mRNA_6592 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|169134
Unique NamemRNA_6592
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|169134 vs. uniprot
Match: A0A835YN78_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN78_9STRA)

HSP 1 Score: 290 bits (742), Expect = 1.430e-99
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1 
Query:    1 KSGCKECVNRSNREYTETLRGWATVLVCLAKGTGKAQTEKGRTCRVTITFQQILKKYLVQQGMCLYSGVPMRTKKGDWLMSLERINPAGDYSDENTCLVCHEFNVGDKRAMLVNETTGERLTHDELMTREGCFWSK 408
            KSGCKECVNRSNREYTETLRGWATVLVCLAKGTGKAQTEKGRTCRVTITFQQILKKYLVQQGMCLYSGVPMRTKKGDWLMSLERINPAGDYSDENTCLVCHEFNVGDKRAMLVNETTGERLTHDELMTREGCFWSK
Sbjct:    1 KSGCKECVNRSNREYTETLRGWATVLVCLAKGTGKAQTEKGRTCRVTITFQQILKKYLVQQGMCLYSGVPMRTKKGDWLMSLERINPAGDYSDENTCLVCHEFNVGDKRAMLVNETTGERLTHDELMTREGCFWSK 136
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BLAST of jgi.p|Trimin1|169134 vs. uniprot
Match: A0A836CFS8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFS8_9STRA)

HSP 1 Score: 223 bits (567), Expect = 1.500e-69
Identity = 98/134 (73.13%), Postives = 117/134 (87.31%), Query Frame = 1 
Query:    7 GCKECVNRSNREYTETLRGWATVLVCLAKGTGKAQTEKGRTCRVTITFQQILKKYLVQQGMCLYSGVPMRTKKGDWLMSLERINPAGDYSDENTCLVCHEFNVGDKRAMLVNETTGERLTHDELMTREGCFWSK 408
            GCKEC  RSNREY ETLRGWAT+LVCLA+G+ KA+  KGR CRVT+T QQIL+KYL+QQG+C YS +PM TK+GDW MSLERINP GDYS++NTCLVCHEFNVGD R+ + +ETTGERLT +E+M+REGCFWS+
Sbjct:  232 GCKECQTRSNREYLETLRGWATMLVCLARGSAKAKVAKGRVCRVTLTVQQILRKYLLQQGLCWYSNIPMCTKRGDWRMSLERINPTGDYSNDNTCLVCHEFNVGDHRSTIRDETTGERLTDEEVMSREGCFWSQ 365
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BLAST of jgi.p|Trimin1|169134 vs. uniprot
Match: A0A835Z7Q5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7Q5_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 1.310e-12
Identity = 39/102 (38.24%), Postives = 56/102 (54.90%), Query Frame = 1 
Query:    7 GCKECVNRSNREYTETLRGWATVLVCLAKGTGKAQTEKGRTCRVTITFQQILKKYLVQQGMCLYSGVPMRTKKGDWLMSLERINPAGDYSDENTCLVCHEFN 312
            GC EC +   +    + RG   +LV  ++ +    +   R    TITF+ ++K Y  Q+GMC YSG+ + T+ G+W  SLER N    Y+ EN CLV  EFN
Sbjct:  244 GCIECCSAKTKARESSWRGVLQILVTTSRKSCNRGSRAARGLVHTITFEDVVKMYREQRGMCYYSGIKL-TRDGNWKASLERKNVRIGYTAENCCLVAAEFN 344
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BLAST of jgi.p|Trimin1|169134 vs. uniprot
Match: A0A836CDF4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDF4_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 5.940e-11
Identity = 33/78 (42.31%), Postives = 50/78 (64.10%), Query Frame = 1 
Query:  103 KAQTEKGRTC--RVTITFQQILKKYLVQQGMCLYSGVPMRTKKGDWLMSLERINPAGDYSDENTCLVCHEFNVGDKRA 330
            + + ++  TC  R  +   Q++ K   Q+G+C YS + M ++KGDW +SLER+N A  Y+D NT LVC +FNV D+ A
Sbjct:  425 QCEAQRQATCKKRGGLVLDQLIAKLQGQRGLCYYSDMRMYSRKGDWRVSLERLNSALGYTDANTVLVCQKFNVTDRSA 502
[Close]
BLAST of jgi.p|Trimin1|169134 vs. uniprot
Match: A0A836CBC7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBC7_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 1.730e-9
Identity = 29/54 (53.70%), Postives = 39/54 (72.22%), Query Frame = 1 
Query:  169 YLVQQGMCLYSGVPMRTKKGDWLMSLERINPAGDYSDENTCLVCHEFNVGDKRA 330
            Y  Q+G+C YS + M ++KGDW +SLER+N A  Y+D NT LVC +FNV D+ A
Sbjct:  215 YEGQRGLCYYSDMRMYSRKGDWRVSLERLNSALGYTDANTVLVCQKFNVTDRSA 268
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|169134 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A835YN78_9STRA1.430e-99100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CFS8_9STRA1.500e-6973.13Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z7Q5_9STRA1.310e-1238.24Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CDF4_9STRA5.940e-1142.31Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CBC7_9STRA1.730e-953.70Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_62contigContig_62:765999..766409 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|169134|e_gw1.62.88.1
Hectar predicted targeting categoryother localisation
TranscriptId169456
TrackFilteredModels1
ProteinId169134
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|169134gene_6592Tribonema minus UTEX_B_3156 geneContig_62 765999..766409 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6592_1exon_6592_1Tribonema minus UTEX_B_3156 exonContig_62 765999..766409 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6592CDS_6592Tribonema minus UTEX_B_3156 CDSContig_62 765999..766409 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|169134Trimin1|169134|e_gw1.62.88.1Tribonema minus UTEX_B_3156 polypeptideContig_62 765999..766409 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6592 ID=mRNA_6592|Name=jgi.p|Trimin1|169134|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=411bp|location=Sequence derived from alignment at Contig_62:765999..766409- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AAAAGCGGCTGCAAGGAGTGCGTAAACAGGTCAAATCGGGAGTACACCGA
AACATTGCGAGGCTGGGCTACAGTGCTGGTGTGCCTTGCCAAAGGCACCG
GCAAAGCACAAACTGAAAAGGGCCGAACCTGCAGAGTGACCATCACATTT
CAACAGATACTGAAGAAGTATTTGGTGCAGCAGGGGATGTGTTTGTACTC
CGGTGTACCTATGCGCACCAAGAAAGGCGATTGGCTGATGTCACTCGAGA
GGATCAATCCCGCTGGAGATTATAGCGATGAGAACACATGCCTAGTGTGC
CATGAGTTCAATGTTGGTGACAAACGTGCCATGCTAGTCAACGAGACTAC
GGGGGAACGTTTGACTCATGACGAATTGATGACACGAGAGGGGTGTTTCT
GGTCGAAATAG
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protein sequence of jgi.p|Trimin1|169134

>Trimin1|169134|e_gw1.62.88.1 ID=Trimin1|169134|e_gw1.62.88.1|Name=jgi.p|Trimin1|169134|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=137bp
KSGCKECVNRSNREYTETLRGWATVLVCLAKGTGKAQTEKGRTCRVTITF
QQILKKYLVQQGMCLYSGVPMRTKKGDWLMSLERINPAGDYSDENTCLVC
HEFNVGDKRAMLVNETTGERLTHDELMTREGCFWSK*
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mRNA from alignment at Contig_62:765999..766409-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6592 ID=mRNA_6592|Name=jgi.p|Trimin1|169134|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=411bp|location=Sequence derived from alignment at Contig_62:765999..766409- (Tribonema minus UTEX_B_3156 )
AAAAGCGGCTGCAAGGAGTGCGTAAACAGGTCAAATCGGGAGTACACCGA
AACATTGCGAGGCTGGGCTACAGTGCTGGTGTGCCTTGCCAAAGGCACCG
GCAAAGCACAAACTGAAAAGGGCCGAACCTGCAGAGTGACCATCACATTT
CAACAGATACTGAAGAAGTATTTGGTGCAGCAGGGGATGTGTTTGTACTC
CGGTGTACCTATGCGCACCAAGAAAGGCGATTGGCTGATGTCACTCGAGA
GGATCAATCCCGCTGGAGATTATAGCGATGAGAACACATGCCTAGTGTGC
CATGAGTTCAATGTTGGTGACAAACGTGCCATGCTAGTCAACGAGACTAC
GGGGGAACGTTTGACTCATGACGAATTGATGACACGAGAGGGGTGTTTCT
GGTCGAAATAG
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Coding sequence (CDS) from alignment at Contig_62:765999..766409-

>mRNA_6592 ID=mRNA_6592|Name=jgi.p|Trimin1|169134|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=411bp|location=Sequence derived from alignment at Contig_62:765999..766409- (Tribonema minus UTEX_B_3156 )
AAAAGCGGCTGCAAGGAGTGCGTAAACAGGTCAAATCGGGAGTACACCGA
AACATTGCGAGGCTGGGCTACAGTGCTGGTGTGCCTTGCCAAAGGCACCG
GCAAAGCACAAACTGAAAAGGGCCGAACCTGCAGAGTGACCATCACATTT
CAACAGATACTGAAGAAGTATTTGGTGCAGCAGGGGATGTGTTTGTACTC
CGGTGTACCTATGCGCACCAAGAAAGGCGATTGGCTGATGTCACTCGAGA
GGATCAATCCCGCTGGAGATTATAGCGATGAGAACACATGCCTAGTGTGC
CATGAGTTCAATGTTGGTGACAAACGTGCCATGCTAGTCAACGAGACTAC
GGGGGAACGTTTGACTCATGACGAATTGATGACACGAGAGGGGTGTTTCT
GGTCGAAATAG
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