mRNA_6599 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|163350
Unique NamemRNA_6599
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|163350 vs. uniprot
Match: A0A836CGF4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGF4_9STRA)

HSP 1 Score: 157 bits (396), Expect = 1.160e-48
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 1 
Query:    1 LLAQEAARRLGHNIKLVGIQQIFFLVFYGKGPGAVFKVSKSVGVKTKCTLEVALFEIGRRSGFVGVRIPFTLHECTS 231
            LLAQEAARRLGHNIKLVGIQQIFFLVFYGKGPGAVFKVSKSVGVKTKCTLEVALFEIGRRSGFVGVRIPFTLHECTS
Sbjct:    1 LLAQEAARRLGHNIKLVGIQQIFFLVFYGKGPGAVFKVSKSVGVKTKCTLEVALFEIGRRSGFVGVRIPFTLHECTS 77
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BLAST of jgi.p|Trimin1|163350 vs. uniprot
Match: A0A8K0I653_COCNU (ATP-dependent Clp protease ATP-binding subunit ClpA, chloroplastic n=1 Tax=Cocos nucifera TaxID=13894 RepID=A0A8K0I653_COCNU)

HSP 1 Score: 61.2 bits (147), Expect = 3.810e-9
Identity = 38/71 (53.52%), Postives = 43/71 (60.56%), Query Frame = 1 
Query:    1 LLAQEAARRLGHNIKLVGIQQIFFLVFYGKGPGAVFKVSKSVGVKTKCTLEVALFEIGRRSGFVGVRIPFT 213
            +LAQE ARRLGHN   VG +QIF L   G+G G   KV KS+G+  K         IGR SGFV V IPFT
Sbjct:   98 MLAQEEARRLGHNF--VGTEQIF-LGLVGEGTGIAAKVLKSLGISLKDARAEVEKIIGRGSGFVAVEIPFT 165
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BLAST of jgi.p|Trimin1|163350 vs. uniprot
Match: A0A520LKX1_9SYNE (ATP-dependent Clp protease ATP-binding subunit ClpC (Fragment) n=2 Tax=Cyanobacteria TaxID=1117 RepID=A0A520LKX1_9SYNE)

HSP 1 Score: 59.3 bits (142), Expect = 5.170e-9
Identity = 40/72 (55.56%), Postives = 45/72 (62.50%), Query Frame = 1 
Query:    1 LLAQEAARRLGHNIKLVGIQQIFFLVFYGKGPGAVFKVSKSVGVKTK-CTLEVALFEIGRRSGFVGVRIPFT 213
            +LAQE ARRLGHN   VG +QI  L   G+G G   KV KS+GV  K   +EV    IGR SGFV V IPFT
Sbjct:   14 MLAQEEARRLGHNF--VGTEQIL-LGLIGEGTGVAAKVLKSMGVNLKDARVEVEKI-IGRGSGFVAVEIPFT 81
[Close]
BLAST of jgi.p|Trimin1|163350 vs. uniprot
Match: A9BB17_PROM4 (ClpC n=12 Tax=Cyanobacteria TaxID=1117 RepID=A9BB17_PROM4)

HSP 1 Score: 60.8 bits (146), Expect = 5.200e-9
Identity = 39/71 (54.93%), Postives = 43/71 (60.56%), Query Frame = 1 
Query:    1 LLAQEAARRLGHNIKLVGIQQIFFLVFYGKGPGAVFKVSKSVGVKTKCTLEVALFEIGRRSGFVGVRIPFT 213
            +LAQE ARRLGHN   VG +QI  L   G+G G   KV KSVGV  K +       IGR SGFV V IPFT
Sbjct:   14 MLAQEEARRLGHNF--VGTEQIL-LGLIGEGTGVAAKVLKSVGVNLKDSRVEVEKIIGRGSGFVAVEIPFT 81
[Close]
BLAST of jgi.p|Trimin1|163350 vs. uniprot
Match: A0A2Z7CGQ1_9LAMI (Uncharacterized protein n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7CGQ1_9LAMI)

HSP 1 Score: 60.8 bits (146), Expect = 5.210e-9
Identity = 37/71 (52.11%), Postives = 44/71 (61.97%), Query Frame = 1 
Query:    1 LLAQEAARRLGHNIKLVGIQQIFFLVFYGKGPGAVFKVSKSVGVKTKCTLEVALFEIGRRSGFVGVRIPFT 213
            +LAQE ARRLGHN+  VG +QI  L   G+G G   KV KS+G+  K +       IGR SGFV V IPFT
Sbjct:  105 MLAQEEARRLGHNV--VGTEQIL-LGLIGEGTGIAAKVLKSIGINLKDSRVEVEKLIGRGSGFVAVEIPFT 172
[Close]
BLAST of jgi.p|Trimin1|163350 vs. uniprot
Match: A0A1D1YRY2_9ARAE (ATP-dependent Clp protease ATP-binding subunit clpA CD4A, chloroplastic n=5 Tax=Liliopsida TaxID=4447 RepID=A0A1D1YRY2_9ARAE)

HSP 1 Score: 60.8 bits (146), Expect = 5.210e-9
Identity = 40/72 (55.56%), Postives = 46/72 (63.89%), Query Frame = 1 
Query:    1 LLAQEAARRLGHNIKLVGIQQIFFLVFYGKGPGAVFKVSKSVGVKTK-CTLEVALFEIGRRSGFVGVRIPFT 213
            +LAQE ARRLGHN   VG +QIF L   G+G G   KV KS+G+  K   +EV    IGR SGFV V IPFT
Sbjct:  104 MLAQEEARRLGHNF--VGTEQIF-LGLIGEGTGIAAKVLKSMGINLKDARVEVEKI-IGRGSGFVAVEIPFT 171
[Close]
BLAST of jgi.p|Trimin1|163350 vs. uniprot
Match: A0A151R678_CAJCA (Clp R domain-containing protein n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151R678_CAJCA)

HSP 1 Score: 58.5 bits (140), Expect = 8.450e-9
Identity = 39/72 (54.17%), Postives = 45/72 (62.50%), Query Frame = 1 
Query:    1 LLAQEAARRLGHNIKLVGIQQIFFLVFYGKGPGAVFKVSKSVGVKTK-CTLEVALFEIGRRSGFVGVRIPFT 213
            +LAQE ARRLGHN   VG +QI  L   G+G G   KV KS+G+  K   +EV    IGR SGFV V IPFT
Sbjct:   70 MLAQEEARRLGHNF--VGTEQIL-LGLIGEGTGIAAKVLKSMGINLKDARVEVEKI-IGRGSGFVAVEIPFT 137
[Close]
BLAST of jgi.p|Trimin1|163350 vs. uniprot
Match: A0A1Z9J505_9SYNE (ATP-dependent Clp protease ATP-binding subunit ClpC (Fragment) n=1 Tax=Synechococcus sp. TMED169 TaxID=1986593 RepID=A0A1Z9J505_9SYNE)

HSP 1 Score: 59.3 bits (142), Expect = 8.970e-9
Identity = 40/72 (55.56%), Postives = 45/72 (62.50%), Query Frame = 1 
Query:    1 LLAQEAARRLGHNIKLVGIQQIFFLVFYGKGPGAVFKVSKSVGVKTK-CTLEVALFEIGRRSGFVGVRIPFT 213
            +LAQE ARRLGHN   VG +QI  L   G+G G   KV KS+GV  K   +EV    IGR SGFV V IPFT
Sbjct:   14 MLAQEEARRLGHNF--VGTEQIL-LGLIGEGTGVAAKVLKSMGVNLKDARVEVEKI-IGRGSGFVAVEIPFT 81
[Close]
BLAST of jgi.p|Trimin1|163350 vs. uniprot
Match: A0A2T2RUY1_9CYAN (ATP-dependent Clp protease ATP-binding subunit ClpC n=1 Tax=Cyanobacteria bacterium QH_9_48_43 TaxID=1919126 RepID=A0A2T2RUY1_9CYAN)

HSP 1 Score: 60.1 bits (144), Expect = 9.700e-9
Identity = 40/72 (55.56%), Postives = 45/72 (62.50%), Query Frame = 1 
Query:    1 LLAQEAARRLGHNIKLVGIQQIFFLVFYGKGPGAVFKVSKSVGVKTK-CTLEVALFEIGRRSGFVGVRIPFT 213
            +LAQE ARRLGHN   VG +QI  L   G+G G   KV KS+GV  K   +EV    IGR SGFV V IPFT
Sbjct:   14 MLAQEEARRLGHNF--VGTEQIL-LGLIGEGTGVAAKVMKSMGVNLKDARIEVEKI-IGRGSGFVAVEIPFT 81
[Close]
BLAST of jgi.p|Trimin1|163350 vs. uniprot
Match: A0A0K9P691_ZOSMR (Chaperone protein ClpB 1 n=1 Tax=Zostera marina TaxID=29655 RepID=A0A0K9P691_ZOSMR)

HSP 1 Score: 60.1 bits (144), Expect = 9.730e-9
Identity = 37/71 (52.11%), Postives = 43/71 (60.56%), Query Frame = 1 
Query:    1 LLAQEAARRLGHNIKLVGIQQIFFLVFYGKGPGAVFKVSKSVGVKTKCTLEVALFEIGRRSGFVGVRIPFT 213
            +LAQE ARRLGHN   VG +QI  L   G+G G   KV KS+G+  K   +     IGR SGFV V IPFT
Sbjct:  102 MLAQEEARRLGHNF--VGTEQIL-LGLIGEGTGIAAKVLKSMGINLKDARQEVEKIIGRGSGFVAVEIPFT 169
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|163350 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CGF4_9STRA1.160e-48100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A8K0I653_COCNU3.810e-953.52ATP-dependent Clp protease ATP-binding subunit Clp... [more]
A0A520LKX1_9SYNE5.170e-955.56ATP-dependent Clp protease ATP-binding subunit Clp... [more]
A9BB17_PROM45.200e-954.93ClpC n=12 Tax=Cyanobacteria TaxID=1117 RepID=A9BB1... [more]
A0A2Z7CGQ1_9LAMI5.210e-952.11Uncharacterized protein n=1 Tax=Dorcoceras hygrome... [more]
A0A1D1YRY2_9ARAE5.210e-955.56ATP-dependent Clp protease ATP-binding subunit clp... [more]
A0A151R678_CAJCA8.450e-954.17Clp R domain-containing protein n=1 Tax=Cajanus ca... [more]
A0A1Z9J505_9SYNE8.970e-955.56ATP-dependent Clp protease ATP-binding subunit Clp... [more]
A0A2T2RUY1_9CYAN9.700e-955.56ATP-dependent Clp protease ATP-binding subunit Clp... [more]
A0A0K9P691_ZOSMR9.730e-952.11Chaperone protein ClpB 1 n=1 Tax=Zostera marina Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_25contigContig_25:70316..70549 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|163350|e_gw1.25.5.1
BRITEko00000,ko03110
KEGG Pathwayko01100,map01100
KEGG koko:K03696
Preferred nameclpC
DescriptionBelongs to the ClpA ClpB family
COG categoryO
Max annot lvl1117|Cyanobacteria
EggNOG OGsCOG0542@1|root,COG0542@2|Bacteria,1G0ZH@1117|Cyanobacteria,1MKI5@1212|Prochloraceae
Evalue8.52e-10
Seed ortholog93059.P9211_10981
Hectar predicted targeting categoryother localisation
TranscriptId163672
TrackFilteredModels1
ProteinId163350
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|163350gene_6599Tribonema minus UTEX_B_3156 geneContig_25 70316..70549 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6599_1exon_6599_1Tribonema minus UTEX_B_3156 exonContig_25 70316..70549 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6599CDS_6599Tribonema minus UTEX_B_3156 CDSContig_25 70316..70549 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|163350Trimin1|163350|e_gw1.25.5.1Tribonema minus UTEX_B_3156 polypeptideContig_25 70316..70549 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6599 ID=mRNA_6599|Name=jgi.p|Trimin1|163350|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=234bp|location=Sequence derived from alignment at Contig_25:70316..70549+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CTGCTTGCACAAGAAGCAGCACGTAGACTGGGTCACAACATAAAACTTGT
AGGTATACAGCAGATTTTTTTTTTAGTTTTTTACGGCAAAGGTCCAGGGG
CTGTTTTTAAAGTATCAAAATCTGTTGGTGTAAAAACAAAATGCACACTT
GAAGTTGCACTTTTTGAAATTGGTAGAAGATCTGGCTTTGTGGGTGTTAG
AATTCCTTTCACACTTCATGAATGCACTTCATGA
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protein sequence of jgi.p|Trimin1|163350

>Trimin1|163350|e_gw1.25.5.1 ID=Trimin1|163350|e_gw1.25.5.1|Name=jgi.p|Trimin1|163350|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=78bp
LLAQEAARRLGHNIKLVGIQQIFFLVFYGKGPGAVFKVSKSVGVKTKCTL
EVALFEIGRRSGFVGVRIPFTLHECTS*
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mRNA from alignment at Contig_25:70316..70549+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6599 ID=mRNA_6599|Name=jgi.p|Trimin1|163350|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=234bp|location=Sequence derived from alignment at Contig_25:70316..70549+ (Tribonema minus UTEX_B_3156 )
CTGCTTGCACAAGAAGCAGCACGTAGACTGGGTCACAACATAAAACTTGT
AGGTATACAGCAGATTTTTTTTTTAGTTTTTTACGGCAAAGGTCCAGGGG
CTGTTTTTAAAGTATCAAAATCTGTTGGTGTAAAAACAAAATGCACACTT
GAAGTTGCACTTTTTGAAATTGGTAGAAGATCTGGCTTTGTGGGTGTTAG
AATTCCTTTCACACTTCATGAATGCACTTCATGA
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Coding sequence (CDS) from alignment at Contig_25:70316..70549+

>mRNA_6599 ID=mRNA_6599|Name=jgi.p|Trimin1|163350|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=234bp|location=Sequence derived from alignment at Contig_25:70316..70549+ (Tribonema minus UTEX_B_3156 )
CTGCTTGCACAAGAAGCAGCACGTAGACTGGGTCACAACATAAAACTTGT
AGGTATACAGCAGATTTTTTTTTTAGTTTTTTACGGCAAAGGTCCAGGGG
CTGTTTTTAAAGTATCAAAATCTGTTGGTGTAAAAACAAAATGCACACTT
GAAGTTGCACTTTTTGAAATTGGTAGAAGATCTGGCTTTGTGGGTGTTAG
AATTCCTTTCACACTTCATGAATGCACTTCATGA
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