFYDPDLDDVDERWMNRQRKG-----------------------------HTSDAVLSCPACFTTLCVDCQRHEKYVNQYRAMFVRNCKVKTDQILREGKSKRKNRKGKAAEPSTTSEAESKGQAYHPVCCEVCSTEVGVFDEDE-VYHFFNVIPSN 167
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BLAST of jgi.p|Trimin1|163245 vs. uniprot
Match: UPI001863C6D8 (E2F-associated phosphoprotein n=1 Tax=Megalops cyprinoides TaxID=118141 RepID=UPI001863C6D8)

HSP 1 Score: 104 bits (260), Expect = 4.770e-24
Identity = 66/170 (38.82%), Postives = 92/170 (54.12%), Query Frame = 1 
Query:   34 PRRDPELYDKDLDDQDEVFVQA---HYRGVPKSKPVPPQRHAQRQEGQHGEDKAQPSRFKSDAHLSCPACFDSVCLECQRHARYANQYRAMLVMNVTVDTDQVLVPRQXXXXXXXXXXXXPSG------GY-GAPPQEALHPVRCAGCGAELGVYEADEELYHFFNVIAT 513
            P  D  LYD D DD+D+ +V A    YRG  K          +    + G+ +A P+   SDA L+CPAC  ++CL+CQRH +Y  QYRAM VMN TV+ ++ L  R               G      G+  A P+E  HPVRC+ C  E+ V++ DE +YHFFN++A+
Sbjct:  139 PTNDELLYDPDKDDRDQAWVDAKRTEYRGSRKQ--------LRGSASREGKPQALPN---SDAVLNCPACMTTLCLDCQRHEKYRTQYRAMFVMNCTVNREEALRYRTPADGKWTNRRKRMKGHQQTEPGFVEAEPEETYHPVRCSECSTEVAVFDKDE-VYHFFNILAS 296
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|163245 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CF92_9STRA7.020e-113100.00E2F-associated phosphoprotein n=1 Tax=Tribonema mi... [more]
UPI001C4AB4422.610e-2640.25E2F-associated phosphoprotein-like n=2 Tax=Zingibe... [more]
A0A8J5F3A8_ZINOF5.640e-2640.25Uncharacterized protein n=1 Tax=Zingiber officinal... [more]
A0A8J5FB85_ZINOF1.660e-2539.24Uncharacterized protein n=1 Tax=Zingiber officinal... [more]
A0A3Q2NTH8_FUNHE3.220e-2539.08E2F associated phosphoprotein n=2 Tax=Fundulus het... [more]
A0A565CJ00_9BRAS3.240e-2540.26Uncharacterized protein n=1 Tax=Arabis nemorensis ... [more]
A0A2I4ECY9_JUGRE4.360e-2538.31E2F-associated phosphoprotein n=7 Tax=Juglandaceae... [more]
C5XY72_SORBI7.410e-2538.99Uncharacterized protein n=1 Tax=Sorghum bicolor Ta... [more]
K3YW75_SETIT2.950e-2438.36Uncharacterized protein n=5 Tax=Paniceae TaxID=147... [more]
UPI001863C6D84.770e-2438.82E2F-associated phosphoprotein n=1 Tax=Megalops cyp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_25contigContig_25:221144..221662 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|163245|e_gw1.25.20.1
GOsGO:0000122,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006355,GO:0006357,GO:0008150,GO:0008284,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0032784,GO:0032785,GO:0032786,GO:0032968,GO:0034243,GO:0034244,GO:0042127,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045944,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0060255,GO:0065007,GO:0080090,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:2000112,GO:2000113,GO:2001141
Preferred nameEAPP
DescriptionE2f-associated phosphoprotein
COG categoryS
Max annot lvl33208|Metazoa
EggNOG OGsKOG3395@1|root,KOG3395@2759|Eukaryota,39VIB@33154|Opisthokonta,3BJVG@33208|Metazoa,3CU9Z@33213|Bilateria,484T4@7711|Chordata,498JQ@7742|Vertebrata,49XD2@7898|Actinopterygii
Evalue1.11e-24
Seed ortholog69293.ENSGACP00000020718
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionE2F-associated phosphoprotein
Ec32 orthologEc-10_005350.1
TranscriptId163567
TrackFilteredModels1
ProteinId163245
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|163245gene_6616Tribonema minus UTEX_B_3156 geneContig_25 221144..221662 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6616_1exon_6616_1Tribonema minus UTEX_B_3156 exonContig_25 221144..221662 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6616CDS_6616Tribonema minus UTEX_B_3156 CDSContig_25 221144..221662 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|163245Trimin1|163245|e_gw1.25.20.1Tribonema minus UTEX_B_3156 polypeptideContig_25 221144..221662 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6616 ID=mRNA_6616|Name=jgi.p|Trimin1|163245|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=519bp|location=Sequence derived from alignment at Contig_25:221144..221662- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGACACGCACCCTCACACTCGCACCCTCCTGCCCGCGCCGCGATCCAGA
GCTATACGACAAGGACTTGGATGATCAGGACGAGGTGTTCGTGCAGGCGC
ACTACAGAGGCGTCCCCAAAAGCAAGCCGGTGCCGCCGCAGCGGCACGCC
CAGCGACAGGAGGGGCAACACGGCGAGGACAAGGCGCAGCCGTCGCGGTT
CAAGTCCGACGCGCACCTGAGCTGCCCCGCGTGCTTCGACAGCGTGTGCC
TCGAGTGCCAGCGCCACGCGCGCTACGCCAACCAGTACCGCGCCATGCTC
GTCATGAACGTGACGGTGGACACGGATCAGGTGCTGGTGCCGCGGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCGGCAGCAGCCGTCGGGCGGCTACG
GCGCGCCGCCGCAGGAGGCGCTGCACCCCGTGCGCTGCGCCGGCTGCGGC
GCGGAGCTCGGCGTGTACGAGGCGGATGAGGAGCTGTACCACTTCTTCAA
CGTGATCGCCACCTCGTGA
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protein sequence of jgi.p|Trimin1|163245

>Trimin1|163245|e_gw1.25.20.1 ID=Trimin1|163245|e_gw1.25.20.1|Name=jgi.p|Trimin1|163245|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=173bp
MTRTLTLAPSCPRRDPELYDKDLDDQDEVFVQAHYRGVPKSKPVPPQRHA
QRQEGQHGEDKAQPSRFKSDAHLSCPACFDSVCLECQRHARYANQYRAML
VMNVTVDTDQVLVPRQQQQQQQQQQRQQPSGGYGAPPQEALHPVRCAGCG
AELGVYEADEELYHFFNVIATS*
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mRNA from alignment at Contig_25:221144..221662-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6616 ID=mRNA_6616|Name=jgi.p|Trimin1|163245|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=519bp|location=Sequence derived from alignment at Contig_25:221144..221662- (Tribonema minus UTEX_B_3156 )
ATGACACGCACCCTCACACTCGCACCCTCCTGCCCGCGCCGCGATCCAGA
GCTATACGACAAGGACTTGGATGATCAGGACGAGGTGTTCGTGCAGGCGC
ACTACAGAGGCGTCCCCAAAAGCAAGCCGGTGCCGCCGCAGCGGCACGCC
CAGCGACAGGAGGGGCAACACGGCGAGGACAAGGCGCAGCCGTCGCGGTT
CAAGTCCGACGCGCACCTGAGCTGCCCCGCGTGCTTCGACAGCGTGTGCC
TCGAGTGCCAGCGCCACGCGCGCTACGCCAACCAGTACCGCGCCATGCTC
GTCATGAACGTGACGGTGGACACGGATCAGGTGCTGGTGCCGCGGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCGGCAGCAGCCGTCGGGCGGCTACG
GCGCGCCGCCGCAGGAGGCGCTGCACCCCGTGCGCTGCGCCGGCTGCGGC
GCGGAGCTCGGCGTGTACGAGGCGGATGAGGAGCTGTACCACTTCTTCAA
CGTGATCGCCACCTCGTGA
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Coding sequence (CDS) from alignment at Contig_25:221144..221662-

>mRNA_6616 ID=mRNA_6616|Name=jgi.p|Trimin1|163245|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=519bp|location=Sequence derived from alignment at Contig_25:221144..221662- (Tribonema minus UTEX_B_3156 )
ATGACACGCACCCTCACACTCGCACCCTCCTGCCCGCGCCGCGATCCAGA
GCTATACGACAAGGACTTGGATGATCAGGACGAGGTGTTCGTGCAGGCGC
ACTACAGAGGCGTCCCCAAAAGCAAGCCGGTGCCGCCGCAGCGGCACGCC
CAGCGACAGGAGGGGCAACACGGCGAGGACAAGGCGCAGCCGTCGCGGTT
CAAGTCCGACGCGCACCTGAGCTGCCCCGCGTGCTTCGACAGCGTGTGCC
TCGAGTGCCAGCGCCACGCGCGCTACGCCAACCAGTACCGCGCCATGCTC
GTCATGAACGTGACGGTGGACACGGATCAGGTGCTGGTGCCGCGGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCGGCAGCAGCCGTCGGGCGGCTACG
GCGCGCCGCCGCAGGAGGCGCTGCACCCCGTGCGCTGCGCCGGCTGCGGC
GCGGAGCTCGGCGTGTACGAGGCGGATGAGGAGCTGTACCACTTCTTCAA
CGTGATCGCCACCTCGTGA
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