mRNA_6488 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|155455
Unique NamemRNA_6488
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|155455 vs. uniprot
Match: A0A835YQF6_9STRA (PLC-like phosphodiesterase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQF6_9STRA)

HSP 1 Score: 681 bits (1757), Expect = 3.150e-247
Identity = 349/349 (100.00%), Postives = 349/349 (100.00%), Query Frame = 1
Query:    1 LHADLQGACLLYLDTRSLLRWAAVSRGSFSTGSSSNRNFNGIFASQGHAQRHIQRLLLELHHSKDHLHHVSQLAGHSIKPAPPAWATAAGATATPPKRVLNIGHKGAEGHVKGNTLDSFHRAVELGVDMIEFDVVACADGILCHHDPLHEASGKWYQDMTIAKVRSLLGRPHPTLDEMLADRRLRDSGVHLYFDLKHTNIVRPTMRSIVAAVTRGGWHASRFVVATFKQVELLEINAFRQAIPELRGLRTAAILDAIPLSLARDFEALGCCAVSVGQYCVCPEFVADCHRRGLEMWAWTVNHKSMVDELFRLGIDGICTDYPELVHAAAAXXXXXXXXXXXXTPPHPAG 1047
            LHADLQGACLLYLDTRSLLRWAAVSRGSFSTGSSSNRNFNGIFASQGHAQRHIQRLLLELHHSKDHLHHVSQLAGHSIKPAPPAWATAAGATATPPKRVLNIGHKGAEGHVKGNTLDSFHRAVELGVDMIEFDVVACADGILCHHDPLHEASGKWYQDMTIAKVRSLLGRPHPTLDEMLADRRLRDSGVHLYFDLKHTNIVRPTMRSIVAAVTRGGWHASRFVVATFKQVELLEINAFRQAIPELRGLRTAAILDAIPLSLARDFEALGCCAVSVGQYCVCPEFVADCHRRGLEMWAWTVNHKSMVDELFRLGIDGICTDYPELVHAAAAXXXXXXXXXXXXTPPHPAG
Sbjct:    1 LHADLQGACLLYLDTRSLLRWAAVSRGSFSTGSSSNRNFNGIFASQGHAQRHIQRLLLELHHSKDHLHHVSQLAGHSIKPAPPAWATAAGATATPPKRVLNIGHKGAEGHVKGNTLDSFHRAVELGVDMIEFDVVACADGILCHHDPLHEASGKWYQDMTIAKVRSLLGRPHPTLDEMLADRRLRDSGVHLYFDLKHTNIVRPTMRSIVAAVTRGGWHASRFVVATFKQVELLEINAFRQAIPELRGLRTAAILDAIPLSLARDFEALGCCAVSVGQYCVCPEFVADCHRRGLEMWAWTVNHKSMVDELFRLGIDGICTDYPELVHAAAAXXXXXXXXXXXXTPPHPAG 349          
BLAST of jgi.p|Trimin1|155455 vs. uniprot
Match: A0A6H5KRG7_9PHAE (GP-PDE domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KRG7_9PHAE)

HSP 1 Score: 284 bits (727), Expect = 1.160e-87
Identity = 155/354 (43.79%), Postives = 220/354 (62.15%), Query Frame = 1
Query:    1 LHADLQGACLLYLDTRSLLRWAAVSRGSFSTGSSSNRNFNGIFASQGHAQRHIQRLLLELHHSKDHLHHVSQLAGHSIKPAPPAWATAAGAT----ATPPKRVLNIGHKGAEGHVKGNTLDSFHRAVELGVDMIEFDVVACADGI-LCHHDPLHEASGKWYQDMTIAKVRSLLGRPHPTLDEMLADRRLRDSGVHLYFDLKHTNIVRPTMRSIVAAVTRGGWHASRFVVATFKQVELLEINAFRQAIPELRGLRTAAILDAIPLSLARDFEALGCCAVSVGQYCVCPEFVADCHRRGLEMWAWTVNHKSMVDELFRLGIDGICTDYPELVHAAAAXXXXXXXXXXXXTPPHPAG 1047
            L  +L  + L++L  + +L+W  VS  +             ++AS+    R  +R+ ++LH +   L  +S LA     P+P    T   A     ++   + LNIGHKGA GHV+GNT+ SF  AV LGVD+IEFDV+  +DG+ +CHHDPL E SG+W +++T+A+ R  L     T +EML ++ L +SGVHLY D+KHT IVRP + +++ AV R GW A R VVATF+Q++LL++NA+RQAIPEL  LRTA I+D  PL+LARDF+AL    +S G+  V P+ VADC RRG+++W WTVN    ++ L ++G+DG+CTDYP LVH +              T P P G
Sbjct:   31 LPEELMSSVLVFLRMKDMLQWRVVSSST-----------KAMWASESQVSRVARRVSVDLHLTLSKLKAISLLA-----PSPRLDGTQPVANRDVHSSKWGKALNIGHKGAAGHVEGNTMPSFLEAVRLGVDVIEFDVLTTSDGVVICHHDPLIEESGEWIENLTLAQTRERLKHNVSTFEEMLQEKVLSESGVHLYIDMKHTEIVRPVLHAVMQAVDRWGWTADRLVVATFRQLDLLQVNAYRQAIPELANLRTACIMDGGPLTLARDFKALKVDILSTGKDHVSPDLVADCQRRGIQVWVWTVNSLHFMERLLKMGVDGLCTDYPGLVHESNRRLRPQASQTDAATFPFPQG 368          
BLAST of jgi.p|Trimin1|155455 vs. uniprot
Match: A0A4D9D615_9STRA (GP-PDE domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D615_9STRA)

HSP 1 Score: 186 bits (472), Expect = 6.750e-50
Identity = 102/235 (43.40%), Postives = 147/235 (62.55%), Query Frame = 1
Query:  280 TPPK---RVLNIGHKGAEGHVKGNTLDSFHRAVELGVDMIEFDVVACADG-ILCHHDPLHEASGKWYQDMTIAKVRSLLGRPHPTLDEMLADRRLRDSGVHLYFDLKHTNIVRPTMRSIVAAVTRGGWHASRFVVATFKQVELLEINAFRQAIPE-LRGLRTAAILDAIPLSLARDFEALGCCAVSVGQYCVCPEFVADCHRRGLEMWAWTVNHKSMVDELFRLGIDGICTDYPE 969
            TPP+   R L++GH+GA GHVKGN+L SF RAV LG DMIE DV     G ++ HHD  +   G+  +++ +A+++ +     P L  +LAD  LR SGV LY D+K   +V P MR +  A+ + GW  SR +VA+F Q +++E+NA R A P  L  L+T  I+D +P+S A+++ ALG    S+G  CV P F+ D HRRG+ +  WTVN+ S +     LG+D + TD+PE
Sbjct:  142 TPPRLVPRPLSVGHRGASGHVKGNSLASFQRAVALGADMIELDVCLDRSGEVIVHHDR-YLPDGRLLENLALAQIKRVDPAVEP-LSRVLAD--LRASGVSLYLDIKTDRVVAPLMRLLHEAIAQKGWAPSRLLVASFNQYDMIEVNAHRLAYPATLAALQTCIIVDGVPISFAKEYAALGVHWCSIGDGCVLPSFLEDAHRRGIGVMVWTVNNASAMRRYADLGVDALVTDFPE 372          
BLAST of jgi.p|Trimin1|155455 vs. uniprot
Match: A0A6V1WIB7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1WIB7_HETAK)

HSP 1 Score: 157 bits (396), Expect = 3.480e-40
Identity = 98/287 (34.15%), Postives = 151/287 (52.61%), Query Frame = 1
Query:  109 RNFNGIFASQGHAQRHIQRLLLELHHSKDHLHHVSQLAGHSIKPAPPAWATAAGATATPPKRVLNIGHKGAEGHVKGNTLDSFHRAVELGVDMIEFDVVACAD-GILCHHDPLHEASGKWYQDMTIAKVRSLLGRPHPTLDEMLADRRLRDSGVHLYFDLKHTNIVRPTMRSIVAAVTRGGWHASRFVVATFKQVELLEINAFRQAIPELRGLRTAAILDAIPLSLARDFEALGCCAVSVGQYCVCPEFVADCHRRGLEMWAWTVNHKSMVDELFRLGIDGICTDYP 966
            R    +FAS+ HA+  +Q++  EL  +   +    +L   + + +        G       + + I HKG      GNT+ +F  +V +G +MIE D++   D  I+ HHD           +  ++++R       PTL E L +  LR S + +YFDLK  +IV P +  ++ AV R  W ASRF++A+F Q +LL++NAF+ A       +T  I+DA+PL  A  FE L    +S+ Q  + P FV D HRRG+ ++AWTVN   +     R+G+DGICTD P
Sbjct:   33 RRLTSLFASEHHAKSVLQKVECELGKATYKVRTEGRLHDSTYQSSLAKAKADKGTNVY--HKTITICHKGCSSKFHGNTMPAFKESVRIGAEMIELDLILTRDRNIIIHHDQTTPDGEGLCFETPMSEIRRKFPEI-PTLREFLENDMLRKSDIRIYFDLKCQDIVEPLLELLMEAVHRLQWEASRFLIASFDQYDLLDVNAFKSAHDV--DFQTIVIVDAMPLGYAACFEELEVAYISIAQGRLIPAFVQDAHRRGMGVFAWTVNDPVLWRAFVRMGVDGICTDRP 314          
BLAST of jgi.p|Trimin1|155455 vs. uniprot
Match: A0A3R6ZVH9_9BACT (Glycerophosphodiester phosphodiesterase n=1 Tax=Candidatus Parcubacteria bacterium TaxID=2762014 RepID=A0A3R6ZVH9_9BACT)

HSP 1 Score: 123 bits (309), Expect = 6.580e-30
Identity = 78/234 (33.33%), Postives = 128/234 (54.70%), Query Frame = 1
Query:  295 VLNIGHKGAEGHVKGNTLDSFHRAVELGVDMIEFDVVACADG--ILCHHDPLHEAS-GKWYQ-DMTIAKVRSLL---GRPHPTLDEMLADRRLRDSGVHLYFDLKHTNIVRPTMRSIVAAVTRGGWHASRFVVATFKQVELLEINAFRQAIPELRGLRTAAILDAIPLSLARDFEALGCCAVSVGQYCVCPEFVADCHRRGLEMWAWTVNHKSMVDELFRLGIDGICTDYPELV 975
            +L IGH+GA G+   NTL SF +A+ELGVDMIE DV  C  G  ++ H D +   + G  Y  D T  ++RSLL   G   PTL E+     L D  V +  +LK  +   P  + I   +    W A  F+V++F   EL     F++ +PE+R     A++  IP+  ++  E +   +V +       +++AD H+RG +++ +TVN K  ++++  LG+DG+ ++YP+ +
Sbjct:    1 MLKIGHRGAMGYEPENTLRSFAKALELGVDMIELDVYVCQSGELVVIHDDKVDRTTNGHGYVVDKTFTEIRSLLIAQGEKIPTLSEVFD---LVDKKVPINVELKGEHTAEPVAQLIGQYIKEKDWTAEHFLVSSFDHYEL---KRFKELMPEIR---VGALIAGIPIGYSKFAEEVSAYSVHLSLDFARQKYIADAHQRGFKVFVYTVNDKDDINKMKELGVDGLFSNYPDRI 225          
BLAST of jgi.p|Trimin1|155455 vs. uniprot
Match: A0A1F8DZ09_9BACT (GP-PDE domain-containing protein n=1 Tax=Candidatus Wolfebacteria bacterium RIFOXYD1_FULL_48_65 TaxID=1802561 RepID=A0A1F8DZ09_9BACT)

HSP 1 Score: 120 bits (302), Expect = 7.040e-29
Identity = 83/236 (35.17%), Postives = 124/236 (52.54%), Query Frame = 1
Query:  295 VLNIGHKGAEGHVKGNTLDSFHRAVELGVDMIEFDVVACADG-ILCHHDPLHEASGKWY---QDMTIAKVRSLL---GRPHPTLDEML--ADRRLRDSGVHLYFDLKHTNIVRPTMRSIVAAVTRGGWHASRFVVATFKQVELLEINAFRQAIPELRGLRTAAILDAIPLSLARDFEALGCCAVSVGQYCVCPEFVADCHRRGLEMWAWTVNHKSMVDELFRLGIDGICTDYPELV 975
            VL +GH+GA G+   NT+ SF +A+EL V MIE DV  C  G ++  HD   +     +    D+T+ ++R L    G   PTL E     DR+ R     +  +LKH  +V PT   + + +   GW A  F+   F    L     FR+ +P   G+  AAIL  +P+  A   E LG  +V++    +  EFV D HRRGL+++AWTVN    +  +  LG+DGI +++P+ V
Sbjct:    2 VLRLGHRGACGYAPENTVASFVKAIELNVAMIELDVRLCKSGEVMVLHDEKVDRMTNGHGAVSDLTLEELRQLDIKDGGKIPTLAEAFDAIDRKAR-----VVIELKHAEVVEPTAALVRSYIAERGWGADDFLPTAFDHYFLAR---FRELVP---GIGLAAILAGVPIGYAEFGERLGAYSVNMAFPFLNKEFVEDAHRRGLKVFAWTVNEPEDIAWVKALGVDGIFSNFPDRV 226          
BLAST of jgi.p|Trimin1|155455 vs. uniprot
Match: A0A550GQM5_9ARCH (Glycerophosphodiester phosphodiesterase n=1 Tax=Candidatus Bathyarchaeota archaeon TaxID=2026714 RepID=A0A550GQM5_9ARCH)

HSP 1 Score: 120 bits (300), Expect = 1.310e-28
Identity = 78/235 (33.19%), Postives = 128/235 (54.47%), Query Frame = 1
Query:  295 VLNIGHKGAEGHVKGNTLDSFHRAVELGVDMIEFDVVACADG--ILCHH---DPLHEASGKWYQDMTIAKVRSL---LGRPHPTLDEMLADRRLRDSGVHLYFDLKHTNIVRPTMRSIVAAVTRGGWHASRFVVATFKQVELLEINAFRQAIPELRGLRTAAILDAIPLSLARDFEALGCCAVSVGQYCVCPEFVADCHRRGLEMWAWTVNHKSMVDELFRLGIDGICTDYPELV 975
            V+ +GH+GA GH   NTL SF RA+ELG DM+E DV  C  G  ++ H    D   + +G+    MT+ ++R+L   +G   PTL E++    L    + +  +LK      P +R I AA+  G W  + F  ++F+   L E+ A R+   E+R      +L A+   +    E +G  +++     + P+ V++ HRRGL+++AWTVN  + +  +  LG+DGI +DYP+ +
Sbjct:    2 VVKVGHRGAAGHEPENTLRSFRRAMELGADMVELDVQLCGSGELVVIHDGTVDRTTDGTGE-VAGMTLGELRALDAGMGERIPTLREVID---LAAGRIGINIELKGPGTAEPALRHIEAALDEG-WEIADFHASSFR---LEELTAIREFSGEVR----TGVLYALDSGVMEYAERIGAYSLNPHHRAINPDLVSEAHRRGLKVYAWTVNDPADIARMKGLGVDGIISDYPDRI 224          
BLAST of jgi.p|Trimin1|155455 vs. uniprot
Match: K2G5L1_9BACT (GP-PDE domain-containing protein n=1 Tax=uncultured bacterium TaxID=77133 RepID=K2G5L1_9BACT)

HSP 1 Score: 115 bits (289), Expect = 5.400e-27
Identity = 75/232 (32.33%), Postives = 124/232 (53.45%), Query Frame = 1
Query:  295 VLNIGHKGAEGHVKGNTLDSFHRAVELGVDMIEFDVVACADG--ILCHHDPLHEAS-GKWYQ-DMTIAKVRSL---LGRPHPTLDEMLADRRLRDSGVHLYFDLKHTNIVRPTMRSIVAAVTRGGWHASRFVVATFKQVELLEINAFRQAIPELRGLRTAAILDAIPLSLARDFEALGCCAVSVGQYCVCPEFVADCHRRGLEMWAWTVNHKSMVDELFRLGIDGICTDYPE 969
            +  IGH+GA G+   NTL+SF +A++LGVDM+E DV    DG  ++ H D +   + GK Y  + T +++R+L    G+  PTL E+     L D    +  +LK +N  +     I   V   GW    F+V++F   EL     F + IPE+R     A++  IP+  A   E +   +V++    +  E V D H RG++++ WT N    ++++  LG+DGI +++P+
Sbjct:    2 ITKIGHRGAMGYAPENTLNSFAKALDLGVDMVELDVYISIDGELVVIHDDKVDRTTDGKGYVIEKTFSQLRNLDAGNGQKIPTLKEVFD---LVDRKAEINIELKGSNTAQSVSVLIEEYVKERGWKYEDFLVSSFNHYEL---KKFHELIPEIR---IGALITGIPVGFAEFAERVNAWSVNLCMEFINKEMVDDAHARGMKVFVWTANDSDDIEKMKLLGVDGIFSNFPD 224          
BLAST of jgi.p|Trimin1|155455 vs. uniprot
Match: A0A2H0YPY3_9BACT (Glycerophosphodiester phosphodiesterase n=1 Tax=Candidatus Kerfeldbacteria bacterium CG08_land_8_20_14_0_20_43_14 TaxID=2014246 RepID=A0A2H0YPY3_9BACT)

HSP 1 Score: 114 bits (285), Expect = 2.250e-26
Identity = 80/234 (34.19%), Postives = 126/234 (53.85%), Query Frame = 1
Query:  292 RVLNIGHKGAEGHVKGNTLDSFHRAVELGVDMIEFDVVACADG--ILCHHDPLHEAS-GKWY-QDMTIAKVRSL---LGRPHPTLDEMLADRRLRDSGVHLYFDLKHTNIVRPTMRSIVAAVTR--GGWHASRFVVATFKQVELLEINAFRQAIPELRGLRTAAILDAIPLSLARDFEALGCCAVSVGQYCVCPEFVADCHRRGLEMWAWTVNHKSMVDELFRLGIDGICTDYP 966
            + L IGH+GA GH   NTL S  +A+EL VDMIEFDV  C  G  ++ H D ++  + G  Y  +MT  ++R L    G   PTL E L    L +  V +  +LK      P  ++I    T+  G W    F+V++F   EL    AF+QA+P   G++  A++  +  + A+  + LG  +V+     +  EFV D HRRGL+++ +TVN    ++ +   G+DG+ +++P
Sbjct:    3 KFLKIGHRGACGHEPENTLRSIKKALELSVDMIEFDVYVCKSGGLVVIHDDTVNRTTNGTGYVTEMTFEELRKLDAGKGEKIPTLQEALD---LINGKVQVNIELKGVGTALPVAKTINEYTTKHPGVWTPEHFLVSSFNHFEL---RAFKQAMP---GIKIGALICGMLTTRAQFAQDLGAYSVNPSIEFLDQEFVDDAHRRGLKVFVYTVNLPEDIERMKAWGVDGVFSNFP 227          
BLAST of jgi.p|Trimin1|155455 vs. uniprot
Match: A0A256WA64_9BACT (Glycerophosphodiester phosphodiesterase n=1 Tax=Bacteroidetes bacterium 4572_112 TaxID=1971630 RepID=A0A256WA64_9BACT)

HSP 1 Score: 113 bits (283), Expect = 3.880e-26
Identity = 73/233 (31.33%), Postives = 128/233 (54.94%), Query Frame = 1
Query:  295 VLNIGHKGAEGHVKGNTLDSFHRAVELGVDMIEFDVVACADG-ILCHHDP----LHEASGKWYQDMTIAKVRSL---LGRPHPTLDEMLADRRLRDSGVHLYFDLKHTNIVRPTMRSIVAAVTRGGWHASRFVVATFKQVELLEINAFRQAIPELRGLRTAAILDAIPLSLARDFEALGCCAVSVGQYCVCPEFVADCHRRGLEMWAWTVNHKSMVDELFRLGIDGICTDYPE 969
            ++ IGH+GA+G++  NTL+SF +A+ELGVD IE DV  C  G ++  HD     L    G+  +D+    ++ L    G   PTL+++L    L D+ V +  +LK  N  +   + I   + +  W  + F++++F  +ELL+   F++  PE+      A+  +IP + A   E LG  ++++        +V D H+RGL+++ +TVNH   +     +G+DGI +D+P+
Sbjct:    1 MIKIGHRGAKGYIAENTLESFAKAMELGVDAIELDVQVCKSGELVVFHDHRVERLTNGIGR-IEDLEYKYLKKLDAGNGAIIPTLEQVLD---LIDNKVIVNIELKSKNSAKEVAKLIELYINKHNWKKTNFLISSFDHIELLQ---FKKLSPEIN---IGALTASIPTNYALFAENLGAYSINISLEFTNQAYVDDAHKRGLKVFVYTVNHPKDIAYCKAIGVDGIFSDFPD 223          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|155455 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YQF6_9STRA3.150e-247100.00PLC-like phosphodiesterase (Fragment) n=1 Tax=Trib... [more]
A0A6H5KRG7_9PHAE1.160e-8743.79GP-PDE domain-containing protein n=2 Tax=Ectocarpu... [more]
A0A4D9D615_9STRA6.750e-5043.40GP-PDE domain-containing protein n=1 Tax=Nannochlo... [more]
A0A6V1WIB7_HETAK3.480e-4034.15Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A3R6ZVH9_9BACT6.580e-3033.33Glycerophosphodiester phosphodiesterase n=1 Tax=Ca... [more]
A0A1F8DZ09_9BACT7.040e-2935.17GP-PDE domain-containing protein n=1 Tax=Candidatu... [more]
A0A550GQM5_9ARCH1.310e-2833.19Glycerophosphodiester phosphodiesterase n=1 Tax=Ca... [more]
K2G5L1_9BACT5.400e-2732.33GP-PDE domain-containing protein n=1 Tax=unculture... [more]
A0A2H0YPY3_9BACT2.250e-2634.19Glycerophosphodiester phosphodiesterase n=1 Tax=Ca... [more]
A0A256WA64_9BACT3.880e-2631.33Glycerophosphodiester phosphodiesterase n=1 Tax=Ba... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_62contigContig_62:229907..230953 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|155455|gw1.62.208.1
BRITEko00000,ko00001,ko01000
KEGG rclassRC00017,RC00425
KEGG ReactionR01030,R01470
KEGG Pathwayko00564,map00564
KEGG koko:K01126
EC3.1.4.46
Descriptionglycerophosphoryl diester phosphodiesterase
COG categoryC
Max annot lvl976|Bacteroidetes
EggNOG OGsCOG0584@1|root,COG0584@2|Bacteria,4NGNU@976|Bacteroidetes,1HYHS@117743|Flavobacteriia
Evalue1.21e-23
Seed ortholog487796.Flav2ADRAFT_0413
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionglcerophosphoryl diester phosphodiesterase
Ec32 orthologEc-23_002410.1
TranscriptId155777
TrackFilteredModels1
ProteinId155455
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|155455gene_6488Tribonema minus UTEX_B_3156 geneContig_62 229907..230953 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6488_1exon_6488_1Tribonema minus UTEX_B_3156 exonContig_62 229907..230953 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6488CDS_6488Tribonema minus UTEX_B_3156 CDSContig_62 229907..230953 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|155455Trimin1|155455|gw1.62.208.1Tribonema minus UTEX_B_3156 polypeptideContig_62 229907..230953 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6488 ID=mRNA_6488|Name=jgi.p|Trimin1|155455|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1047bp|location=Sequence derived from alignment at Contig_62:229907..230953+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CTCCATGCCGACCTCCAGGGCGCCTGCCTCCTCTACCTGGACACTCGGTC
GCTGTTGCGCTGGGCAGCGGTGTCGAGAGGCAGCTTCTCCACCGGTAGCA
GCTCCAACAGGAATTTCAATGGCATCTTCGCTTCGCAGGGACACGCGCAG
AGGCACATACAGAGGCTCCTGCTTGAGCTCCACCACAGCAAGGACCACCT
GCACCATGTCTCTCAGCTGGCGGGACACTCCATCAAGCCCGCCCCACCCG
CGTGGGCCACTGCGGCGGGTGCCACTGCTACCCCTCCGAAGCGAGTCCTT
AACATCGGGCACAAGGGCGCCGAAGGCCACGTAAAGGGCAACACCCTGGA
CTCCTTCCACCGCGCAGTGGAGCTGGGGGTCGACATGATCGAGTTCGACG
TCGTGGCCTGCGCCGATGGCATCCTGTGCCACCACGATCCCCTTCACGAA
GCGTCGGGCAAGTGGTACCAGGACATGACCATAGCTAAGGTGCGTTCTCT
CCTGGGTCGCCCTCACCCCACGCTGGACGAGATGCTGGCGGACAGGAGGC
TGCGGGACAGCGGCGTTCACCTCTACTTCGACCTCAAGCACACCAACATT
GTCCGCCCCACCATGCGCTCCATAGTGGCGGCCGTTACGCGTGGCGGCTG
GCACGCATCCCGCTTCGTGGTGGCCACCTTCAAGCAGGTGGAGCTCCTGG
AGATCAACGCCTTCAGGCAGGCGATCCCAGAGCTCCGCGGCCTGCGCACG
GCGGCCATCCTCGACGCGATCCCTCTGTCCCTCGCCCGCGACTTCGAGGC
ACTGGGCTGCTGCGCCGTCAGCGTTGGCCAGTACTGCGTGTGCCCGGAGT
TCGTCGCCGACTGCCACCGCCGCGGCCTCGAGATGTGGGCCTGGACCGTC
AACCACAAGTCCATGGTCGACGAGCTCTTCCGCCTCGGCATCGACGGCAT
CTGCACGGACTACCCGGAGCTGGTGCACGCCGCTGCCGCCGCGCGCGCCG
CCGCCATCCCCGCCGCCGCCGCCGCCACGCCGCCGCACCCCGCCGGC
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protein sequence of jgi.p|Trimin1|155455

>Trimin1|155455|gw1.62.208.1 ID=Trimin1|155455|gw1.62.208.1|Name=jgi.p|Trimin1|155455|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=349bp
LHADLQGACLLYLDTRSLLRWAAVSRGSFSTGSSSNRNFNGIFASQGHAQ
RHIQRLLLELHHSKDHLHHVSQLAGHSIKPAPPAWATAAGATATPPKRVL
NIGHKGAEGHVKGNTLDSFHRAVELGVDMIEFDVVACADGILCHHDPLHE
ASGKWYQDMTIAKVRSLLGRPHPTLDEMLADRRLRDSGVHLYFDLKHTNI
VRPTMRSIVAAVTRGGWHASRFVVATFKQVELLEINAFRQAIPELRGLRT
AAILDAIPLSLARDFEALGCCAVSVGQYCVCPEFVADCHRRGLEMWAWTV
NHKSMVDELFRLGIDGICTDYPELVHAAAAARAAAIPAAAAATPPHPAG
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mRNA from alignment at Contig_62:229907..230953+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6488 ID=mRNA_6488|Name=jgi.p|Trimin1|155455|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1047bp|location=Sequence derived from alignment at Contig_62:229907..230953+ (Tribonema minus UTEX_B_3156 )
CTCCATGCCGACCTCCAGGGCGCCTGCCTCCTCTACCTGGACACTCGGTC GCTGTTGCGCTGGGCAGCGGTGTCGAGAGGCAGCTTCTCCACCGGTAGCA GCTCCAACAGGAATTTCAATGGCATCTTCGCTTCGCAGGGACACGCGCAG AGGCACATACAGAGGCTCCTGCTTGAGCTCCACCACAGCAAGGACCACCT GCACCATGTCTCTCAGCTGGCGGGACACTCCATCAAGCCCGCCCCACCCG CGTGGGCCACTGCGGCGGGTGCCACTGCTACCCCTCCGAAGCGAGTCCTT AACATCGGGCACAAGGGCGCCGAAGGCCACGTAAAGGGCAACACCCTGGA CTCCTTCCACCGCGCAGTGGAGCTGGGGGTCGACATGATCGAGTTCGACG TCGTGGCCTGCGCCGATGGCATCCTGTGCCACCACGATCCCCTTCACGAA GCGTCGGGCAAGTGGTACCAGGACATGACCATAGCTAAGGTGCGTTCTCT CCTGGGTCGCCCTCACCCCACGCTGGACGAGATGCTGGCGGACAGGAGGC TGCGGGACAGCGGCGTTCACCTCTACTTCGACCTCAAGCACACCAACATT GTCCGCCCCACCATGCGCTCCATAGTGGCGGCCGTTACGCGTGGCGGCTG GCACGCATCCCGCTTCGTGGTGGCCACCTTCAAGCAGGTGGAGCTCCTGG AGATCAACGCCTTCAGGCAGGCGATCCCAGAGCTCCGCGGCCTGCGCACG GCGGCCATCCTCGACGCGATCCCTCTGTCCCTCGCCCGCGACTTCGAGGC ACTGGGCTGCTGCGCCGTCAGCGTTGGCCAGTACTGCGTGTGCCCGGAGT TCGTCGCCGACTGCCACCGCCGCGGCCTCGAGATGTGGGCCTGGACCGTC AACCACAAGTCCATGGTCGACGAGCTCTTCCGCCTCGGCATCGACGGCAT CTGCACGGACTACCCGGAGCTGGTGCACGCCGCTGCCGCCGCGCGCGCCG CCGCCATCCCCGCCGCCGCCGCCGCCACGCCGCCGCACCCCGCCGGC
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Coding sequence (CDS) from alignment at Contig_62:229907..230953+

>mRNA_6488 ID=mRNA_6488|Name=jgi.p|Trimin1|155455|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1047bp|location=Sequence derived from alignment at Contig_62:229907..230953+ (Tribonema minus UTEX_B_3156 )
CTCCATGCCGACCTCCAGGGCGCCTGCCTCCTCTACCTGGACACTCGGTC
GCTGTTGCGCTGGGCAGCGGTGTCGAGAGGCAGCTTCTCCACCGGTAGCA
GCTCCAACAGGAATTTCAATGGCATCTTCGCTTCGCAGGGACACGCGCAG
AGGCACATACAGAGGCTCCTGCTTGAGCTCCACCACAGCAAGGACCACCT
GCACCATGTCTCTCAGCTGGCGGGACACTCCATCAAGCCCGCCCCACCCG
CGTGGGCCACTGCGGCGGGTGCCACTGCTACCCCTCCGAAGCGAGTCCTT
AACATCGGGCACAAGGGCGCCGAAGGCCACGTAAAGGGCAACACCCTGGA
CTCCTTCCACCGCGCAGTGGAGCTGGGGGTCGACATGATCGAGTTCGACG
TCGTGGCCTGCGCCGATGGCATCCTGTGCCACCACGATCCCCTTCACGAA
GCGTCGGGCAAGTGGTACCAGGACATGACCATAGCTAAGGTGCGTTCTCT
CCTGGGTCGCCCTCACCCCACGCTGGACGAGATGCTGGCGGACAGGAGGC
TGCGGGACAGCGGCGTTCACCTCTACTTCGACCTCAAGCACACCAACATT
GTCCGCCCCACCATGCGCTCCATAGTGGCGGCCGTTACGCGTGGCGGCTG
GCACGCATCCCGCTTCGTGGTGGCCACCTTCAAGCAGGTGGAGCTCCTGG
AGATCAACGCCTTCAGGCAGGCGATCCCAGAGCTCCGCGGCCTGCGCACG
GCGGCCATCCTCGACGCGATCCCTCTGTCCCTCGCCCGCGACTTCGAGGC
ACTGGGCTGCTGCGCCGTCAGCGTTGGCCAGTACTGCGTGTGCCCGGAGT
TCGTCGCCGACTGCCACCGCCGCGGCCTCGAGATGTGGGCCTGGACCGTC
AACCACAAGTCCATGGTCGACGAGCTCTTCCGCCTCGGCATCGACGGCAT
CTGCACGGACTACCCGGAGCTGGTGCACGCCGCTGCCGCCGCGCGCGCCG
CCGCCATCCCCGCCGCCGCCGCCGCCACGCCGCCGCACCCCGCCGGC
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