mRNA_6536 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|169233
Unique NamemRNA_6536
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|169233 vs. uniprot
Match: A0A835YQI5_9STRA (Radial spoke protein 3-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQI5_9STRA)

HSP 1 Score: 858 bits (2216), Expect = 3.090e-313
Identity = 465/465 (100.00%), Postives = 465/465 (100.00%), Query Frame = 1
Query:    1 MRSTTVGGGYGGRVAERTITPRPKYRGDVVQQDDDALTEPDTDDYYPINIHQDPRVARVNTYARRPVLPPIGTASSSKKRVKPGRVVSIASQRAALSAQLYDPNYGTYNNQKQELDLSKYLVAPEPQIEDDASERINRQRAPASMPFYGFSDSVTQTDEFAEKPDEVYYKQPLGGADAATEVINTELFDFDREIKPLLDVLIGKTLEQAKLEVERSWELQQIAQATDRFNAERVAEARAQEQLEAAAIERXXXXXXXXXXXXXXALSRWQATQKVAAVCMMRQCWPGVLRGACEALRAAGRWCEPRAIDIADEFMPWLLDSVGARAGALSAAYAVTDGLCEEALRRGEALAEAHEAAVQREAKEAAAASAAAGATTQLWVEGAAVGLEGGKLGPVTVTNDSSIAAVEKSIADWFEENGLAAEVPEGGFLSLSFDCSGVDAESVTLTELKERGGLAEAEQVTLGSA 1395
            MRSTTVGGGYGGRVAERTITPRPKYRGDVVQQDDDALTEPDTDDYYPINIHQDPRVARVNTYARRPVLPPIGTASSSKKRVKPGRVVSIASQRAALSAQLYDPNYGTYNNQKQELDLSKYLVAPEPQIEDDASERINRQRAPASMPFYGFSDSVTQTDEFAEKPDEVYYKQPLGGADAATEVINTELFDFDREIKPLLDVLIGKTLEQAKLEVERSWELQQIAQATDRFNAERVAEARAQEQLEAAAIERXXXXXXXXXXXXXXALSRWQATQKVAAVCMMRQCWPGVLRGACEALRAAGRWCEPRAIDIADEFMPWLLDSVGARAGALSAAYAVTDGLCEEALRRGEALAEAHEAAVQREAKEAAAASAAAGATTQLWVEGAAVGLEGGKLGPVTVTNDSSIAAVEKSIADWFEENGLAAEVPEGGFLSLSFDCSGVDAESVTLTELKERGGLAEAEQVTLGSA
Sbjct:    1 MRSTTVGGGYGGRVAERTITPRPKYRGDVVQQDDDALTEPDTDDYYPINIHQDPRVARVNTYARRPVLPPIGTASSSKKRVKPGRVVSIASQRAALSAQLYDPNYGTYNNQKQELDLSKYLVAPEPQIEDDASERINRQRAPASMPFYGFSDSVTQTDEFAEKPDEVYYKQPLGGADAATEVINTELFDFDREIKPLLDVLIGKTLEQAKLEVERSWELQQIAQATDRFNAERVAEARAQEQLEAAAIERXXXXXXXXXXXXXXALSRWQATQKVAAVCMMRQCWPGVLRGACEALRAAGRWCEPRAIDIADEFMPWLLDSVGARAGALSAAYAVTDGLCEEALRRGEALAEAHEAAVQREAKEAAAASAAAGATTQLWVEGAAVGLEGGKLGPVTVTNDSSIAAVEKSIADWFEENGLAAEVPEGGFLSLSFDCSGVDAESVTLTELKERGGLAEAEQVTLGSA 465          
BLAST of jgi.p|Trimin1|169233 vs. uniprot
Match: D7FP98_ECTSI (Flagellar radial spoke protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP98_ECTSI)

HSP 1 Score: 144 bits (364), Expect = 1.160e-34
Identity = 149/404 (36.88%), Postives = 200/404 (49.50%), Query Frame = 1
Query:  127 DDYYPINIHQDPRVARVNTYA--RRPVLP-----PIGTASSSKKRVKPGRVVSIASQRAALSAQLYDPNYGTYNNQKQELDLSKYLVAPEPQIEDDASERINRQRAPASMPFYGFSDSVTQTDEFAEKPDEVYYKQPLGGADAATEV-INTELFDFDREIKPLLDVLIGKTLEQAKLEVERSWELQQIAQATDRFNAERVAEARAQEQLEAAAIERXXXXXXXXXXXXXXALSRWQATQKVAAVCMMRQCWPGVLRGACEALRAAGRWCEPRAIDIADEFMPWLLDSVGARAGALSAAYAVTDGLCE------EALRRGEALAEAHEAAVQREAKEAAAASAAAGATTQLWVEGAAVG-LEGGKLGPVTVTNDSSIAAVEKSIADWFEENGLAAEV--PEGGFL 1287
            D ++PINIH DPRVAR NT+A  RR   P     P   A  S+KR+  G+  S  S  +    +   P        ++ELDLS+YLV P      D + R  R+             + TQTD+F E+P    +     G DA T++ ++ +LFDF+ E++P+L VL+GKTLEQA++EVER  EL  I +A      +R  E +   +L+ AA+E   XXXXXXXXXXXX   R  A +KVA + ++RQ  P  L  A E L A   W       I   F+PWL   V A  G  S+     D L E      E  R         EA  +REA     A  A     +L+V G  VG  EG +LGPV V    ++ A E  +A W  +     E+  P+GGFL
Sbjct:   46 DPFFPINIHHDPRVARGNTFAGDRRDAQPSAEPGPKTVAKKSRKRL--GQSRSRGSSSSFFDTRASQPVL------REELDLSRYLVEP-----GDTAARPERE-------------ADTQTDDFQERPQTPDFVPKKTGVDAWTQIEVSDKLFDFEAEVQPMLAVLVGKTLEQARMEVEREHELLCIREAATALVHQRAEEVQQVLELKQAAVEAEKXXXXXXXXXXXXXNRRRLAKEKVACLQLVRQVLPLSLDRAFEQLSAKS-WETQSVQQIKKVFLPWLFGRVAADVGQRSSVLDALDSLLESVDETAETARNQRIQDRDREAEARREA-----ARVARERVIRLFVPGEVVGGEEGERLGPVAVKAGETVKAAEAKVARWLAKERETGELEDPQGGFL 417          
BLAST of jgi.p|Trimin1|169233 vs. uniprot
Match: A0A2R5GXC9_9STRA (Radial spoke head protein 3-like n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GXC9_9STRA)

HSP 1 Score: 103 bits (256), Expect = 1.970e-20
Identity = 93/291 (31.96%), Postives = 144/291 (49.48%), Query Frame = 1
Query:  463 TQTDEFAEKPDEVYYKQPLGGADAATEVIN-TELFDFDREIKPLLDVLIGKTLEQAKLEVERSWELQQIAQATDRFNAERVAEARAQEQLEAAAIERXXXXXXXXXXXXXXALSRWQATQKVAAVCMMRQCWPGVLRG-ACEALRAAGRWCEPRAIDIADEFMPWLLDSVGARAGALSAAYAVTDGLCEEALRRGEALAEAHEAAVQ-REAKEAAAASAAAGATTQ----LWVEGAAVGLEGGKLGPVTVTNDSSIAAVEKSIADWFEENGLAAEV--PEGGFLSLSFDCS 1308
            TQTD F EKP+   Y     G D  T++ + TELF+FD E++P+L++++ KTLEQ+ LEV +  E+ Q+A+A     AER      QE  E   ++R                      +K AA    +      L   A   L A+G + +    ++ + F+P+L D+VGA       A ++ D +   AL +    A A+  A+  R+A EA AA+ A     Q    +++ G  +    G LGP+ +    SIAA E++I +W +EN L   V  PEGG+L L+ + S
Sbjct:   30 TQTDTFHEKPESPPYAPRKTGVDVGTQIEDQTELFNFDVEVEPILNIIVTKTLEQSLLEVRQEEEIAQLARAKAHHLAERQRIRAEQEARERLEMQRWTEKEALKRQESGRLARELVLCKKAAANRFFQMNLGAQLEASAIRNLEASGHFRDELRDEVTEVFLPFLEDAVGALVERRENASSLADEILGHALSKRRQRALAYRQAIHDRKAAEALAAAEARTKEKQRRIRIYLRGEDILGTEGMLGPIELHVHESIAAAERAIQEWIDENVLDTTVSAPEGGYLQLALELS 320          
BLAST of jgi.p|Trimin1|169233 vs. uniprot
Match: A0A1Y1HK05_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HK05_KLENI)

HSP 1 Score: 103 bits (256), Expect = 3.550e-20
Identity = 87/299 (29.10%), Postives = 135/299 (45.15%), Query Frame = 1
Query:  139 PINIHQDPRVARVNTYARRPVLPPIGTASSSKKRVKPGRVVSIASQRAALSAQLYDPNYGTYNNQKQELDLSKYLVAPEPQIEDDASERINRQRAPASMPFYGFSDSVTQTDEFAEKPDEVYYKQPLGGADAATEVINTELFDFDREIKPLLDVLIGKTLEQAKLEVERSWELQQIAQATDRFNAERVAEARAQEQLEAAAIERXXXXXXXXXXXXXXALSRWQATQKVAAVCMMRQCWPGVLRGACEALRAAGRWCEPRAIDIADEFMPWLLDSVGARAGALSAAYAVTDGLCEEALR 1035
            P+NI  D RV R + YA + +LPP+     +    +P +V    S          DP  G     ++ +D+   L            E +  +   AS+         TQTD F ++P    Y     G D  T+++  +LF+FD E++P+L+VLIGKTLEQ+ +EV    EL  +    + F A R AE  A +++EAA   +              AL++  A +KVAA    R    G++ G  + L   G + +P   +I  +FMP+L D+V         A A    L E A++
Sbjct:   48 PMNIMYDRRVVRGSNYAPQ-LLPPMSPPEEATSENRPAKVTKRKSSTKLSKPGTPDPVLG-----RKHIDIQTDLYL----------EELTDRMPEASVD--------TQTDAFMDRPQTPLYVPQKSGVDVETQIMEGDLFNFDFEVEPILEVLIGKTLEQSLMEVMEEEELAAMRAHQEHFEAVRNAELIATQRMEAAEQRKLAEKARRLEQERARALAQKAAQEKVAAQTFARDYLGGLIAGVFQGLTNEGVFYDPVEREIETQFMPFLHDAVAQELRKTELARATVRALIESAVQ 322          
BLAST of jgi.p|Trimin1|169233 vs. uniprot
Match: A0A7S0CSQ8_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0CSQ8_MICPS)

HSP 1 Score: 97.8 bits (242), Expect = 9.850e-19
Identity = 115/354 (32.49%), Postives = 165/354 (46.61%), Query Frame = 1
Query:   43 AERTITPRPKYRGDVVQQDDDALTEPDTDDYYPINIHQDPRVARVNTYARRPV--LPPIGTASSSKKRVKPGRVVSIASQRAALSAQLYDPNYGTYNNQKQELDLSKYLVAPEPQIEDDASERINRQRAPASMPFYGFSDSVTQTDEFAEKPDEVYYKQPLGGADAATEVINTELFDFDREIKPLLDVLIGKTLEQAKLEVERSWELQQIAQATDRFNAERVAEARAQEQLEAAAIERXXXXXXXXXXXXXXALSRWQAT-QKVAAVCMMRQCWPGVLRGACEALRAAGRWCEPRAIDIADEFMPWLLDSVGARAGALSAAYAVTDGLCEEALRRGEALAEAHEAAVQREAKEA 1095
            A R    RPK+R             P+T+ YYP NI  D RV R NTYA  PV   PP     + + R KP         RAA   ++          +  ++    YL     ++ D   E                ++ +TQTD F ++P    +     G D  T++ N +LFDFD E++P+L+VL+GKTLEQ  +EV    EL  +    + F   R AE  A +++EAA   R  XXXXXXXXXXX  + R +AT +KVAA    R    G+L    + L  +G + +P   +I  +F+PW  D V A   + +A+    D + ++A     A      A +QRE  EA
Sbjct:   24 AMRGSLKRPKFR---------PQPPPETE-YYPANIMFDRRVIRGNTYAAHPVPAAPP-----TERARSKP---------RAAPRRRIPGTPEPVEGRRHMDIQTEAYLE----ELADTVPE----------------AEVMTQTDAFMDRPPTPLFIPMKIGVDVETQIENGDLFDFDFEVEPILEVLVGKTLEQGLMEVMEEEELAAMRAHQEHFEQIRNAELVATQRMEAAE-RRKAXXXXXXXXXXXQRIEREKATREKVAAQTFARGYTSGLLGNVFDKLYDSGFFYDPVQREIETDFVPWFEDQVVAECSSAAASRKCVDEIIKKAFTDAAAARAEAAANLQREVDEA 332          
BLAST of jgi.p|Trimin1|169233 vs. uniprot
Match: A0A7S3SZA9_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3SZA9_9SPIT)

HSP 1 Score: 96.7 bits (239), Expect = 2.130e-18
Identity = 109/328 (33.23%), Postives = 154/328 (46.95%), Query Frame = 1
Query:  118 PDTDDYYPI--NIHQDPRVARVNTYARRPVLPPIGTASSSKKRVKPGRVVSIASQRAALSAQLYDPNYGTYNNQKQELDLSKYLVAPEPQIEDDASERINRQRAPASMPFYGFSDSVTQTDEFAEKPDEVYYKQPLGGADAATEVINTELFDFDREIKPLLDVLIGKTLEQAKLEVERSWELQQIAQATDRFNAERVAEARAQEQLEAAAIERXXXXXXXXXXXXXXALSRWQATQKVAAVCMMRQCWPGVLRGACEALRAAGRWCEPRAIDIADEFMPWLLDSVGARAGALSAAYAVTDGLCEEAL-RRGEALAEAHEAAVQ-REAK 1089
            P  DD  P+  N+  D R+ R NTYA + VLP   TA  +  + K  R      Q+        D   G  +   Q     + L     ++E D                       TQTD F ++     +     G DA T+V + ELFDFD E++P+L+VL+GKTLEQ+ +EV    EL  + Q  + F   R AE    ++LEAA   R    XXXXXXXXXX       T KVAA    +     +     E L+ AG + +P   ++ ++F+PWLLD++  +   +  A A+ D L   A  R+ E LAEA + A + REAK
Sbjct:    9 PPADDAIPLATNMMFDKRIVRGNTYAAQ-VLPATSTAFDAMAQTK--RETQRKRQKPPPKPSTPDAVAGRKHMDVQTEQYLEELTDRPVEVEVD-----------------------TQTDAFLDQLPAPIFVPMKTGIDAETQVEDGELFDFDAEVEPILEVLVGKTLEQSMMEVMEEEELANMRQHQEHFEQIRNAELAETQRLEAAEQRRVDEKXXXXXXXXXXXAREKAVTAKVAARTFTKGFLSELQSAVVENLKDAGYFYDPLEAEVREDFVPWLLDAMDEQVDQMRIARAIADQLIAAAGGRQAEMLAEAAKMAAELREAK 310          
BLAST of jgi.p|Trimin1|169233 vs. uniprot
Match: A0A7S1CEJ9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CEJ9_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 2.560e-18
Identity = 98/300 (32.67%), Postives = 148/300 (49.33%), Query Frame = 1
Query:  142 INIHQDPRVARVNTYARRPVLPPIGTASSSKKRVKPGRVVSIASQRAALSAQLYDPNYGTYNNQKQELDLSKYLVAPEPQIEDDASERINRQRAPASMPFYGFSDSVTQTDEFAEKPDEVYYKQPLGGADAATEVINTELFDFDREIKPLLDVLIGKTLEQAKLEVERSWELQQIAQATDRFNAERVAEARAQEQLEAAAIERXXXXXXXXXXXXXXALSRWQATQKVAAVCMMRQCWPGVLRGACEALRAAGRWCEPRAIDIADEFMPWLLDSVGARAGALSAAYAVTDGLCEEALRRG 1041
            +NI  DPRV R NTYA   VLPP  +A + ++RV       + ++R  + A              + +D  +++        ++ S+R+               D  TQT+ F ++P    +     G DA T++   ELFDFD E++P+L+VL+GKTLEQ+ +EV    EL+ I +  + F   R AE    ++LEA     XXXXXXXXXXXXXX  +  +  +KVAA          + R     L   G + +P   ++ ++FMPWLL +V     A + A  +T+ L   AL  G
Sbjct:   34 MNIMHDPRVVRGNTYAAH-VLPP--SAQAEQERV----AGEMEARRRRMEATRRGKEVAMPRT-PEPVDGRRHVDIQTENYLEELSDRVPEV------------DDSTQTEAFMDRPPSPLFIPTKTGTDAQTQIEAGELFDFDLEVEPILEVLVGKTLEQSMMEVLEEEELEAIRRHQEEFEQIRNAELAEVQRLEAXXXXXXXXXXXXXXXXXXXVAAEAELREKVAARGFAANYVANLQRSVFGELVEEGHFFDPLTAEVEEKFMPWLLSAVDKELDARARAETITESLIASALSLG 313          
BLAST of jgi.p|Trimin1|169233 vs. uniprot
Match: A0A7S2C2M4_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C2M4_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 4.300e-18
Identity = 70/195 (35.90%), Postives = 108/195 (55.38%), Query Frame = 1
Query:  454 DSVTQTDEFAEKPDEVYYKQPLGGADAATEVINTELFDFDREIKPLLDVLIGKTLEQAKLEVERSWELQQIAQATDRFNAERVAEARAQEQLEAAAIERXXXXXXXXXXXXXXALSRWQATQKVAAVCMMRQCWPGVLRGACEALRAAGRWCEPRAIDIADEFMPWLLDSVGARAGALSAAYAVTDGLCEEALRR 1038
            D+ TQT+ F ++P    +     G D  T++   ++F+FD E+KP+L+VL+GKTL+ + LEV    EL  I +  D F   R AE    ++LEA A  R    XXXXXXXXXX   + +  +KVAA    +     +      AL   G + +P   +++D+F+PWL+DSV     ++  A+A+ D L   AL++
Sbjct:  124 DADTQTEAFLDRPPSPLFVPAKSGVDKGTQIDTDQVFNFDAEVKPILEVLVGKTLQVSMLEVMEEEELSAIRKRQDEFEQMRNAELMEVQRLEAEATRRFAEKXXXXXXXXXXTRLQQELKEKVAARSFAKSYLTDLHSDVFMALEETGHFYDPVRKEVSDDFLPWLMDSVVTEVDSVQTAHALADDLLTVALQK 318          
BLAST of jgi.p|Trimin1|169233 vs. uniprot
Match: UPI000A2AA1E0 (radial spoke head protein 3 homolog n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2AA1E0)

HSP 1 Score: 96.7 bits (239), Expect = 4.550e-18
Identity = 100/332 (30.12%), Postives = 156/332 (46.99%), Query Frame = 1
Query:   49 RTITPRPKYRGDVVQQDDDALTEPDTDDYYPINIHQDPRVARVNTYARRPVLPPIGTASSSKKRVKPGRVVSIASQRAA--LSAQLYDPNYGTYNNQKQELDLSKYLVAPEPQIEDDASERINRQRAPASMPFYGFSDSVTQTDEFAEKPDEVYYKQPLGGADAATEVINTELFDFDREIKPLLDVLIGKTLEQAKLEVERSWELQQIAQATDRFNAERVAEARAQEQLEAAAIERXXXXXXXXXXXXXXALSRWQATQKVAAVCMMRQCWPGVLRGACEALRAAGRWCEPRAIDIADEFMPWLLDSVGARAGALSAAYAVTDGLCEEALRR 1038
            R +  R K+R  + QQ++  +           NI  D R+ R NTYA+R +           +R +  R  +IA +RA   L  +  +P  G     ++ +D+   L        ++ S+R+              ++  TQTD F ++P    +     G D AT+++  ELFDFD E+KP+L+VL+GKT+EQA LEV    EL  +     RF   R AE    ++LE      XXXXXXXXXXXX   L   +  +K+AA    +     ++     +L   G + +P   D+   FMPWL++ VG       AA  + D + +E + +
Sbjct:   21 RPVQQRKKFRDPLTQQNESPMPYG--------NIMYDKRIVRGNTYAQRTLPASSQPDPIEIQRQQEMRRRAIARKRAKEQLKPRSPEPVEG-----RKHIDVQTELYL------EELSDRVEE------------AEVETQTDAFLDRPPSPLFIPAKTGVDVATQILEGELFDFDIEVKPILEVLVGKTVEQALLEVMEEEELANLRAQQRRFEELRNAELVETQRLEEQXXXXXXXXXXXXXXXXEVLLKEKETGEKIAARAFAQSYLADLVPSVFGSLNENGYFYDPVERDVEQYFMPWLMERVGENLNKSMAARHLLDSIIKEVVAK 321          
BLAST of jgi.p|Trimin1|169233 vs. uniprot
Match: A0A7K9CGI6_9PICI (RSPH3 protein (Fragment) n=4 Tax=Piciformes TaxID=9219 RepID=A0A7K9CGI6_9PICI)

HSP 1 Score: 96.3 bits (238), Expect = 5.820e-18
Identity = 88/306 (28.76%), Postives = 136/306 (44.44%), Query Frame = 1
Query:   49 RTITPRPKYRGDVVQQDDDALTEPDTDDYYPINIHQDPRVARVNTYARRPVLPPIGTASSSKKRVKPGRVVSIASQRAALSAQLYDPNYGTYNNQKQELDLSKYLVAPEPQIEDDASERINRQRAPASMPFYGFSDSVTQTDEFAEKPDEVYYKQPLGGADAATEVINTELFDFDREIKPLLDVLIGKTLEQAKLEVERSWELQQIAQATDRFNAERVAEARAQEQLEAAAIERXXXXXXXXXXXXXXALSRWQATQKVAAVCMMRQCWPGVLRGACEALRAAGRWCEPRAIDIADEFMPWLLDSV 966
            R +  RPKYR       D A  E +   Y   N+  D RV R NTYA R V+P    +    +R +  R  ++A +RA    QL  P         + ++  +++        ++ S+RI              +D+  QTD F ++P   ++     G D AT++   ELFDFD E+KP+L+VL+GKT+EQA LEV    EL Q+      +   R AE    ++LE                       + + T+K+AA    +     ++      LR +G + +P   DI  EF+PWL+  V
Sbjct:   28 RALPARPKYR----PPPDPAEPEKELVRY--ANLMYDRRVVRGNTYALR-VVPSSQPSPLEIQRQREARKRALARKRAKEQMQLRTP---------EPVEGREHIYVQTELYLEEISDRIIE------------ADAECQTDAFLDRPPTPFFIPAKTGKDVATQIEEGELFDFDIEVKPILEVLVGKTVEQALLEVMEEEELAQLWARQRAYAERRDAELAEVQRLEEQDRRYREEKERRRIQHMEMLQKQKETTEKIAAHAFAQHYLADLIPSVFNNLRESGFFYDPIERDIETEFLPWLMTEV 305          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|169233 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YQI5_9STRA3.090e-313100.00Radial spoke protein 3-domain-containing protein n... [more]
D7FP98_ECTSI1.160e-3436.88Flagellar radial spoke protein n=1 Tax=Ectocarpus ... [more]
A0A2R5GXC9_9STRA1.970e-2031.96Radial spoke head protein 3-like n=1 Tax=Hondaea f... [more]
A0A1Y1HK05_KLENI3.550e-2029.10Uncharacterized protein n=1 Tax=Klebsormidium nite... [more]
A0A7S0CSQ8_MICPS9.850e-1932.49Hypothetical protein (Fragment) n=1 Tax=Micromonas... [more]
A0A7S3SZA9_9SPIT2.130e-1833.23Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
A0A7S1CEJ9_9STRA2.560e-1832.67Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7S2C2M4_9STRA4.300e-1835.90Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
UPI000A2AA1E04.550e-1830.12radial spoke head protein 3 homolog n=1 Tax=Exaipt... [more]
A0A7K9CGI6_9PICI5.820e-1828.76RSPH3 protein (Fragment) n=4 Tax=Piciformes TaxID=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_62contigContig_62:514624..516096 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|169233|e_gw1.62.201.1
DescriptionRadial spoke protein 3
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGs2BDNM@1|root,2S132@2759|Eukaryota
Evalue1.9e-35
Seed ortholog2880.D7FP98
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRadial spoke 3
Ec32 orthologEc-08_000250.1
TranscriptId169555
TrackFilteredModels1
ProteinId169233
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|169233gene_6536Tribonema minus UTEX_B_3156 geneContig_62 514624..516096 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|169233Trimin1|169233|e_gw1.62.201.1Tribonema minus UTEX_B_3156 polypeptideContig_62 514624..516096 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6536_2exon_6536_2Tribonema minus UTEX_B_3156 exonContig_62 514624..514946 -
exon_6536_1exon_6536_1Tribonema minus UTEX_B_3156 exonContig_62 515022..516096 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6536CDS_6536Tribonema minus UTEX_B_3156 CDSContig_62 515022..516096 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6536 ID=mRNA_6536|Name=jgi.p|Trimin1|169233|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1398bp|location=Sequence derived from alignment at Contig_62:514624..516096- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTAGCACTACAGTTGGCGGAGGCTACGGCGGACGGGTGGCAGAGCG
AACGATCACACCACGGCCAAAATACAGAGGTGATGTAGTGCAGCAGGACG
ACGATGCCCTGACAGAGCCCGACACCGACGACTACTATCCCATCAACATA
CACCAGGACCCACGAGTAGCGCGCGTTAATACGTACGCTCGACGACCTGT
TCTGCCGCCTATTGGCACGGCGAGTTCGTCGAAGAAGAGGGTCAAGCCAG
GCAGGGTCGTGAGCATCGCAAGCCAGCGCGCGGCTCTGTCGGCGCAGCTG
TACGACCCCAACTATGGCACCTACAACAATCAGAAACAAGAGTTAGACTT
GAGCAAATACCTTGTGGCACCAGAGCCGCAGATCGAAGACGACGCCAGCG
AGCGCATCAATCGGCAGCGCGCGCCAGCGAGCATGCCTTTCTACGGCTTC
AGCGACAGCGTGACGCAAACAGATGAATTCGCAGAGAAGCCGGACGAAGT
CTACTACAAGCAGCCACTGGGCGGAGCCGACGCTGCGACGGAGGTCATCA
ACACGGAACTATTTGATTTCGACCGCGAAATCAAGCCCCTGCTGGACGTG
CTCATCGGCAAGACCCTAGAGCAGGCCAAGCTGGAGGTGGAGCGGAGCTG
GGAACTTCAGCAGATTGCGCAGGCCACGGACCGCTTCAACGCGGAGCGCG
TCGCCGAGGCGCGCGCGCAGGAGCAGCTGGAGGCGGCCGCAATCGAGCGG
CGGCGTGCGGAGGAGGCGCAGCGCCGCGCCGCAGCCGCAGCAGCGCTCAG
TCGCTGGCAGGCCACGCAGAAGGTCGCCGCCGTGTGCATGATGCGCCAGT
GCTGGCCGGGCGTGCTGCGCGGCGCGTGCGAGGCGCTTCGCGCGGCGGGG
CGGTGGTGCGAGCCCAGGGCCATCGATATTGCCGATGAGTTCATGCCGTG
GCTGCTGGACAGTGTCGGCGCGCGTGCGGGGGCGCTCTCGGCTGCCTACG
CAGTGACGGACGGCCTGTGCGAAGAGGCGCTGAGGAGAGGGGAGGCGTTG
GCGGAGGCGCACGAGGCGGCGGTGCAGCGGGAGGCGAAGGAGGCGGCCGC
CGCCAGTGCTGCCGCCGGTGCGACGACGCAGTTGTGGGTGGAAGGGGCGG
CAGTGGGGTTGGAAGGGGGTAAACTGGGCCCGGTAACTGTCACTAATGAT
AGCTCCATCGCGGCAGTAGAGAAGTCAATCGCAGACTGGTTTGAGGAAAA
TGGCCTGGCAGCAGAGGTGCCAGAGGGCGGTTTCCTGTCACTGTCTTTTG
ACTGCTCTGGGGTGGACGCAGAGAGTGTGACGCTAACAGAGCTCAAGGAG
CGGGGCGGGCTTGCGGAAGCGGAGCAAGTGACGTTGGGGAGCGCTTAG
back to top

protein sequence of jgi.p|Trimin1|169233

>Trimin1|169233|e_gw1.62.201.1 ID=Trimin1|169233|e_gw1.62.201.1|Name=jgi.p|Trimin1|169233|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=466bp
MRSTTVGGGYGGRVAERTITPRPKYRGDVVQQDDDALTEPDTDDYYPINI
HQDPRVARVNTYARRPVLPPIGTASSSKKRVKPGRVVSIASQRAALSAQL
YDPNYGTYNNQKQELDLSKYLVAPEPQIEDDASERINRQRAPASMPFYGF
SDSVTQTDEFAEKPDEVYYKQPLGGADAATEVINTELFDFDREIKPLLDV
LIGKTLEQAKLEVERSWELQQIAQATDRFNAERVAEARAQEQLEAAAIER
RRAEEAQRRAAAAAALSRWQATQKVAAVCMMRQCWPGVLRGACEALRAAG
RWCEPRAIDIADEFMPWLLDSVGARAGALSAAYAVTDGLCEEALRRGEAL
AEAHEAAVQREAKEAAAASAAAGATTQLWVEGAAVGLEGGKLGPVTVTND
SSIAAVEKSIADWFEENGLAAEVPEGGFLSLSFDCSGVDAESVTLTELKE
RGGLAEAEQVTLGSA*
back to top

mRNA from alignment at Contig_62:514624..516096-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6536 ID=mRNA_6536|Name=jgi.p|Trimin1|169233|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1473bp|location=Sequence derived from alignment at Contig_62:514624..516096- (Tribonema minus UTEX_B_3156 )
ATGCGTAGCACTACAGTTGGCGGAGGCTACGGCGGACGGGTGGCAGAGCG AACGATCACACCACGGCCAAAATACAGAGGTGATGTAGTGCAGCAGGACG ACGATGCCCTGACAGAGCCCGACACCGACGACTACTATCCCATCAACATA CACCAGGACCCACGAGTAGCGCGCGTTAATACGTACGCTCGACGACCTGT TCTGCCGCCTATTGGCACGGCGAGTTCGTCGAAGAAGAGGGTCAAGCCAG GCAGGGTCGTGAGCATCGCAAGCCAGCGCGCGGCTCTGTCGGCGCAGCTG TACGACCCCAACTATGGCACCTACAACAATCAGAAACAAGAGTTAGACTT GAGCAAATACCTTGTGGCACCAGAGCCGCAGATCGAAGACGACGCCAGCG AGCGCATCAATCGGCAGCGCGCGCCAGCGAGCATGCCTTTCTACGGCTTC AGCGACAGCGTGACGCAAACAGATGAATTCGCAGAGAAGCCGGACGAAGT CTACTACAAGCAGCCACTGGGCGGAGCCGACGCTGCGACGGAGGTCATCA ACACGGAACTATTTGATTTCGACCGCGAAATCAAGCCCCTGCTGGACGTG CTCATCGGCAAGACCCTAGAGCAGGCCAAGCTGGAGGTGGAGCGGAGCTG GGAACTTCAGCAGATTGCGCAGGCCACGGACCGCTTCAACGCGGAGCGCG TCGCCGAGGCGCGCGCGCAGGAGCAGCTGGAGGCGGCCGCAATCGAGCGG CGGCGTGCGGAGGAGGCGCAGCGCCGCGCCGCAGCCGCAGCAGCGCTCAG TCGCTGGCAGGCCACGCAGAAGGTCGCCGCCGTGTGCATGATGCGCCAGT GCTGGCCGGGCGTGCTGCGCGGCGCGTGCGAGGCGCTTCGCGCGGCGGGG CGGTGGTGCGAGCCCAGGGCCATCGATATTGCCGATGAGTTCATGCCGTG GCTGCTGGACAGTGTCGGCGCGCGTGCGGGGGCGCTCTCGGCTGCCTACG CAGTGACGGACGGCCTGTGCGAAGAGGCGCTGAGGAGAGGGGAGGCGTTG GCGGAGGCGCACGAGGCGGCGGTGCGTGAGGCCGCAAGGGGGAGGGCGGC GGCGGCAGCAGCGGCCGCGGCGGCGGCGAAAGCGGCGGCGGAAGCGGCAG AGCGGGAGGCGAAGGAGGCGGCCGCCGCCAGTGCTGCCGCCGGTGCGACG ACGCAGTTGTGGGTGGAAGGGGCGGCAGTGGGGTTGGAAGGGGGTAAACT GGGCCCGGTAACTGTCACTAATGATAGCTCCATCGCGGCAGTAGAGAAGT CAATCGCAGACTGGTTTGAGGAAAATGGCCTGGCAGCAGAGGTGCCAGAG GGCGGTTTCCTGTCACTGTCTTTTGACTGCTCTGGGGTGGACGCAGAGAG TGTGACGCTAACAGAGCTCAAGGAGCGGGGCGGGCTTGCGGAAGCGGAGC AAGTGACGTTGGGGAGCGCTTAG
back to top

Coding sequence (CDS) from alignment at Contig_62:514624..516096-

>mRNA_6536 ID=mRNA_6536|Name=jgi.p|Trimin1|169233|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1398bp|location=Sequence derived from alignment at Contig_62:514624..516096- (Tribonema minus UTEX_B_3156 )
ATGCGTAGCACTACAGTTGGCGGAGGCTACGGCGGACGGGTGGCAGAGCG
AACGATCACACCACGGCCAAAATACAGAGGTGATGTAGTGCAGCAGGACG
ACGATGCCCTGACAGAGCCCGACACCGACGACTACTATCCCATCAACATA
CACCAGGACCCACGAGTAGCGCGCGTTAATACGTACGCTCGACGACCTGT
TCTGCCGCCTATTGGCACGGCGAGTTCGTCGAAGAAGAGGGTCAAGCCAG
GCAGGGTCGTGAGCATCGCAAGCCAGCGCGCGGCTCTGTCGGCGCAGCTG
TACGACCCCAACTATGGCACCTACAACAATCAGAAACAAGAGTTAGACTT
GAGCAAATACCTTGTGGCACCAGAGCCGCAGATCGAAGACGACGCCAGCG
AGCGCATCAATCGGCAGCGCGCGCCAGCGAGCATGCCTTTCTACGGCTTC
AGCGACAGCGTGACGCAAACAGATGAATTCGCAGAGAAGCCGGACGAAGT
CTACTACAAGCAGCCACTGGGCGGAGCCGACGCTGCGACGGAGGTCATCA
ACACGGAACTATTTGATTTCGACCGCGAAATCAAGCCCCTGCTGGACGTG
CTCATCGGCAAGACCCTAGAGCAGGCCAAGCTGGAGGTGGAGCGGAGCTG
GGAACTTCAGCAGATTGCGCAGGCCACGGACCGCTTCAACGCGGAGCGCG
TCGCCGAGGCGCGCGCGCAGGAGCAGCTGGAGGCGGCCGCAATCGAGCGG
CGGCGTGCGGAGGAGGCGCAGCGCCGCGCCGCAGCCGCAGCAGCGCTCAG
TCGCTGGCAGGCCACGCAGAAGGTCGCCGCCGTGTGCATGATGCGCCAGT
GCTGGCCGGGCGTGCTGCGCGGCGCGTGCGAGGCGCTTCGCGCGGCGGGG
CGGTGGTGCGAGCCCAGGGCCATCGATATTGCCGATGAGTTCATGCCGTG
GCTGCTGGACAGTGTCGGCGCGCGTGCGGGGGCGCTCTCGGCTGCCTACG
CAGTGACGGACGGCCTGTGCGAAGAGGCGCTGAGGAGAGGGGAGGCGTTG
GCGGAGGCGCACGAGGCGGCGGTGCAGCGGGAGGCGAAGGAGGCGGCCGC
CGCCAGTGCTGCCGCCGGTGCGACGACGCAGTTGTGGGTGGAAGGGGCGG
CAGTGGGGTTGGAAGGGGGTAAACTGGGCCCGGTAACTGTCACTAATGAT
AGCTCCATCGCGGCAGTAGAGAAGTCAATCGCAGACTGGTTTGAGGAAAA
TGGCCTGGCAGCAGAGGTGCCAGAGGGCGGTTTCCTGTCACTGTCTTTTG
ACTGCTCTGGGGTGGACGCAGAGAGTGTGACGCTAACAGAGCTCAAGGAG
CGGGGCGGGCTTGCGGAAGCGGAGCAAGTGACGTTGGGGAGCGCTTAG
back to top