mRNA_6520 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|169207
Unique NamemRNA_6520
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|169207 vs. uniprot
Match: A0A835YQH5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQH5_9STRA)

HSP 1 Score: 400 bits (1028), Expect = 4.120e-141
Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 1 
Query:    1 MQSWVHFAASAAAAATAGSAGHPPLLWQGEEERKPLQHWCDPELSYAVYMDICNGDMFVNAHGACFALADGDWCWVARAHKRSAFTAAAARAASGARTPEGDESPEIAALTAILCVNAGIDVVPELMASAAEQTRAWLDGSRTADEADLPLQVKVAFCDGPSIIYYSIHNAIEPTGDAKSGRNARSGGQKHRQRSQDVR 597
            MQSWVHFAASAAAAATAGSAGHPPLLWQGEEERKPLQHWCDPELSYAVYMDICNGDMFVNAHGACFALADGDWCWVARAHKRSAFTAAAARAASGARTPEGDESPEIAALTAILCVNAGIDVVPELMASAAEQTRAWLDGSRTADEADLPLQVKVAFCDGPSIIYYSIHNAIEPTGDAKSGRNARSGGQKHRQRSQDVR
Sbjct:    1 MQSWVHFAASAAAAATAGSAGHPPLLWQGEEERKPLQHWCDPELSYAVYMDICNGDMFVNAHGACFALADGDWCWVARAHKRSAFTAAAARAASGARTPEGDESPEIAALTAILCVNAGIDVVPELMASAAEQTRAWLDGSRTADEADLPLQVKVAFCDGPSIIYYSIHNAIEPTGDAKSGRNARSGGQKHRQRSQDVR 199
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|169207 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YQH5_9STRA4.120e-141100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_62contigContig_62:423094..423693 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|169207|e_gw1.62.2.1
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptiontRNA-splicing endonuclease subunit Sen15
Ec32 orthologEc-21_006500.1
TranscriptId169529
TrackFilteredModels1
ProteinId169207
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|169207gene_6520Tribonema minus UTEX_B_3156 geneContig_62 423094..423693 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6520_1exon_6520_1Tribonema minus UTEX_B_3156 exonContig_62 423094..423693 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6520CDS_6520Tribonema minus UTEX_B_3156 CDSContig_62 423094..423693 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|169207Trimin1|169207|e_gw1.62.2.1Tribonema minus UTEX_B_3156 polypeptideContig_62 423094..423693 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6520 ID=mRNA_6520|Name=jgi.p|Trimin1|169207|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=600bp|location=Sequence derived from alignment at Contig_62:423094..423693- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGAGCTGGGTACACTTTGCGGCGTCAGCAGCAGCGGCAGCAACAGC
GGGATCAGCGGGTCACCCACCATTGCTCTGGCAGGGCGAGGAGGAGAGGA
AGCCCTTGCAGCACTGGTGTGATCCTGAACTGTCCTATGCCGTTTACATG
GACATATGCAATGGAGACATGTTCGTAAATGCGCATGGAGCGTGCTTTGC
CCTTGCAGACGGTGATTGGTGCTGGGTGGCGAGAGCACACAAGCGCTCAG
CATTTACTGCAGCAGCGGCAAGGGCGGCGAGCGGGGCACGAACACCCGAA
GGCGATGAATCCCCAGAAATCGCTGCCCTGACTGCCATTTTATGCGTCAA
CGCTGGCATCGACGTAGTGCCTGAGCTGATGGCCAGCGCTGCAGAGCAGA
CGCGGGCGTGGCTGGACGGCTCTCGCACTGCAGATGAAGCTGACCTGCCG
CTGCAGGTGAAGGTGGCGTTTTGCGATGGGCCAAGCATCATTTACTACAG
CATTCATAACGCCATAGAGCCCACTGGCGACGCCAAGAGTGGTCGCAATG
CGCGCTCAGGCGGGCAAAAGCACAGGCAGCGCAGTCAGGACGTCAGATAG
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protein sequence of jgi.p|Trimin1|169207

>Trimin1|169207|e_gw1.62.2.1 ID=Trimin1|169207|e_gw1.62.2.1|Name=jgi.p|Trimin1|169207|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=200bp
MQSWVHFAASAAAAATAGSAGHPPLLWQGEEERKPLQHWCDPELSYAVYM
DICNGDMFVNAHGACFALADGDWCWVARAHKRSAFTAAAARAASGARTPE
GDESPEIAALTAILCVNAGIDVVPELMASAAEQTRAWLDGSRTADEADLP
LQVKVAFCDGPSIIYYSIHNAIEPTGDAKSGRNARSGGQKHRQRSQDVR*
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mRNA from alignment at Contig_62:423094..423693-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6520 ID=mRNA_6520|Name=jgi.p|Trimin1|169207|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=600bp|location=Sequence derived from alignment at Contig_62:423094..423693- (Tribonema minus UTEX_B_3156 )
ATGCAGAGCTGGGTACACTTTGCGGCGTCAGCAGCAGCGGCAGCAACAGC
GGGATCAGCGGGTCACCCACCATTGCTCTGGCAGGGCGAGGAGGAGAGGA
AGCCCTTGCAGCACTGGTGTGATCCTGAACTGTCCTATGCCGTTTACATG
GACATATGCAATGGAGACATGTTCGTAAATGCGCATGGAGCGTGCTTTGC
CCTTGCAGACGGTGATTGGTGCTGGGTGGCGAGAGCACACAAGCGCTCAG
CATTTACTGCAGCAGCGGCAAGGGCGGCGAGCGGGGCACGAACACCCGAA
GGCGATGAATCCCCAGAAATCGCTGCCCTGACTGCCATTTTATGCGTCAA
CGCTGGCATCGACGTAGTGCCTGAGCTGATGGCCAGCGCTGCAGAGCAGA
CGCGGGCGTGGCTGGACGGCTCTCGCACTGCAGATGAAGCTGACCTGCCG
CTGCAGGTGAAGGTGGCGTTTTGCGATGGGCCAAGCATCATTTACTACAG
CATTCATAACGCCATAGAGCCCACTGGCGACGCCAAGAGTGGTCGCAATG
CGCGCTCAGGCGGGCAAAAGCACAGGCAGCGCAGTCAGGACGTCAGATAG
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Coding sequence (CDS) from alignment at Contig_62:423094..423693-

>mRNA_6520 ID=mRNA_6520|Name=jgi.p|Trimin1|169207|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=600bp|location=Sequence derived from alignment at Contig_62:423094..423693- (Tribonema minus UTEX_B_3156 )
ATGCAGAGCTGGGTACACTTTGCGGCGTCAGCAGCAGCGGCAGCAACAGC
GGGATCAGCGGGTCACCCACCATTGCTCTGGCAGGGCGAGGAGGAGAGGA
AGCCCTTGCAGCACTGGTGTGATCCTGAACTGTCCTATGCCGTTTACATG
GACATATGCAATGGAGACATGTTCGTAAATGCGCATGGAGCGTGCTTTGC
CCTTGCAGACGGTGATTGGTGCTGGGTGGCGAGAGCACACAAGCGCTCAG
CATTTACTGCAGCAGCGGCAAGGGCGGCGAGCGGGGCACGAACACCCGAA
GGCGATGAATCCCCAGAAATCGCTGCCCTGACTGCCATTTTATGCGTCAA
CGCTGGCATCGACGTAGTGCCTGAGCTGATGGCCAGCGCTGCAGAGCAGA
CGCGGGCGTGGCTGGACGGCTCTCGCACTGCAGATGAAGCTGACCTGCCG
CTGCAGGTGAAGGTGGCGTTTTGCGATGGGCCAAGCATCATTTACTACAG
CATTCATAACGCCATAGAGCCCACTGGCGACGCCAAGAGTGGTCGCAATG
CGCGCTCAGGCGGGCAAAAGCACAGGCAGCGCAGTCAGGACGTCAGATAG
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