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Homology
BLAST of jgi.p|Trimin1|348461 vs. uniprot
Match: A0A836CG61_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG61_9STRA) HSP 1 Score: 461 bits (1185), Expect = 1.790e-159 Identity = 336/336 (100.00%), Postives = 336/336 (100.00%), Query Frame = 1
Query: 1 MEKPMWERARITCGATKSGASSWRAADAHRAHARATALAELTLHGGDGSEDDSRSQSEASGVDGALQGAAAARGARGSPHSSNLGGRSVRSLSRMLLRQVRKAAAAAALIVGGFATRRACAMAESDTDGSAGATGNASSGIALAGGASSDGSAARAMSRATLTSPSSXXXXXXXGTSLAEALAQLDGMHAGQQRSATGGSIPQSPTIDVAAANAXXXXXXXXXXXXXXXXXXXXXAQQEKDRRGDGKAQSPSGVSTRSSLSRKQHRWRSETSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGASRGTRVLIKSEQDETAGWYSAEAAGRG 1008
MEKPMWERARITCGATKSGASSWRAADAHRAHARATALAELTLHGGDGSEDDSRSQSEASGVDGALQGAAAARGARGSPHSSNLGGRSVRSLSRMLLRQVRKAAAAAALIVGGFATRRACAMAESDTDGSAGATGNASSGIALAGGASSDGSAARAMSRATLTSPSSXXXXXXXGTSLAEALAQLDGMHAGQQRSATGGSIPQSPTIDVAAANAXXXXXXXXXXXXXXXXXXXXXAQQEKDRRGDGKAQSPSGVSTRSSLSRKQHRWRSETSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGASRGTRVLIKSEQDETAGWYSAEAAGRG
Sbjct: 1 MEKPMWERARITCGATKSGASSWRAADAHRAHARATALAELTLHGGDGSEDDSRSQSEASGVDGALQGAAAARGARGSPHSSNLGGRSVRSLSRMLLRQVRKAAAAAALIVGGFATRRACAMAESDTDGSAGATGNASSGIALAGGASSDGSAARAMSRATLTSPSSXXXXXXXGTSLAEALAQLDGMHAGQQRSATGGSIPQSPTIDVAAANAXXXXXXXXXXXXXXXXXXXXXAQQEKDRRGDGKAQSPSGVSTRSSLSRKQHRWRSETSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGASRGTRVLIKSEQDETAGWYSAEAAGRG 336
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | Trimin1|348461|estExt_Genemark1.C_Ctg_250018 |
| Hectar predicted targeting category | other localisation |
| TranscriptId | 348783 |
| Track | FilteredModels1 |
| ProteinId | 348461 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_6615 ID=mRNA_6615|Name=jgi.p|Trimin1|348461|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1204bp|location=Sequence derived from alignment at Contig_25:213294..216731+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.
ATGGAGAAGCCGATGTGGGAGCGCGCGCGCATAACGTGCGGTGCCACAAA
GAGCGGCGCGTCGAGCTGGCGCGCCGCCGATGCGCACCGCGCGCACGCGC
GCGCCACCGCGCTCGCCGAGCTCACCCTCCACGGCGGCGACGGCTCGGAG
GACGACTCGCGCAGCCAGTCGGAGGCGTCGGGCGTGGACGGGGCGCTGCA
GGGCGCCGCGGCGGCGCGCGGCGCGCGCGGGTCGCCGCACTCCAGCAACC
TCGGCGGGCGCAGCGTGCGCTCGCTGTCGCGCATGCTGCTGCGGCAGGTG
AGAAAGGCAGCGGCGGCGGCGGCGCTGATTGTCGGCGGTTTCGCCACGCG
GCGTGCGTGCGCCATGGCCGAGTCGGACACGGACGGCAGCGCGGGCGCGA
CGGGCAACGCGTCCAGCGGCATCGCGCTCGCGGGCGGCGCGTCGTCGGAC
GGCTCGGCGGCGCGCGCCATGTCGCGCGCGACGCTCACGTCGCCGTCCAG
CGGCGGCGGGCGCTCGTCGCGCGGGACGAGCCTCGCGGAGGCGCTCGCGC
AGCTCGACGGCATGCACGCGGGGCAGCAGCGCTCAGCCACGGGCGGCAGC
ATCCCGCAGAGCCCGACGATCGACGTCGCGGCCGCCAACGCCGCCGCCGC
CGGCGGCGCCAGCGGCGGCGCGCTCACGGCGTCCGCGCTCGCGGCGGCAG
ACGCGGCGCAGCAGGAGAAGGACCGGCGCGGCGACGGCAAGGCGCAGTCG
CCTTCGGGCGTGTCCACGCGCAGCTCGCTGTCGCGCAAGCAGCACCGCTG
GCGCAGCGAGACGAGCTCCGCGGCAGGCGGGGGCGGCCAGGAGGTTCTGC
GGCGATGGCGGCGGCGCGGCGGGAGGCGCAGCAGCCGCGGCGACGACGCG
GCGGCGGCGCAGCGGCGGCGCGGCGCGAGCAGGGGCACGCGCGTGCTGAT
CAAATCGGAACAGGATGAAACAGCAGGGTGGTACTCTGCGGAAGCGGCGG
GAAGGGGCTGATGCGTGCGCGCTCAGTATCCCCCGTGCAGTGCAAGTGCG
CACAGCAGCAGCAACAGCGCAGTGGTGGTATAGTGGTAACATAGTGGAGA
CATGGCAGGCGGGGTGCGTGTTTGTATTTCCGCAATGCGGTGCCTGCCGG
GCTGGGGACGATATGCGTGTGTGTATGTGTGTGCAGGGGGAGACAAGGGG
GCGC back to topprotein sequence of jgi.p|Trimin1|348461 >Trimin1|348461|estExt_Genemark1.C_Ctg_250018 ID=Trimin1|348461|estExt_Genemark1.C_Ctg_250018|Name=jgi.p|Trimin1|348461|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=337bp
MEKPMWERARITCGATKSGASSWRAADAHRAHARATALAELTLHGGDGSE
DDSRSQSEASGVDGALQGAAAARGARGSPHSSNLGGRSVRSLSRMLLRQV
RKAAAAAALIVGGFATRRACAMAESDTDGSAGATGNASSGIALAGGASSD
GSAARAMSRATLTSPSSGGGRSSRGTSLAEALAQLDGMHAGQQRSATGGS
IPQSPTIDVAAANAAAAGGASGGALTASALAAADAAQQEKDRRGDGKAQS
PSGVSTRSSLSRKQHRWRSETSSAAGGGGQEVLRRWRRRGGRRSSRGDDA
AAAQRRRGASRGTRVLIKSEQDETAGWYSAEAAGRG* back to topmRNA from alignment at Contig_25:213294..216731+ Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_6615 ID=mRNA_6615|Name=jgi.p|Trimin1|348461|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3438bp|location=Sequence derived from alignment at Contig_25:213294..216731+ (Tribonema minus UTEX_B_3156 )
ATGGAGAAGCCGATGTGGGAGCGCGCGCGCATAACGTGCGGTGCCACAAA
GAGCGGCGCGTCGAGCTGGCGGTGCGACCGAATCGGACGCGCTGAGCGTT
GCGCGAGGATACGGCTGACTGACTGGGGGCCTCAGTGGTCACCTCACGCT
GCAGATGCGCGCAGCGCTCCTGGTGGCTTGGCATCGACGCGCGCTTGCGG
TCGCTCGCAGCCACCACTTGCGTCGCTCAGCACTGCCTCGACCGCGCGCG
CTACTCAGTAACGCGCCATCTCACACACACACCCTCCCCCCCCCCCCCCC
CACGCGCGCAGCGCCGCCGATGCGCACCGCGCGCACGCGCGCGCCACCGC
GCTCGCCGAGCTCACCCTCCACGGCGGCGACGGCTCGGAGGACGACTCGC
GCAGCCAGTCGGAGGCGTCGGGCGTGGACGGGGCGCTGCAGGGCGCCGCG
GCGGCGCGCGGCGCGCGCGGGTCGCCGCACTCCAGCAACCTCGGCGGGCG
CAGCGTGCGCTCGCTGTCGCGCATGCTGCTGCGGCAGGTGAGCTTCTCAC
GAGCAGCATGAGGCGCGAGGGATTGGCTAAGTACCAGTTGCGCTCCAACT
GGTGGTGCTCTGCCAGGAACGCTGCGAGTCCGGTGCCGCCGGGTGTGGGT
GAGAACCGGGCTTGCTTGGCGCCGACGCCCTGTCTGCTGTGGCATAGGTG
TGTGACCGCAGATACTGGGGTACGCACCTCCTGAGGGACGCGGCGGCGGC
GCTGCTCGCTGTCGTGCATGCTGCTGCGGCAGGTGAGAAAGGCAGCGGCG
GCGGCGGCGCTGATTGTCGGCGGTTTCGCCACGCGGCGTGCGTGCGTGCG
TGCTTTCCTGTGCTACGGTCTCGTGGCTTTTCGCGAGTGCTTTGCGCGAA
CAGCAGGGGGGGGGGGGGGAGGCGGGGGGGAGGAGTCGCACGCCGTCGCA
GTTTGCGCCGATCCGATGAGATACACAGACGGGCGTCTGACGGGCGCGCT
CTTGATTGCGCACCCAGTAGCTACGTGCGACAACCGCACAAAGGGCGGCA
GCTACAACCTGCACACAACACACGCGCATAAGCGCGGCAAATGCACAGGG
CACGAACAGCCCCAAGCCGACAACCGGCAGACTCAAATACCTCAAAGTAT
ACGGTTGTTCTGATGCCTCCCCCTCCCCCCCCCATCCGACGCCCCCCCCT
GCCCCAGGCCATGGCCGAGTCGGACACGGACGGCAGCGCGGGCGCGACGG
GCAACGCGTCCAGCGGCATCGCGCTCGCGGGCGGCGCGTCGTCGGACGGC
TCGGCGGCGCGCGCCATGTCGCGCGCGACGCTCACGTCGCCGTCCAGCGG
CGGCGGGCGCTCGTCGCGCGGGACGAGCCTCGCGGAGGCGCTCGCGCAGC
TCGACGGCATGCACGCGGGGCAGCAGCGCTCAGGTGCGTGCCGCAGCGCT
CAGCGTTGTGGTTGTCGTATCAGTGTGTGTGTGTGTGAGTGTGTGCGCGG
GACGAGCCTCGCGGAGGCGCTCGCGCAGCTCGACGGCATGCACGCGGGGC
AACAGCGCTCAGGTGCCTGTTGCGGCGCGCAATGCTCAGCTTGGTGGTTG
TCTCATTAGTGTGAATGTGTGGGGGGGGGGTCCTTGGAGGCACCGGGGGG
CGTGGCGGCGTCGCATCAGAGTGTTTGCGTGTGTGTGTGTGTATCTTGGG
GGGAGGGGGGGTGCCACCGGGCGGCGTGGCGGCGCGCTGGCGGCAGTCGC
GAGTTGCTGGCTGCACTGGTGCGCAGTGGCGTGTCTGTGCCTCTGCAGTG
CCAAGGCAGCAGCAGCGGTCAGGGCTCTGCAAAGCCCCATGCAGTCTGGT
CACGGTGGAGCCAATCACAAGAGGGCATGGCGTAAGCATGCGGCACAGCG
GTGTGTGCGGGGCAGCTGCGGTCTCACGTGCGCCGTAAGCCGACAATATC
TGACACACAGCATCTGAGCTACATAACTACGTTGCATACCCATGTAGGGT
CAGGGATGTTCAGTGGCGCAGCCACAAGGCGCGCGTGGGGACAGGACCGC
AAACCCTGGCTGAGGCGCGCCCTGCGCAAGCCGAGCGATGTCACAGCCCG
CAGTTGCGACTGTGGTGAGGGTTCGAGCGCCAGCGCGCTGTGCGCACGAC
ACCGCGCCGTCACCATGGCACCTCCTGCGCTGCCGCAGGGCGCAGCAGCA
TGGCACCGACTGACACCTCCCTACTGCCAGCGGCCGCTGTGGCCGCGTGC
ACTCGCCTGCCCCCTCAGATTCTGCCCATATGCTACGTGTTGCACAGCTC
TAACGCACGCGACTGCGCTGCCGCCGCTCACACGCTGCAGCCACGGGCGG
CAGCATCCCGCAGAGCCCGACGATCGACGTCGCGGCCGCCAACGCCGCCG
CCGCCGGCGGCGCCAGCGGCGGCGCGCTCACGGCGTCCGCGCTCGCGGCG
GCAGACGCGGCGCAGCAGGAGAAGGACCGGCGCGGCGACGGCAAGGCGCA
GTCGCCTTCGGGCGTGTCCACGCGCAGCTCGCTGTCGCGCAAGCAGCACC
GCTGGCGCAGCGAGACGAGCTCCGCGGTGAGCAGCAGCAGCGAGTCCGGC
GATGACGCGGTGTAGGCAGGCGGGGGCGGCCAGGAGGTTCTGCGGCGATG
GCGGCGGCGCGGCGGGAGGCGCAGCAGCCGCGGCGACGACGCGGCGGCGG
CGCAGCGGCGGCGCGGCGCGAGCAGGGGCACGCGCGTGCTGATCAAATCG
GAACAGGTGCTATGCCTGAGGGGGGGAATTAAGGGTGTATGAGGGGCGCG
GGAGGCACACGCCGCCGCTGGCAGGCAAGCTGCTTACACGGACGTGTGAT
GCGCACCGCCGTTCGACAGCTGCGGTGCGGGGGCGCACAGCAGCGGCGGC
ACACATCGGCATTGGCGCAAGGGCCCTCCGCCTGTGCGCAGCATACACAC
ACTCCCTTTCTCTCTACTGCTGCTCGATGACACGGCGGCGCGGGGCGCAC
CACGCCCCTGCGCGCCGTCTTTTGATTACCACAGCGCACTTGTGCGGAGT
GCGGCGGCGGTACACTTCAAGTTTATGTAGAGGAAGGGGGGGGGCGTGGG
GGGGGCATATTTGAAGACAGAAGGGCAGGTGCAGGTGATGGGAGGGGGAG
GGGGGGGTCTAGCGCGCGCCTTTGCGGCGCGGCCCGATATGCAACAGGAT
GAAACAGCAGGGTGGTACTCTGCGGAAGCGGCGGGAAGGGGCTGATGCGT
GCGCGCTCAGTATCCCCCGTGCAGTGCAAGTGCGCACAGCAGCAGCAACA
GCGCAGTGGTGGTATAGTGGTAACATAGTGGAGACATGGCAGGCGGGGTG
CGTGTTTGTATTTCCGCAATGCGGTGCCTGCCGGGCTGGGGACGATATGC
GTGTGTGTATGTGTGTGCAGGGGGAGACAAGGGGGCGC back to topCoding sequence (CDS) from alignment at Contig_25:213294..216731+ >mRNA_6615 ID=mRNA_6615|Name=jgi.p|Trimin1|348461|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1011bp|location=Sequence derived from alignment at Contig_25:213294..216731+ (Tribonema minus UTEX_B_3156 )
ATGGAGAAGCCGATGTGGGAGCGCGCGCGCATAACGTGCGGTGCCACAAA
GAGCGGCGCGTCGAGCTGGCGCGCCGCCGATGCGCACCGCGCGCACGCGC
GCGCCACCGCGCTCGCCGAGCTCACCCTCCACGGCGGCGACGGCTCGGAG
GACGACTCGCGCAGCCAGTCGGAGGCGTCGGGCGTGGACGGGGCGCTGCA
GGGCGCCGCGGCGGCGCGCGGCGCGCGCGGGTCGCCGCACTCCAGCAACC
TCGGCGGGCGCAGCGTGCGCTCGCTGTCGCGCATGCTGCTGCGGCAGGTG
AGAAAGGCAGCGGCGGCGGCGGCGCTGATTGTCGGCGGTTTCGCCACGCG
GCGTGCGTGCGCCATGGCCGAGTCGGACACGGACGGCAGCGCGGGCGCGA
CGGGCAACGCGTCCAGCGGCATCGCGCTCGCGGGCGGCGCGTCGTCGGAC
GGCTCGGCGGCGCGCGCCATGTCGCGCGCGACGCTCACGTCGCCGTCCAG
CGGCGGCGGGCGCTCGTCGCGCGGGACGAGCCTCGCGGAGGCGCTCGCGC
AGCTCGACGGCATGCACGCGGGGCAGCAGCGCTCAGCCACGGGCGGCAGC
ATCCCGCAGAGCCCGACGATCGACGTCGCGGCCGCCAACGCCGCCGCCGC
CGGCGGCGCCAGCGGCGGCGCGCTCACGGCGTCCGCGCTCGCGGCGGCAG
ACGCGGCGCAGCAGGAGAAGGACCGGCGCGGCGACGGCAAGGCGCAGTCG
CCTTCGGGCGTGTCCACGCGCAGCTCGCTGTCGCGCAAGCAGCACCGCTG
GCGCAGCGAGACGAGCTCCGCGGCAGGCGGGGGCGGCCAGGAGGTTCTGC
GGCGATGGCGGCGGCGCGGCGGGAGGCGCAGCAGCCGCGGCGACGACGCG
GCGGCGGCGCAGCGGCGGCGCGGCGCGAGCAGGGGCACGCGCGTGCTGAT
CAAATCGGAACAGGATGAAACAGCAGGGTGGTACTCTGCGGAAGCGGCGG
GAAGGGGCTGA back to top
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