mRNA_6598 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|155348
Unique NamemRNA_6598
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|155348 vs. uniprot
Match: A0A835Z293_9STRA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z293_9STRA)

HSP 1 Score: 107 bits (267), Expect = 8.510e-30
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 1 
Query:    1 TGRHGNKGIISKIMPIQDMPYLPDGTIVDIIFNPLGVPSRMNVGQIFESL 150
            TGRHGNKGIISKIMPIQDMPYLPDGTIVDIIFNPLGVPSRMNVGQIFESL
Sbjct:    1 TGRHGNKGIISKIMPIQDMPYLPDGTIVDIIFNPLGVPSRMNVGQIFESL 50
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BLAST of jgi.p|Trimin1|155348 vs. uniprot
Match: A0A835KP33_9POAL (DNA-directed RNA polymerase n=1 Tax=Digitaria exilis TaxID=1010633 RepID=A0A835KP33_9POAL)

HSP 1 Score: 92.0 bits (227), Expect = 5.740e-23
Identity = 41/48 (85.42%), Postives = 44/48 (91.67%), Query Frame = 1 
Query:    1 TGRHGNKGIISKIMPIQDMPYLPDGTIVDIIFNPLGVPSRMNVGQIFE 144
             GRHGNKGIISKI+P QDMPYL DGT VD++FNPLGVPSRMNVGQIFE
Sbjct:   19 AGRHGNKGIISKILPRQDMPYLQDGTTVDMVFNPLGVPSRMNVGQIFE 66
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BLAST of jgi.p|Trimin1|155348 vs. uniprot
Match: B7T1S6_VAULI (DNA-directed RNA polymerase subunit beta n=1 Tax=Vaucheria litorea TaxID=109269 RepID=B7T1S6_VAULI)

HSP 1 Score: 98.6 bits (244), Expect = 8.450e-23
Identity = 44/50 (88.00%), Postives = 47/50 (94.00%), Query Frame = 1 
Query:    1 TGRHGNKGIISKIMPIQDMPYLPDGTIVDIIFNPLGVPSRMNVGQIFESL 150
             GRHGNKGIISKI+PI+DMPYLPDG I+DIIFNPLGVPSRMNVGQIFE L
Sbjct:  833 AGRHGNKGIISKILPIEDMPYLPDGKIIDIIFNPLGVPSRMNVGQIFECL 882
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BLAST of jgi.p|Trimin1|155348 vs. uniprot
Match: A0A679CAB5_9CRYP (DNA-directed RNA polymerase subunit beta n=1 Tax=Cryptomonas sp. CCAC 1634B TaxID=2051848 RepID=A0A679CAB5_9CRYP)

HSP 1 Score: 97.1 bits (240), Expect = 2.930e-22
Identity = 43/50 (86.00%), Postives = 47/50 (94.00%), Query Frame = 1 
Query:    1 TGRHGNKGIISKIMPIQDMPYLPDGTIVDIIFNPLGVPSRMNVGQIFESL 150
            +GRHGNKGIISKI+P+QDMPYLPDGT VDI+ NPLGVPSRMNVGQIFE L
Sbjct:  815 SGRHGNKGIISKILPVQDMPYLPDGTPVDIVLNPLGVPSRMNVGQIFECL 864
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BLAST of jgi.p|Trimin1|155348 vs. uniprot
Match: A0A3G3MI17_9FLOR (DNA-directed RNA polymerase subunit beta n=1 Tax=Rhodogorgon sp. TaxID=2485824 RepID=A0A3G3MI17_9FLOR)

HSP 1 Score: 96.3 bits (238), Expect = 5.470e-22
Identity = 42/50 (84.00%), Postives = 46/50 (92.00%), Query Frame = 1 
Query:    1 TGRHGNKGIISKIMPIQDMPYLPDGTIVDIIFNPLGVPSRMNVGQIFESL 150
             GRHGNKGIIS+I+PIQDMPYLPDGT +DI+ NPLGVPSRMNVGQIFE L
Sbjct:  854 AGRHGNKGIISRILPIQDMPYLPDGTAIDIVLNPLGVPSRMNVGQIFECL 903
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BLAST of jgi.p|Trimin1|155348 vs. uniprot
Match: A0A1W0W422_SORBI (DNA-directed RNA polymerase n=2 Tax=Poaceae TaxID=4479 RepID=A0A1W0W422_SORBI)

HSP 1 Score: 88.6 bits (218), Expect = 5.590e-22
Identity = 40/49 (81.63%), Postives = 43/49 (87.76%), Query Frame = 1 
Query:    1 TGRHGNKGIISKIMPIQDMPYLPDGTIVDIIFNPLGVPSRMNVGQIFES 147
             GRHGNKGIISK +P QDMPYL DGT  D++FNPLGVPSRMNVGQIFES
Sbjct:   19 AGRHGNKGIISKNLPRQDMPYLQDGTPADMVFNPLGVPSRMNVGQIFES 67
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BLAST of jgi.p|Trimin1|155348 vs. uniprot
Match: A0A4S8I7C1_MUSBA (DNA-directed RNA polymerase n=1 Tax=Musa balbisiana TaxID=52838 RepID=A0A4S8I7C1_MUSBA)

HSP 1 Score: 90.9 bits (224), Expect = 6.280e-22
Identity = 41/47 (87.23%), Postives = 44/47 (93.62%), Query Frame = 1 
Query:    4 GRHGNKGIISKIMPIQDMPYLPDGTIVDIIFNPLGVPSRMNVGQIFE 144
            GRHGNKGIISKI+P QDMPYL DGT VD++FNPLGVPSRMNVGQIFE
Sbjct:   68 GRHGNKGIISKILPRQDMPYLQDGTPVDMVFNPLGVPSRMNVGQIFE 114
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BLAST of jgi.p|Trimin1|155348 vs. uniprot
Match: A0A5N6M0L5_9ASTR (DNA-directed RNA polymerase n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6M0L5_9ASTR)

HSP 1 Score: 90.5 bits (223), Expect = 7.090e-22
Identity = 41/49 (83.67%), Postives = 44/49 (89.80%), Query Frame = 1 
Query:    1 TGRHGNKGIISKIMPIQDMPYLPDGTIVDIIFNPLGVPSRMNVGQIFES 147
             GRHGNKGIISKI+P QDMPYL DG  VD++FNPLGVPSRMNVGQIFES
Sbjct:   40 AGRHGNKGIISKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFES 88
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BLAST of jgi.p|Trimin1|155348 vs. uniprot
Match: A0A2Z2KXP2_9FLOR (DNA-directed RNA polymerase subunit beta n=1 Tax=Porolithon onkodes TaxID=231751 RepID=A0A2Z2KXP2_9FLOR)

HSP 1 Score: 95.9 bits (237), Expect = 7.470e-22
Identity = 42/50 (84.00%), Postives = 46/50 (92.00%), Query Frame = 1 
Query:    1 TGRHGNKGIISKIMPIQDMPYLPDGTIVDIIFNPLGVPSRMNVGQIFESL 150
             GRHGNKGIISKI+PIQDMPYLPDGT +DI+ NPLGVPSRMNVGQ+FE L
Sbjct:  854 AGRHGNKGIISKILPIQDMPYLPDGTPIDIVLNPLGVPSRMNVGQLFECL 903
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BLAST of jgi.p|Trimin1|155348 vs. uniprot
Match: A0A6P0LEQ4_9CYAN (DNA-directed RNA polymerase (Fragment) n=1 Tax=Moorena sp. SIO3H5 TaxID=2607834 RepID=A0A6P0LEQ4_9CYAN)

HSP 1 Score: 94.4 bits (233), Expect = 9.220e-22
Identity = 41/50 (82.00%), Postives = 46/50 (92.00%), Query Frame = 1 
Query:    1 TGRHGNKGIISKIMPIQDMPYLPDGTIVDIIFNPLGVPSRMNVGQIFESL 150
             GRHGNKGIIS+I+PI+DMPYLPDGT VDI+ NPLGVPSRMNVGQ+FE L
Sbjct:   77 AGRHGNKGIISRILPIEDMPYLPDGTPVDIVLNPLGVPSRMNVGQVFECL 126
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|155348 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z293_9STRA8.510e-30100.00DNA-directed RNA polymerase (Fragment) n=1 Tax=Tri... [more]
A0A835KP33_9POAL5.740e-2385.42DNA-directed RNA polymerase n=1 Tax=Digitaria exil... [more]
B7T1S6_VAULI8.450e-2388.00DNA-directed RNA polymerase subunit beta n=1 Tax=V... [more]
A0A679CAB5_9CRYP2.930e-2286.00DNA-directed RNA polymerase subunit beta n=1 Tax=C... [more]
A0A3G3MI17_9FLOR5.470e-2284.00DNA-directed RNA polymerase subunit beta n=1 Tax=R... [more]
A0A1W0W422_SORBI5.590e-2281.63DNA-directed RNA polymerase n=2 Tax=Poaceae TaxID=... [more]
A0A4S8I7C1_MUSBA6.280e-2287.23DNA-directed RNA polymerase n=1 Tax=Musa balbisian... [more]
A0A5N6M0L5_9ASTR7.090e-2283.67DNA-directed RNA polymerase n=1 Tax=Mikania micran... [more]
A0A2Z2KXP2_9FLOR7.470e-2284.00DNA-directed RNA polymerase subunit beta n=1 Tax=P... [more]
A0A6P0LEQ4_9CYAN9.220e-2282.00DNA-directed RNA polymerase (Fragment) n=1 Tax=Moo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_25contigContig_25:70095..70244 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|155348|gw1.25.212.1
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400
KEGG rclassRC02795
KEGG ReactionR00435,R00441,R00442,R00443
KEGG ModuleM00183
KEGG Pathwayko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020
KEGG koko:K03043
EC2.7.7.6
GOsGO:0000428,GO:0005575,GO:0005622,GO:0005623,GO:0030880,GO:0032991,GO:0044424,GO:0044464,GO:0061695,GO:1902494,GO:1990234
Preferred namerpoB
DescriptionDNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
COG categoryK
Max annot lvl1117|Cyanobacteria
EggNOG OGsCOG0085@1|root,COG0085@2|Bacteria,1G14Y@1117|Cyanobacteria
Evalue1.67e-22
Seed ortholog1173020.Cha6605_3006
Hectar predicted targeting categoryno signal peptide or anchor
TranscriptId155670
TrackFilteredModels1
ProteinId155348
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|155348gene_6598Tribonema minus UTEX_B_3156 geneContig_25 70095..70244 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6598_1exon_6598_1Tribonema minus UTEX_B_3156 exonContig_25 70095..70244 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6598CDS_6598Tribonema minus UTEX_B_3156 CDSContig_25 70095..70244 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|155348Trimin1|155348|gw1.25.212.1Tribonema minus UTEX_B_3156 polypeptideContig_25 70095..70244 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6598 ID=mRNA_6598|Name=jgi.p|Trimin1|155348|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=150bp|location=Sequence derived from alignment at Contig_25:70095..70244- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ACTGGTCGGCATGGGAATAAAGGTATTATATCGAAAATTATGCCAATTCA
GGATATGCCATATTTACCGGATGGTACTATTGTCGATATAATTTTTAACC
CTTTAGGTGTTCCATCTCGAATGAATGTGGGACAAATTTTTGAGTCTTTA
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protein sequence of jgi.p|Trimin1|155348

>Trimin1|155348|gw1.25.212.1 ID=Trimin1|155348|gw1.25.212.1|Name=jgi.p|Trimin1|155348|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=50bp
TGRHGNKGIISKIMPIQDMPYLPDGTIVDIIFNPLGVPSRMNVGQIFESL
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mRNA from alignment at Contig_25:70095..70244-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6598 ID=mRNA_6598|Name=jgi.p|Trimin1|155348|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=150bp|location=Sequence derived from alignment at Contig_25:70095..70244- (Tribonema minus UTEX_B_3156 )
ACTGGTCGGCATGGGAATAAAGGTATTATATCGAAAATTATGCCAATTCA
GGATATGCCATATTTACCGGATGGTACTATTGTCGATATAATTTTTAACC
CTTTAGGTGTTCCATCTCGAATGAATGTGGGACAAATTTTTGAGTCTTTA
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Coding sequence (CDS) from alignment at Contig_25:70095..70244-

>mRNA_6598 ID=mRNA_6598|Name=jgi.p|Trimin1|155348|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=150bp|location=Sequence derived from alignment at Contig_25:70095..70244- (Tribonema minus UTEX_B_3156 )
ACTGGTCGGCATGGGAATAAAGGTATTATATCGAAAATTATGCCAATTCA
GGATATGCCATATTTACCGGATGGTACTATTGTCGATATAATTTTTAACC
CTTTAGGTGTTCCATCTCGAATGAATGTGGGACAAATTTTTGAGTCTTTA
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