mRNA_6559 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|169116
Unique NamemRNA_6559
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|169116 vs. uniprot
Match: A0A835YN58_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN58_9STRA)

HSP 1 Score: 255 bits (652), Expect = 2.220e-86
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 1
Query:    1 MCSDGTDYKLPSEKEWRSGFCTHRARPDFNNSLGVVVFIHGYNVTEKGAVETALKLQNGLNCPVVAFDWASHGREWRYTSDRSEATAEATGQKWASMMQTLRSLQVGVVHIIAHSMGNLV 360
            MCSDGTDYKLPSEKEWRSGFCTHRARPDFNNSLGVVVFIHGYNVTEKGAVETALKLQNGLNCPVVAFDWASHGREWRYTSDRSEATAEATGQKWASMMQTLRSLQVGVVHIIAHSMGNLV
Sbjct:    1 MCSDGTDYKLPSEKEWRSGFCTHRARPDFNNSLGVVVFIHGYNVTEKGAVETALKLQNGLNCPVVAFDWASHGREWRYTSDRSEATAEATGQKWASMMQTLRSLQVGVVHIIAHSMGNLV 120          
BLAST of jgi.p|Trimin1|169116 vs. uniprot
Match: A0A450WLY0_9GAMM (Esterase/lipase superfamily enzyme n=1 Tax=Candidatus Kentron sp. LFY TaxID=2126342 RepID=A0A450WLY0_9GAMM)

HSP 1 Score: 63.2 bits (152), Expect = 2.800e-9
Identity = 40/121 (33.06%), Postives = 60/121 (49.59%), Query Frame = 1
Query:   31 PSEKEWRSGFCTHRARPDFNNSLG-VVVFIHGYNVTEKGAVETALKLQNGLNCP------VVAFDWASHGREWRYTSDRSEATAE--ATGQKWASMMQTLRSLQVGV-----VHIIAHSMG 351
            P   +  SG    + +       G V++F+HG+NVT KGA+ETA  LQ G   P      +V F W ++G+   Y  DR +A A   A  +    + + LR +  G      +H++AHSMG
Sbjct:   51 PDGAKLGSGHLFSKLQKQMRKKTGDVLIFMHGFNVTFKGALETAAVLQKGYKIPDQPPLNLVTFSWPANGKLLHYHRDRHDAKASGLAVARGLMKLAKFLREMNAGDACQRNLHLLAHSMG 171          
BLAST of jgi.p|Trimin1|169116 vs. uniprot
Match: A0A7Y6ZE00_9RHOB (Alpha/beta fold hydrolase n=4 Tax=Rhodobacterales TaxID=204455 RepID=A0A7Y6ZE00_9RHOB)

HSP 1 Score: 61.6 bits (148), Expect = 1.130e-8
Identity = 42/116 (36.21%), Postives = 57/116 (49.14%), Query Frame = 1
Query:   25 KLPSEKEWRSGFCTHRARPDFNNSLGVVVFIHGYNVTEKGAVETALKLQNG--LNCPVVAFDWASHGREWRYTSDRSEATAEATGQKWASMMQTLRSL---QVGVVHIIAHSMGNL 357
            +  +E ++R      R R       GVV+F+HGYNV+  GAV  A ++     L+ P+V F W S GR  RY  DR             ++ QTLR L   Q   + I+AHSMG L
Sbjct:  101 RFDTEPDFRHAL-NQRVRAQPKGERGVVLFVHGYNVSYPGAVFRAAQIATDFQLDQPMVLFSWPSAGRISRYAYDRDSVLFARK-----ALAQTLRDLAQSQAEQITILAHSMGGL 210          
BLAST of jgi.p|Trimin1|169116 vs. uniprot
Match: A0A1I3J205_9RHOB (Esterase/lipase superfamily enzyme n=2 Tax=Celeribacter neptunius TaxID=588602 RepID=A0A1I3J205_9RHOB)

HSP 1 Score: 60.8 bits (146), Expect = 2.130e-8
Identity = 36/88 (40.91%), Postives = 48/88 (54.55%), Query Frame = 1
Query:  100 GVVVFIHGYNVTEKGAVETALKLQNG--LNCPVVAFDWASHGREWRYTSDRSEATAEATGQKWASMMQTLRSLQVGVVHIIAHSMGNL 357
            GVV+F+HGYNV+  GAV  A ++     L+ P+V F W S GR  RY  DR         +  A  +Q L + Q   + I+AHSMG L
Sbjct:  132 GVVLFVHGYNVSYPGAVFRAAQIATDFQLDQPMVLFSWPSAGRASRYAYDRDSVLFAR--KALARTLQDLAATQAEQITILAHSMGGL 217          
BLAST of jgi.p|Trimin1|169116 vs. uniprot
Match: A0A450S873_9GAMM (Uncharacterized protein n=1 Tax=Candidatus Kentron sp. FM TaxID=2126340 RepID=A0A450S873_9GAMM)

HSP 1 Score: 58.9 bits (141), Expect = 9.260e-8
Identity = 38/121 (31.40%), Postives = 58/121 (47.93%), Query Frame = 1
Query:   31 PSEKEWRSGFCTHRARPDFNNSLG-VVVFIHGYNVTEKGAVETALKLQNGLNCP------VVAFDWASHGREWRYTSDRSEATAE--ATGQKWASMMQTLRSLQVGV-----VHIIAHSMG 351
            P + +  SG      +       G V++F+HG+NVT +GA+ETA  LQ G   P      +V F W S+G+   Y  DR +A A   A  +    + + LR +         +H++ HSMG
Sbjct:   51 PDDAKLGSGHLFSDLQKQMREKTGDVLIFLHGFNVTFEGALETATVLQEGYKIPDQPLLNLVTFSWPSNGKLLHYHRDRHDAKASGLAVARGLIKLAEFLRKMNAEDACQRNLHLLTHSMG 171          
BLAST of jgi.p|Trimin1|169116 vs. uniprot
Match: UPI001BC081E2 (Alpha/beta hydrolase n=1 Tax=Methylomicrobium sp. TaxID=2303549 RepID=UPI001BC081E2)

HSP 1 Score: 57.0 bits (136), Expect = 4.470e-7
Identity = 38/107 (35.51%), Postives = 55/107 (51.40%), Query Frame = 1
Query:   91 NSLGVVVFIHGYNVTEKGAVETALKLQ--------NGLNCPVVAFDWASHGREWRYTSDRSEATAEATGQKWASMMQTLRSLQVGV---------VHIIAHSMGNLV 360
            +S+  +VFIHG+NV+ K AVE+A K+         N     +  F W S G+  RY +DR +A  EA+G  +A  +  L     G          +++IAHSMGN V
Sbjct:   75 DSVDSLVFIHGFNVSFKAAVESAAKMGERYLKISGNTYQPNIFVFSWPSDGKITRYFNDRHDA--EASGYAFARGLMKLSGFLHGAPKKEACRQKINLIAHSMGNYV 179          
BLAST of jgi.p|Trimin1|169116 vs. uniprot
Match: UPI001BAB94CE (alpha/beta hydrolase n=1 Tax=Roseomonas arctica TaxID=1509237 RepID=UPI001BAB94CE)

HSP 1 Score: 55.1 bits (131), Expect = 2.190e-6
Identity = 29/94 (30.85%), Postives = 49/94 (52.13%), Query Frame = 1
Query:   94 SLGVVVFIHGYNVTEKGAVETALKLQNGLNCPVVAFDWASHGREWRYTSDRS--EATAEATGQKWASMMQTLRSLQVGV-----VHIIAHSMGN 354
            S  ++ +IHG+    +GA+ TA +L N L+C V    W S G    Y +DR   + + EA G+ ++  ++ L            ++++AHSMGN
Sbjct:   87 SREILFYIHGFRTEMEGAIRTAARLSNALDCTVFLISWPSAGDVTGYLADRGTVDVSGEAIGRVFSIFLRYLADRDEAEKCDRRINLLAHSMGN 180          
BLAST of jgi.p|Trimin1|169116 vs. uniprot
Match: A0A6I5NPT5_9CYAN (Alpha/beta fold hydrolase n=1 Tax=Leptolyngbya sp. SIOISBB TaxID=2607771 RepID=A0A6I5NPT5_9CYAN)

HSP 1 Score: 53.1 bits (126), Expect = 1.020e-5
Identity = 36/108 (33.33%), Postives = 56/108 (51.85%), Query Frame = 1
Query:   88 NNSLGVVVFIHGYNVTEKGAVETALKLQNGL--------NCPVVAFDWASHGREWRYTSDRSEATAEATGQKWA----SMMQTLRSLQVGV-----VHIIAHSMGNLV 360
            + S   ++ IHG+NVT K A+E+A++LQ  L           +  F W S+G+ + Y  DR +A  + +G  +A     + + LRS   G      V++IAHSMG  V
Sbjct:   74 SQSRDSIILIHGFNVTFKDAIESAVQLQTRLAQLSNQQYTPNIFVFSWPSNGKLFEYKDDRHDA--QTSGYAFARGLEKLTRFLRSTSEGEACQQRVNLIAHSMGTYV 179          
BLAST of jgi.p|Trimin1|169116 vs. uniprot
Match: K2JSK9_9RHOB (Uncharacterized protein n=5 Tax=Celeribacter baekdonensis TaxID=875171 RepID=K2JSK9_9RHOB)

HSP 1 Score: 52.4 bits (124), Expect = 1.990e-5
Identity = 31/88 (35.23%), Postives = 44/88 (50.00%), Query Frame = 1
Query:  100 GVVVFIHGYNVTEKGAVETALKLQNGLNC--PVVAFDWASHGREWRYTSDRSEATAEATGQKWASMMQTLRSLQVGVVHIIAHSMGNL 357
            GV++F+HGYNV+   AV  A ++        P+VAF W S GR  +Y  DR         +  A  ++ L       + I+AHSMG L
Sbjct:  125 GVILFVHGYNVSYASAVFRAAQIATDFKMTEPMVAFSWPSAGRVSQYAYDRDSVLYAR--RALADAIKDLARSNAQSITILAHSMGGL 210          
BLAST of jgi.p|Trimin1|169116 vs. uniprot
Match: A0A1Y1HWD9_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HWD9_KLENI)

HSP 1 Score: 51.2 bits (121), Expect = 5.580e-5
Identity = 33/98 (33.67%), Postives = 48/98 (48.98%), Query Frame = 1
Query:  103 VVVFIHGYNVTEKGAVETALKLQNGLNCP-------VVAFDWASHGREWRY-------TSDRSEATAEATGQKWASMMQTLRSLQVGVVHIIAHSMGN 354
            +++FIHG+N + KGA+  A +L   L          V+A+DWAS+    RY         DR  A   A G+    + +   S     +HI+AHSMGN
Sbjct:  474 LLLFIHGFNTSFKGAIRGAAQLAFDLKTDAGSYEGAVLAYDWASYAETLRYGFLPGKGNDDRDRARTSA-GRLAGLLRELAASFPGKKLHIVAHSMGN 570          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|169116 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A835YN58_9STRA2.220e-86100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A450WLY0_9GAMM2.800e-933.06Esterase/lipase superfamily enzyme n=1 Tax=Candida... [more]
A0A7Y6ZE00_9RHOB1.130e-836.21Alpha/beta fold hydrolase n=4 Tax=Rhodobacterales ... [more]
A0A1I3J205_9RHOB2.130e-840.91Esterase/lipase superfamily enzyme n=2 Tax=Celerib... [more]
A0A450S873_9GAMM9.260e-831.40Uncharacterized protein n=1 Tax=Candidatus Kentron... [more]
UPI001BC081E24.470e-735.51Alpha/beta hydrolase n=1 Tax=Methylomicrobium sp. ... [more]
UPI001BAB94CE2.190e-630.85alpha/beta hydrolase n=1 Tax=Roseomonas arctica Ta... [more]
A0A6I5NPT5_9CYAN1.020e-533.33Alpha/beta fold hydrolase n=1 Tax=Leptolyngbya sp.... [more]
K2JSK9_9RHOB1.990e-535.23Uncharacterized protein n=5 Tax=Celeribacter baekd... [more]
A0A1Y1HWD9_KLENI5.580e-533.67Uncharacterized protein n=1 Tax=Klebsormidium nite... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_62contigContig_62:649051..649410 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|169116|e_gw1.62.56.1
DescriptionAlpha/beta hydrolase of unknown function (DUF900)
COG categoryS
Max annot lvl28211|Alphaproteobacteria
EggNOG OGsCOG4782@1|root,COG4782@2|Bacteria,1MVAD@1224|Proteobacteria,2TTCR@28211|Alphaproteobacteria,3JWA5@41294|Bradyrhizobiaceae
Evalue9.08e-07
Seed ortholog1502851.FG93_05597
Hectar predicted targeting categoryother localisation
TranscriptId169438
TrackFilteredModels1
ProteinId169116
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|169116gene_6559Tribonema minus UTEX_B_3156 geneContig_62 649051..649410 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6559_1exon_6559_1Tribonema minus UTEX_B_3156 exonContig_62 649051..649410 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6559CDS_6559Tribonema minus UTEX_B_3156 CDSContig_62 649051..649410 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|169116Trimin1|169116|e_gw1.62.56.1Tribonema minus UTEX_B_3156 polypeptideContig_62 649051..649410 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6559 ID=mRNA_6559|Name=jgi.p|Trimin1|169116|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=360bp|location=Sequence derived from alignment at Contig_62:649051..649410- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCAGTGATGGAACAGACTATAAACTGCCATCTGAGAAAGAATGGCG
GTCGGGGTTTTGCACTCATCGAGCCAGGCCGGATTTCAACAACTCACTTG
GCGTGGTGGTATTCATTCACGGTTACAATGTAACCGAAAAAGGTGCCGTC
GAAACAGCGCTGAAGCTCCAAAATGGCCTTAACTGCCCTGTTGTAGCCTT
TGATTGGGCCAGTCACGGGCGTGAGTGGAGATATACATCAGACCGGAGCG
AGGCAACGGCTGAAGCCACAGGCCAGAAATGGGCAAGTATGATGCAGACC
CTCCGGAGCCTTCAAGTTGGTGTTGTTCACATCATAGCCCATAGCATGGG
GAATCTTGTG
back to top

protein sequence of jgi.p|Trimin1|169116

>Trimin1|169116|e_gw1.62.56.1 ID=Trimin1|169116|e_gw1.62.56.1|Name=jgi.p|Trimin1|169116|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=120bp
MCSDGTDYKLPSEKEWRSGFCTHRARPDFNNSLGVVVFIHGYNVTEKGAV
ETALKLQNGLNCPVVAFDWASHGREWRYTSDRSEATAEATGQKWASMMQT
LRSLQVGVVHIIAHSMGNLV
back to top

mRNA from alignment at Contig_62:649051..649410-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6559 ID=mRNA_6559|Name=jgi.p|Trimin1|169116|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=360bp|location=Sequence derived from alignment at Contig_62:649051..649410- (Tribonema minus UTEX_B_3156 )
ATGTGCAGTGATGGAACAGACTATAAACTGCCATCTGAGAAAGAATGGCG GTCGGGGTTTTGCACTCATCGAGCCAGGCCGGATTTCAACAACTCACTTG GCGTGGTGGTATTCATTCACGGTTACAATGTAACCGAAAAAGGTGCCGTC GAAACAGCGCTGAAGCTCCAAAATGGCCTTAACTGCCCTGTTGTAGCCTT TGATTGGGCCAGTCACGGGCGTGAGTGGAGATATACATCAGACCGGAGCG AGGCAACGGCTGAAGCCACAGGCCAGAAATGGGCAAGTATGATGCAGACC CTCCGGAGCCTTCAAGTTGGTGTTGTTCACATCATAGCCCATAGCATGGG GAATCTTGTG
back to top

Coding sequence (CDS) from alignment at Contig_62:649051..649410-

>mRNA_6559 ID=mRNA_6559|Name=jgi.p|Trimin1|169116|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=360bp|location=Sequence derived from alignment at Contig_62:649051..649410- (Tribonema minus UTEX_B_3156 )
ATGTGCAGTGATGGAACAGACTATAAACTGCCATCTGAGAAAGAATGGCG
GTCGGGGTTTTGCACTCATCGAGCCAGGCCGGATTTCAACAACTCACTTG
GCGTGGTGGTATTCATTCACGGTTACAATGTAACCGAAAAAGGTGCCGTC
GAAACAGCGCTGAAGCTCCAAAATGGCCTTAACTGCCCTGTTGTAGCCTT
TGATTGGGCCAGTCACGGGCGTGAGTGGAGATATACATCAGACCGGAGCG
AGGCAACGGCTGAAGCCACAGGCCAGAAATGGGCAAGTATGATGCAGACC
CTCCGGAGCCTTCAAGTTGGTGTTGTTCACATCATAGCCCATAGCATGGG
GAATCTTGTG
back to top