mRNA_6511 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|169114
Unique NamemRNA_6511
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|169114 vs. uniprot
Match: A0A835YN18_9STRA (FYVE-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN18_9STRA)

HSP 1 Score: 193 bits (490), Expect = 1.150e-62
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 1 
Query:    1 MSNSSKWVLDTNLRECAVCLREFGTNKPAASNKTHCRYCGGVYCRACCYECLSVPAEDVVQAPQEGPGFDPAAPQRVCVRCAEVSLHQ 264
            MSNSSKWVLDTNLRECAVCLREFGTNKPAASNKTHCRYCGGVYCRACCYECLSVPAEDVVQAPQEGPGFDPAAPQRVCVRCAEVSLHQ
Sbjct:    1 MSNSSKWVLDTNLRECAVCLREFGTNKPAASNKTHCRYCGGVYCRACCYECLSVPAEDVVQAPQEGPGFDPAAPQRVCVRCAEVSLHQ 88
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BLAST of jgi.p|Trimin1|169114 vs. uniprot
Match: D7G093_ECTSI (FYVE-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G093_ECTSI)

HSP 1 Score: 69.7 bits (169), Expect = 5.340e-13
Identity = 34/93 (36.56%), Postives = 50/93 (53.76%), Query Frame = 1 
Query:    4 SNSSKWVLDTNLRECAVCLREFGTN--KPAASNKTHCRYCGGVYCRACCYECLSVPAEDVVQAPQEGPG----FDPAAPQRVCVRCAEVSLHQ 264
            S S +WV D+ + +C +C   F  N     A  +THCRYCGGV+C  CC + L +P ++VV+ P         FDP   Q+ C  C ++ + Q
Sbjct:    9 SASKRWVDDSEVPQCPLCSNRFEGNFLDITARGRTHCRYCGGVFCTNCCSQELYMPEDEVVRPPPSNKFKSIIFDPTLKQKACRTCVKILIPQ 101
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|169114 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835YN18_9STRA1.150e-62100.00FYVE-type domain-containing protein n=1 Tax=Tribon... [more]
D7G093_ECTSI5.340e-1336.56FYVE-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_62contigContig_62:385104..385370 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|169114|e_gw1.62.217.1
BRITEko00000,ko04131
KEGG koko:K20523
GOsGO:0001726,GO:0003674,GO:0003779,GO:0005488,GO:0005515,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005886,GO:0005938,GO:0006810,GO:0006897,GO:0006996,GO:0007010,GO:0007015,GO:0008092,GO:0008150,GO:0008289,GO:0009987,GO:0015629,GO:0016020,GO:0016043,GO:0016192,GO:0022607,GO:0030029,GO:0030036,GO:0030479,GO:0030863,GO:0030864,GO:0031252,GO:0031253,GO:0031256,GO:0031344,GO:0032587,GO:0035091,GO:0042995,GO:0043167,GO:0043168,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044087,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044459,GO:0044463,GO:0044464,GO:0044877,GO:0050789,GO:0050794,GO:0051015,GO:0051017,GO:0051128,GO:0051179,GO:0051234,GO:0051641,GO:0051666,GO:0060491,GO:0061572,GO:0061645,GO:0065007,GO:0071840,GO:0071944,GO:0097435,GO:0098590,GO:0098657,GO:0099568,GO:0120025,GO:0120032,GO:0120035,GO:0120038,GO:1900027
Descriptionzinc finger family protein
COG categoryS
Max annot lvl33090|Viridiplantae
EggNOG OGsCOG2930@1|root,KOG1843@2759|Eukaryota,37KIV@33090|Viridiplantae
Evalue6.18e-07
Seed ortholog248742.XP_005642932.1
Hectar predicted targeting categoryother localisation
TranscriptId169436
TrackFilteredModels1
ProteinId169114
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|169114gene_6511Tribonema minus UTEX_B_3156 geneContig_62 385104..385370 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6511_1exon_6511_1Tribonema minus UTEX_B_3156 exonContig_62 385104..385370 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6511CDS_6511Tribonema minus UTEX_B_3156 CDSContig_62 385104..385370 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|169114Trimin1|169114|e_gw1.62.217.1Tribonema minus UTEX_B_3156 polypeptideContig_62 385104..385370 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6511 ID=mRNA_6511|Name=jgi.p|Trimin1|169114|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=267bp|location=Sequence derived from alignment at Contig_62:385104..385370- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCAATAGCAGCAAGTGGGTGCTGGACACCAATCTGAGGGAGTGCGC
TGTTTGCTTACGCGAGTTCGGCACCAACAAACCCGCGGCATCCAATAAGA
CTCACTGCCGATACTGCGGAGGCGTCTACTGCAGAGCGTGCTGCTACGAA
TGCCTCAGTGTGCCTGCAGAGGATGTGGTCCAAGCGCCGCAGGAGGGGCC
TGGTTTTGATCCCGCAGCTCCGCAGCGAGTCTGCGTGAGATGTGCGGAGG
TGAGTCTACATCAGTGA
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protein sequence of jgi.p|Trimin1|169114

>Trimin1|169114|e_gw1.62.217.1 ID=Trimin1|169114|e_gw1.62.217.1|Name=jgi.p|Trimin1|169114|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=89bp
MSNSSKWVLDTNLRECAVCLREFGTNKPAASNKTHCRYCGGVYCRACCYE
CLSVPAEDVVQAPQEGPGFDPAAPQRVCVRCAEVSLHQ*
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mRNA from alignment at Contig_62:385104..385370-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6511 ID=mRNA_6511|Name=jgi.p|Trimin1|169114|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=267bp|location=Sequence derived from alignment at Contig_62:385104..385370- (Tribonema minus UTEX_B_3156 )
ATGAGCAATAGCAGCAAGTGGGTGCTGGACACCAATCTGAGGGAGTGCGC
TGTTTGCTTACGCGAGTTCGGCACCAACAAACCCGCGGCATCCAATAAGA
CTCACTGCCGATACTGCGGAGGCGTCTACTGCAGAGCGTGCTGCTACGAA
TGCCTCAGTGTGCCTGCAGAGGATGTGGTCCAAGCGCCGCAGGAGGGGCC
TGGTTTTGATCCCGCAGCTCCGCAGCGAGTCTGCGTGAGATGTGCGGAGG
TGAGTCTACATCAGTGA
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Coding sequence (CDS) from alignment at Contig_62:385104..385370-

>mRNA_6511 ID=mRNA_6511|Name=jgi.p|Trimin1|169114|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=267bp|location=Sequence derived from alignment at Contig_62:385104..385370- (Tribonema minus UTEX_B_3156 )
ATGAGCAATAGCAGCAAGTGGGTGCTGGACACCAATCTGAGGGAGTGCGC
TGTTTGCTTACGCGAGTTCGGCACCAACAAACCCGCGGCATCCAATAAGA
CTCACTGCCGATACTGCGGAGGCGTCTACTGCAGAGCGTGCTGCTACGAA
TGCCTCAGTGTGCCTGCAGAGGATGTGGTCCAAGCGCCGCAGGAGGGGCC
TGGTTTTGATCCCGCAGCTCCGCAGCGAGTCTGCGTGAGATGTGCGGAGG
TGAGTCTACATCAGTGA
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