mRNA_6528 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|81895
Unique NamemRNA_6528
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|81895 vs. uniprot
Match: A0A835YMX0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMX0_9STRA)

HSP 1 Score: 320 bits (821), Expect = 2.140e-110
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 1 
Query:   76 MPAPWRKSVLYFPWLLRTSTPCAASGVRMQCADAAWRRRFRAASAAEQCHSSWGGGGEEARGGEAQWSNGCLCQTRVFVRLICKCQIAGCPGYRMRLCALMLMPTGWCNWCXXXXXXACCVVLCLPSALCCFAICHGSLAGSVLKPGHLPVWLL 537
            MPAPWRKSVLYFPWLLRTSTPCAASGVRMQCADAAWRRRFRAASAAEQCHSSWGGGGEEARGGEAQWSNGCLCQTRVFVRLICKCQIAGCPGYRMRLCALMLMPTGWCNWCXXXXXXACCVVLCLPSALCCFAICHGSLAGSVLKPGHLPVWLL
Sbjct:    1 MPAPWRKSVLYFPWLLRTSTPCAASGVRMQCADAAWRRRFRAASAAEQCHSSWGGGGEEARGGEAQWSNGCLCQTRVFVRLICKCQIAGCPGYRMRLCALMLMPTGWCNWCXXXXXXACCVVLCLPSALCCFAICHGSLAGSVLKPGHLPVWLL 154
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|81895 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YMX0_9STRA2.140e-110100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_62contigContig_62:456019..456591 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|81895|CE81894_46
Hectar predicted targeting categorysignal peptide
TranscriptId82217
TrackFilteredModels1
ProteinId81895
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|81895gene_6528Tribonema minus UTEX_B_3156 geneContig_62 456019..456591 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6528_1exon_6528_1Tribonema minus UTEX_B_3156 exonContig_62 456019..456591 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_6528UTR5_6528Tribonema minus UTEX_B_3156 five_prime_UTRContig_62 456019..456093 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6528CDS_6528Tribonema minus UTEX_B_3156 CDSContig_62 456094..456558 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_6528UTR3_6528Tribonema minus UTEX_B_3156 three_prime_UTRContig_62 456559..456591 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|81895Trimin1|81895|CE81894_46Tribonema minus UTEX_B_3156 polypeptideContig_62 456094..456558 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6528 ID=mRNA_6528|Name=jgi.p|Trimin1|81895|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=573bp|location=Sequence derived from alignment at Contig_62:456019..456591+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CAAGGTTCGAGAGAGCACGACTGTGCTGTTGAAGCCTTAGCAGACTCCCT
ATTTTCCAGATGAACGTTATCCAACATGCCGGCGCCTTGGCGAAAAAGCG
TTCTATACTTTCCCTGGCTACTGAGGACAAGCACCCCGTGCGCCGCAAGC
GGTGTGCGGATGCAGTGTGCGGATGCAGCTTGGCGGCGACGTTTTCGTGC
CGCCTCTGCTGCGGAGCAATGCCACAGCAGCTGGGGAGGAGGAGGGGAAG
AGGCAAGGGGGGGGGAGGCTCAATGGTCCAATGGTTGTCTGTGCCAGACG
AGGGTATTTGTGAGGTTGATTTGTAAGTGTCAGATTGCAGGTTGTCCTGG
GTATCGCATGAGGCTTTGTGCTCTCATGCTGATGCCAACAGGGTGGTGCA
ACTGGTGCTGGTGCCACATTTGTTGGGCCTGCTGCGTAGTGCTATGTTTA
CCCAGTGCTTTATGCTGCTTTGCAATTTGCCACGGCTCTTTGGCGGGGTC
AGTGCTCAAACCAGGACATTTACCTGTGTGGCTTTTGTGAAGATCAAATG
CATCCTGCGGAGCTGAGCTTCTG
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protein sequence of jgi.p|Trimin1|81895

>Trimin1|81895|CE81894_46 ID=Trimin1|81895|CE81894_46|Name=jgi.p|Trimin1|81895|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=155bp
MPAPWRKSVLYFPWLLRTSTPCAASGVRMQCADAAWRRRFRAASAAEQCH
SSWGGGGEEARGGEAQWSNGCLCQTRVFVRLICKCQIAGCPGYRMRLCAL
MLMPTGWCNWCWCHICWACCVVLCLPSALCCFAICHGSLAGSVLKPGHLP
VWLL*
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mRNA from alignment at Contig_62:456019..456591+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6528 ID=mRNA_6528|Name=jgi.p|Trimin1|81895|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=573bp|location=Sequence derived from alignment at Contig_62:456019..456591+ (Tribonema minus UTEX_B_3156 )
CAAGGTTCGAGAGAGCACGACTGTGCTGTTGAAGCCTTAGCAGACTCCCT
ATTTTCCAGATGAACGTTATCCAACATGCCGGCGCCTTGGCGAAAAAGCG
TTCTATACTTTCCCTGGCTACTGAGGACAAGCACCCCGTGCGCCGCAAGC
GGTGTGCGGATGCAGTGTGCGGATGCAGCTTGGCGGCGACGTTTTCGTGC
CGCCTCTGCTGCGGAGCAATGCCACAGCAGCTGGGGAGGAGGAGGGGAAG
AGGCAAGGGGGGGGGAGGCTCAATGGTCCAATGGTTGTCTGTGCCAGACG
AGGGTATTTGTGAGGTTGATTTGTAAGTGTCAGATTGCAGGTTGTCCTGG
GTATCGCATGAGGCTTTGTGCTCTCATGCTGATGCCAACAGGGTGGTGCA
ACTGGTGCTGGTGCCACATTTGTTGGGCCTGCTGCGTAGTGCTATGTTTA
CCCAGTGCTTTATGCTGCTTTGCAATTTGCCACGGCTCTTTGGCGGGGTC
AGTGCTCAAACCAGGACATTTACCTGTGTGGCTTTTGTGAAGATCAAATG
CATCCTGCGGAGCTGAGCTTCTG
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Coding sequence (CDS) from alignment at Contig_62:456019..456591+

>mRNA_6528 ID=mRNA_6528|Name=jgi.p|Trimin1|81895|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=465bp|location=Sequence derived from alignment at Contig_62:456019..456591+ (Tribonema minus UTEX_B_3156 )
ATGCCGGCGCCTTGGCGAAAAAGCGTTCTATACTTTCCCTGGCTACTGAG
GACAAGCACCCCGTGCGCCGCAAGCGGTGTGCGGATGCAGTGTGCGGATG
CAGCTTGGCGGCGACGTTTTCGTGCCGCCTCTGCTGCGGAGCAATGCCAC
AGCAGCTGGGGAGGAGGAGGGGAAGAGGCAAGGGGGGGGGAGGCTCAATG
GTCCAATGGTTGTCTGTGCCAGACGAGGGTATTTGTGAGGTTGATTTGTA
AGTGTCAGATTGCAGGTTGTCCTGGGTATCGCATGAGGCTTTGTGCTCTC
ATGCTGATGCCAACAGGGTGGTGCAACTGGTGCTGGTGCCACATTTGTTG
GGCCTGCTGCGTAGTGCTATGTTTACCCAGTGCTTTATGCTGCTTTGCAA
TTTGCCACGGCTCTTTGGCGGGGTCAGTGCTCAAACCAGGACATTTACCT
GTGTGGCTTTTGTGA
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