mRNA_6525 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|169218
Unique NamemRNA_6525
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|169218 vs. uniprot
Match: A0A836CAE2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAE2_9STRA)

HSP 1 Score: 315 bits (808), Expect = 1.070e-105
Identity = 258/258 (100.00%), Postives = 258/258 (100.00%), Query Frame = 1 
Query:    1 MLPWLHPLTDLQLPGLGLRDEDLRGVALDALRGLTRMNMAKNQLETFPSAVLRLHRXXXXXXXXXXXXXXXXXXXXXXXXXXXXLMCNKLSGAVXXXXXXXXXXEVLGLRTNSLTALPTTIGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLELCRLAANPSLSEVPSEITCLPSLAWLSLAGSLWSPGLGMWGEGSLENLKRTDLRFGKKVRGGCARRSMNIHTVRTAYELCVNCM 774
            MLPWLHPLTDLQLPGLGLRDEDLRGVALDALRGLTRMNMAKNQLETFPSAVLRLHRXXXXXXXXXXXXXXXXXXXXXXXXXXXXLMCNKLSGAVXXXXXXXXXXEVLGLRTNSLTALPTTIGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLELCRLAANPSLSEVPSEITCLPSLAWLSLAGSLWSPGLGMWGEGSLENLKRTDLRFGKKVRGGCARRSMNIHTVRTAYELCVNCM
Sbjct:    1 MLPWLHPLTDLQLPGLGLRDEDLRGVALDALRGLTRMNMAKNQLETFPSAVLRLHRXXXXXXXXXXXXXXXXXXXXXXXXXXXXLMCNKLSGAVXXXXXXXXXXEVLGLRTNSLTALPTTIGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLELCRLAANPSLSEVPSEITCLPSLAWLSLAGSLWSPGLGMWGEGSLENLKRTDLRFGKKVRGGCARRSMNIHTVRTAYELCVNCM 258
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|169218 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CAE2_9STRA1.070e-105100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_62contigContig_62:438362..439915 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|169218|e_gw1.62.46.1
Hectar predicted targeting categoryother localisation
TranscriptId169540
TrackFilteredModels1
ProteinId169218
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|169218gene_6525Tribonema minus UTEX_B_3156 geneContig_62 438362..439915 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|169218Trimin1|169218|e_gw1.62.46.1Tribonema minus UTEX_B_3156 polypeptideContig_62 438362..439915 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6525_3exon_6525_3Tribonema minus UTEX_B_3156 exonContig_62 438362..438608 -
exon_6525_2exon_6525_2Tribonema minus UTEX_B_3156 exonContig_62 439163..439278 -
exon_6525_1exon_6525_1Tribonema minus UTEX_B_3156 exonContig_62 439502..439915 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6525CDS_6525Tribonema minus UTEX_B_3156 CDSContig_62 439502..439915 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6525 ID=mRNA_6525|Name=jgi.p|Trimin1|169218|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=777bp|location=Sequence derived from alignment at Contig_62:438362..439915- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCCCGTGGTTGCACCCATTGACAGACCTGCAACTGCCAGGTTTGGG
CTTGCGCGATGAAGACCTGAGGGGCGTAGCACTGGATGCTTTGCGAGGAC
TGACACGTATGAACATGGCCAAGAACCAGCTGGAGACTTTCCCGTCAGCA
GTGCTGCGCCTGCACAGGCTCACCGAGCTCGACTTCAGCCACAACAAGAT
GGCGGCGGTGCCCCAGGGCATCGGGAAGCTCAGAAGGCTCAGGAGGCTAA
ACCTCATGTGCAACAAGCTTTCTGGAGCTGTGCCGGAGAGCTTGGGGCGC
TTGACCCAGCTTGAGGTGCTGGGCTTGAGGACCAACAGCTTGACGGCGCT
GCCGACCACCATAGGATGCTGCGTGAGCCTGGTGGAGCTATACGTGACAG
AAAACAATCTCAAGGCACTTCCTGCAAGCCTCGGCCAGTGCAAGCGGTTG
CGGAAGCTACAGGCCAGCTTCAACGACCTCACGACCCTGCCTGTTGAGAT
GGCGGGATGCGAGTCACTTGAGCTTTGTAGACTTGCGGCGAACCCATCTC
TCTCGGAGGTGCCGTCGGAGATCACGTGTCTGCCATCGCTGGCGTGGCTC
AGCCTTGCGGGCAGCTTGTGGAGCCCTGGTCTCGGAATGTGGGGGGAGGG
GTCGCTGGAGAACTTGAAGCGCACAGACTTGAGGTTCGGGAAGAAGGTGA
GAGGCGGATGCGCTCGGCGGTCGATGAATATTCATACAGTCCGAACGGCA
TATGAACTGTGTGTGAACTGCATGTGA
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protein sequence of jgi.p|Trimin1|169218

>Trimin1|169218|e_gw1.62.46.1 ID=Trimin1|169218|e_gw1.62.46.1|Name=jgi.p|Trimin1|169218|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=259bp
MLPWLHPLTDLQLPGLGLRDEDLRGVALDALRGLTRMNMAKNQLETFPSA
VLRLHRLTELDFSHNKMAAVPQGIGKLRRLRRLNLMCNKLSGAVPESLGR
LTQLEVLGLRTNSLTALPTTIGCCVSLVELYVTENNLKALPASLGQCKRL
RKLQASFNDLTTLPVEMAGCESLELCRLAANPSLSEVPSEITCLPSLAWL
SLAGSLWSPGLGMWGEGSLENLKRTDLRFGKKVRGGCARRSMNIHTVRTA
YELCVNCM*
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mRNA from alignment at Contig_62:438362..439915-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6525 ID=mRNA_6525|Name=jgi.p|Trimin1|169218|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1554bp|location=Sequence derived from alignment at Contig_62:438362..439915- (Tribonema minus UTEX_B_3156 )
ATGCTCCCGTGGTTGCACCCATTGACAGACCTGCAACTGCCAGGTTTGGG
CTTGCGCGATGAAGACCTGAGGGGCGTAGCACTGGATGCTTTGCGAGGAC
TGACACGTATGAACATGGCCAAGAACCAGCTGGAGACTTTCCCGTCAGCA
GTGCTGCGCCTGCACAGGCTCACCGAGCTCGACTTCAGCCACAACAAGAT
GGCGGCGGTGCCCCAGGGCATCGGGAAGCTCAGAAGGCTCAGGAGGCTAA
ACCTCATGTGCAACAAGCTTTCTGGAGCTGTGCCGGAGAGCTTGGGGCGC
TTGACCCAGCTTGAGGTGCTGGGCTTGAGGACCAACAGCTTGACGGCGCT
GCCGACCACCATAGGATGCTGCGTGAGCCTGGTGGAGCTATACGTGACAG
AAAACAATCTCAAGGTCCGTTCATGTTGCTCCCATTCCTTCAAAATAGCC
TGCTGCCGCGTGCCCGACACGTTGTTGTTGAGAACTCAAGGGGCCTTCTC
ACAGTGCAAGCGGTGATGCTTAGGCTTGCACAGCGTTGACCAATCAGATC
GGCGCTGCCACGGGGTACCGTGCGTGCGCACTGGTCCTTCCTGCACGCAC
CGATTGCCCTCATAAAGCCTGTTTGCCGCATGAGCAGGCACTTCCTGCAA
GCCTCGGCCAGTGCAAGCGGTTGCGGAAGCTACAGGCCAGCTTCAACGAC
CTCACGACCCTGCCTGTTGAGATGGCGGGATGCGAGTCACTTGAGCTTTG
TAGGTGAGCACGTCAACTGCAATACACCTTGATAAGGCTACTTTTTGTGA
GGCTATTTATGCAGCCAGGATCTGGTCTGATGTCAATAAGCAAATGTTCT
ACAGCGTGGCTCAATAATTGTGTGCAGCCTCTGGCTGGTGCTGGCATTCT
TTAGCTCAAGAGTTCATGGGCTGACGGCTCACAGTCAACACGCCACTGTG
TACCGTTTCTCCACAAGCGGGCCCAGTGTTCTCCCGTCCATGGACGTCGA
AACAGTGTGTTTGGGAGCCACCATATGTCCGCTGGTGCTACAGTGGCCGC
AACCTCGATCAAACTACATTTTGATCCACAAACGATAAGTTACGTGCGCA
ATGCATCCTGAGACTGAACTACTGCTCACACCTGGCCGCAGGTTGCGGAG
GCATGCCAGCATCATGCTACACTTGAACAGGCAGTTGAGTTCAGCAGTGA
CCATACATGACGCTGCCACTGAACAAAGGCATGCCACTGTTTTGCTACAT
ACACGTGTACTAGCCGCTGAAATTGGAGGTTTCCTGCAACGTGACTGCCA
TTCGCAGACTTGCGGCGAACCCATCTCTCTCGGAGGTGCCGTCGGAGATC
ACGTGTCTGCCATCGCTGGCGTGGCTCAGCCTTGCGGGCAGCTTGTGGAG
CCCTGGTCTCGGAATGTGGGGGGAGGGGTCGCTGGAGAACTTGAAGCGCA
CAGACTTGAGGTTCGGGAAGAAGGTGAGAGGCGGATGCGCTCGGCGGTCG
ATGAATATTCATACAGTCCGAACGGCATATGAACTGTGTGTGAACTGCAT
GTGA
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Coding sequence (CDS) from alignment at Contig_62:438362..439915-

>mRNA_6525 ID=mRNA_6525|Name=jgi.p|Trimin1|169218|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=777bp|location=Sequence derived from alignment at Contig_62:438362..439915- (Tribonema minus UTEX_B_3156 )
ATGCTCCCGTGGTTGCACCCATTGACAGACCTGCAACTGCCAGGTTTGGG
CTTGCGCGATGAAGACCTGAGGGGCGTAGCACTGGATGCTTTGCGAGGAC
TGACACGTATGAACATGGCCAAGAACCAGCTGGAGACTTTCCCGTCAGCA
GTGCTGCGCCTGCACAGGCTCACCGAGCTCGACTTCAGCCACAACAAGAT
GGCGGCGGTGCCCCAGGGCATCGGGAAGCTCAGAAGGCTCAGGAGGCTAA
ACCTCATGTGCAACAAGCTTTCTGGAGCTGTGCCGGAGAGCTTGGGGCGC
TTGACCCAGCTTGAGGTGCTGGGCTTGAGGACCAACAGCTTGACGGCGCT
GCCGACCACCATAGGATGCTGCGTGAGCCTGGTGGAGCTATACGTGACAG
AAAACAATCTCAAGGCACTTCCTGCAAGCCTCGGCCAGTGCAAGCGGTTG
CGGAAGCTACAGGCCAGCTTCAACGACCTCACGACCCTGCCTGTTGAGAT
GGCGGGATGCGAGTCACTTGAGCTTTGTAGACTTGCGGCGAACCCATCTC
TCTCGGAGGTGCCGTCGGAGATCACGTGTCTGCCATCGCTGGCGTGGCTC
AGCCTTGCGGGCAGCTTGTGGAGCCCTGGTCTCGGAATGTGGGGGGAGGG
GTCGCTGGAGAACTTGAAGCGCACAGACTTGAGGTTCGGGAAGAAGGTGA
GAGGCGGATGCGCTCGGCGGTCGATGAATATTCATACAGTCCGAACGGCA
TATGAACTGTGTGTGAACTGCATGTGA
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