mRNA_660 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|156987
Unique NamemRNA_660
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|156987 vs. uniprot
Match: A0A836CI23_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI23_9STRA)

HSP 1 Score: 167 bits (423), Expect = 3.180e-50
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 1 
Query:    1 MLYTRYHCPLNAHTVVVAIIYKHLSTLQWLRAVGCDWDTRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKFPWGPSTTDAAVQRGHKEFFLWALHQGCKCNVITRRTAVKLKWIL 480
            MLYTRYHCPLNAHTVVVAIIYKHLSTLQWLRAVGCDWDTRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKFPWGPSTTDAAVQRGHKEFFLWALHQGCKCNVITRRTAVKLKWIL
Sbjct:    1 MLYTRYHCPLNAHTVVVAIIYKHLSTLQWLRAVGCDWDTRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKFPWGPSTTDAAVQRGHKEFFLWALHQGCKCNVITRRTAVKLKWIL 160
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|156987 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CI23_9STRA3.180e-50100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_2contigContig_2:1069374..1069856 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|156987|e_gw1.2.1.1
Hectar predicted targeting categoryother localisation
TranscriptId157309
TrackFilteredModels1
ProteinId156987
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|156987gene_660Tribonema minus UTEX_B_3156 geneContig_2 1069374..1069856 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_660_1exon_660_1Tribonema minus UTEX_B_3156 exonContig_2 1069374..1069856 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_660CDS_660Tribonema minus UTEX_B_3156 CDSContig_2 1069374..1069856 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|156987Trimin1|156987|e_gw1.2.1.1Tribonema minus UTEX_B_3156 polypeptideContig_2 1069374..1069856 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_660 ID=mRNA_660|Name=jgi.p|Trimin1|156987|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=483bp|location=Sequence derived from alignment at Contig_2:1069374..1069856- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGTACACACGGTATCATTGCCCATTGAATGCGCACACAGTCGTGGT
GGCTATCATTTACAAGCACCTGTCGACACTTCAGTGGCTGCGCGCAGTAG
GGTGTGACTGGGACACAAGGGCATTTGTTGTCGCCATCAATCAGAAGAGT
CTTGCACTGGTGCAATGGTTACATGCGCACAAGTGTCCTTGGGATGCGCG
CGCCTACGTTGCGGCGATAGGTGCAGAGAGTTTGGAGATCTTACATTATC
TTCATCAGAACGGCTGCCCTGCCGACGAAACGGTGTGCGCTGCAACAGCG
AGGGAGAATTCTGTCGTGCTCCTGCAATGGCTTCACAAGCGCAAATTTCC
CTGGGGGCCAAGCACAACAGATGCAGCGGTGCAGCGCGGCCACAAGGAAT
TTTTTCTTTGGGCGCTGCATCAGGGGTGCAAGTGCAATGTCATCACACGA
CGCACAGCAGTCAAATTAAAATGGATACTTTGA
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protein sequence of jgi.p|Trimin1|156987

>Trimin1|156987|e_gw1.2.1.1 ID=Trimin1|156987|e_gw1.2.1.1|Name=jgi.p|Trimin1|156987|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=161bp
MLYTRYHCPLNAHTVVVAIIYKHLSTLQWLRAVGCDWDTRAFVVAINQKS
LALVQWLHAHKCPWDARAYVAAIGAESLEILHYLHQNGCPADETVCAATA
RENSVVLLQWLHKRKFPWGPSTTDAAVQRGHKEFFLWALHQGCKCNVITR
RTAVKLKWIL*
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mRNA from alignment at Contig_2:1069374..1069856-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_660 ID=mRNA_660|Name=jgi.p|Trimin1|156987|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=483bp|location=Sequence derived from alignment at Contig_2:1069374..1069856- (Tribonema minus UTEX_B_3156 )
ATGCTGTACACACGGTATCATTGCCCATTGAATGCGCACACAGTCGTGGT
GGCTATCATTTACAAGCACCTGTCGACACTTCAGTGGCTGCGCGCAGTAG
GGTGTGACTGGGACACAAGGGCATTTGTTGTCGCCATCAATCAGAAGAGT
CTTGCACTGGTGCAATGGTTACATGCGCACAAGTGTCCTTGGGATGCGCG
CGCCTACGTTGCGGCGATAGGTGCAGAGAGTTTGGAGATCTTACATTATC
TTCATCAGAACGGCTGCCCTGCCGACGAAACGGTGTGCGCTGCAACAGCG
AGGGAGAATTCTGTCGTGCTCCTGCAATGGCTTCACAAGCGCAAATTTCC
CTGGGGGCCAAGCACAACAGATGCAGCGGTGCAGCGCGGCCACAAGGAAT
TTTTTCTTTGGGCGCTGCATCAGGGGTGCAAGTGCAATGTCATCACACGA
CGCACAGCAGTCAAATTAAAATGGATACTTTGA
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Coding sequence (CDS) from alignment at Contig_2:1069374..1069856-

>mRNA_660 ID=mRNA_660|Name=jgi.p|Trimin1|156987|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=483bp|location=Sequence derived from alignment at Contig_2:1069374..1069856- (Tribonema minus UTEX_B_3156 )
ATGCTGTACACACGGTATCATTGCCCATTGAATGCGCACACAGTCGTGGT
GGCTATCATTTACAAGCACCTGTCGACACTTCAGTGGCTGCGCGCAGTAG
GGTGTGACTGGGACACAAGGGCATTTGTTGTCGCCATCAATCAGAAGAGT
CTTGCACTGGTGCAATGGTTACATGCGCACAAGTGTCCTTGGGATGCGCG
CGCCTACGTTGCGGCGATAGGTGCAGAGAGTTTGGAGATCTTACATTATC
TTCATCAGAACGGCTGCCCTGCCGACGAAACGGTGTGCGCTGCAACAGCG
AGGGAGAATTCTGTCGTGCTCCTGCAATGGCTTCACAAGCGCAAATTTCC
CTGGGGGCCAAGCACAACAGATGCAGCGGTGCAGCGCGGCCACAAGGAAT
TTTTTCTTTGGGCGCTGCATCAGGGGTGCAAGTGCAATGTCATCACACGA
CGCACAGCAGTCAAATTAAAATGGATACTTTGA
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