mRNA_6422 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|162753
Unique NamemRNA_6422
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|162753 vs. uniprot
Match: A0A835Z1T8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1T8_9STRA)

HSP 1 Score: 110 bits (275), Expect = 4.480e-24
Identity = 338/338 (100.00%), Postives = 338/338 (100.00%), Query Frame = 1 
Query:    1 MLRAVLRATDSGPQRDALTLVKSVYHPTDAASLPACTVDLPALESLDLSHCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCNLMHLRMLTLEELPIETLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXITDTEALVALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQDVVTATAEALAAVNLAIEAVSNR 1014
            MLRAVLRATDSGPQRDALTLVKSVYHPTDAASLPACTVDLPALESLDLSHCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCNLMHLRMLTLEELPIETLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXITDTEALVALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQDVVTATAEALAAVNLAIEAVSNR
Sbjct:    1 MLRAVLRATDSGPQRDALTLVKSVYHPTDAASLPACTVDLPALESLDLSHCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCNLMHLRMLTLEELPIETLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXITDTEALVALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQDVVTATAEALAAVNLAIEAVSNR 338
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|162753 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835Z1T8_9STRA4.480e-24100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_22contigContig_22:973234..974250 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|162753|e_gw1.22.76.1
Hectar predicted targeting categoryother localisation
TranscriptId163075
TrackFilteredModels1
ProteinId162753
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|162753gene_6422Tribonema minus UTEX_B_3156 geneContig_22 973234..974250 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6422_1exon_6422_1Tribonema minus UTEX_B_3156 exonContig_22 973234..974250 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6422CDS_6422Tribonema minus UTEX_B_3156 CDSContig_22 973234..974250 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|162753Trimin1|162753|e_gw1.22.76.1Tribonema minus UTEX_B_3156 polypeptideContig_22 973234..974250 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6422 ID=mRNA_6422|Name=jgi.p|Trimin1|162753|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1017bp|location=Sequence derived from alignment at Contig_22:973234..974250+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCTACGTGCAGTCCTCCGCGCCACGGATTCAGGACCTCAGCGAGATGC
TCTGACGCTAGTAAAGTCAGTGTATCATCCTACTGACGCCGCAAGCCTGC
CAGCGTGCACCGTAGACCTGCCGGCATTAGAAAGCCTCGATCTGAGCCAC
TGCACAGAGCTAGAGACCTTGCCTTGCAGCATTGGCAATCTGACGATGTT
AACGTTGCTTGATTTGACCAATTGCAATAGCCTGATGCATCTGCCTGCGA
GCATCGGCAATCTGACTGCGTTGGAGAGTCTTTCACTCCGCGGCTGCGAT
AAGATCTCACGCCTGCCTGATACCATCGGCGCTCTGGCCTCGCTGGAAAC
GCTCACGGTGTCCTGCTGCAGTGACATGGCAATACTGCCGGCGTGCCTCG
GTGACCTTGCAGCTCTCACGTGGCTGTCGATAAGCATGTGCGGCACCTTA
ACGGCCCTGCCTGACTCCATCTGCAACCTGATGCACTTGAGGATGCTCAC
GCTAGAGGAGCTGCCGATCGAAACGCTGCCACAGAGCATCGGCCGCCTGA
CAGCACTCCAGGTCCTTGAGGTGGAGCGCTGCGACGCTTTCCGCAGCCTG
CCCGACAGCATCGGCGGGCTGCAGTCCCTCGCGCACCTGACGATCACTGA
CACGGAGGCCCTTGTCGCGCTTCCAGACACCCTTTGCTCGCTGTCGGCGC
TCATTACCCTTGAGCTCAGCCGCTGCACGCAGCTCACGGCACTGCCGAAT
AGAGTCGGCGACATGCAGGCACTGGAGTACATTGATCTCGAGGACTGCGA
GCTCCTGGCCGCATTGCCAGACAGCATGGGTAACCTGCAATTGCTCAAGC
GGCTCTATATTGTGAACTGCCACCAGCTCACGGAGCTGCCACGCGCGCTG
CTCCAGTTGAACCGGCTCACTCGCATTGATGCAGAGGGATGCCAGGATGT
TGTAACAGCAACCGCAGAGGCTCTTGCGGCAGTGAACCTTGCTATAGAGG
CGGTCAGCAATCGCTGA
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protein sequence of jgi.p|Trimin1|162753

>Trimin1|162753|e_gw1.22.76.1 ID=Trimin1|162753|e_gw1.22.76.1|Name=jgi.p|Trimin1|162753|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=339bp
MLRAVLRATDSGPQRDALTLVKSVYHPTDAASLPACTVDLPALESLDLSH
CTELETLPCSIGNLTMLTLLDLTNCNSLMHLPASIGNLTALESLSLRGCD
KISRLPDTIGALASLETLTVSCCSDMAILPACLGDLAALTWLSISMCGTL
TALPDSICNLMHLRMLTLEELPIETLPQSIGRLTALQVLEVERCDAFRSL
PDSIGGLQSLAHLTITDTEALVALPDTLCSLSALITLELSRCTQLTALPN
RVGDMQALEYIDLEDCELLAALPDSMGNLQLLKRLYIVNCHQLTELPRAL
LQLNRLTRIDAEGCQDVVTATAEALAAVNLAIEAVSNR*
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mRNA from alignment at Contig_22:973234..974250+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6422 ID=mRNA_6422|Name=jgi.p|Trimin1|162753|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1017bp|location=Sequence derived from alignment at Contig_22:973234..974250+ (Tribonema minus UTEX_B_3156 )
ATGCTACGTGCAGTCCTCCGCGCCACGGATTCAGGACCTCAGCGAGATGC
TCTGACGCTAGTAAAGTCAGTGTATCATCCTACTGACGCCGCAAGCCTGC
CAGCGTGCACCGTAGACCTGCCGGCATTAGAAAGCCTCGATCTGAGCCAC
TGCACAGAGCTAGAGACCTTGCCTTGCAGCATTGGCAATCTGACGATGTT
AACGTTGCTTGATTTGACCAATTGCAATAGCCTGATGCATCTGCCTGCGA
GCATCGGCAATCTGACTGCGTTGGAGAGTCTTTCACTCCGCGGCTGCGAT
AAGATCTCACGCCTGCCTGATACCATCGGCGCTCTGGCCTCGCTGGAAAC
GCTCACGGTGTCCTGCTGCAGTGACATGGCAATACTGCCGGCGTGCCTCG
GTGACCTTGCAGCTCTCACGTGGCTGTCGATAAGCATGTGCGGCACCTTA
ACGGCCCTGCCTGACTCCATCTGCAACCTGATGCACTTGAGGATGCTCAC
GCTAGAGGAGCTGCCGATCGAAACGCTGCCACAGAGCATCGGCCGCCTGA
CAGCACTCCAGGTCCTTGAGGTGGAGCGCTGCGACGCTTTCCGCAGCCTG
CCCGACAGCATCGGCGGGCTGCAGTCCCTCGCGCACCTGACGATCACTGA
CACGGAGGCCCTTGTCGCGCTTCCAGACACCCTTTGCTCGCTGTCGGCGC
TCATTACCCTTGAGCTCAGCCGCTGCACGCAGCTCACGGCACTGCCGAAT
AGAGTCGGCGACATGCAGGCACTGGAGTACATTGATCTCGAGGACTGCGA
GCTCCTGGCCGCATTGCCAGACAGCATGGGTAACCTGCAATTGCTCAAGC
GGCTCTATATTGTGAACTGCCACCAGCTCACGGAGCTGCCACGCGCGCTG
CTCCAGTTGAACCGGCTCACTCGCATTGATGCAGAGGGATGCCAGGATGT
TGTAACAGCAACCGCAGAGGCTCTTGCGGCAGTGAACCTTGCTATAGAGG
CGGTCAGCAATCGCTGA
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Coding sequence (CDS) from alignment at Contig_22:973234..974250+

>mRNA_6422 ID=mRNA_6422|Name=jgi.p|Trimin1|162753|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1017bp|location=Sequence derived from alignment at Contig_22:973234..974250+ (Tribonema minus UTEX_B_3156 )
ATGCTACGTGCAGTCCTCCGCGCCACGGATTCAGGACCTCAGCGAGATGC
TCTGACGCTAGTAAAGTCAGTGTATCATCCTACTGACGCCGCAAGCCTGC
CAGCGTGCACCGTAGACCTGCCGGCATTAGAAAGCCTCGATCTGAGCCAC
TGCACAGAGCTAGAGACCTTGCCTTGCAGCATTGGCAATCTGACGATGTT
AACGTTGCTTGATTTGACCAATTGCAATAGCCTGATGCATCTGCCTGCGA
GCATCGGCAATCTGACTGCGTTGGAGAGTCTTTCACTCCGCGGCTGCGAT
AAGATCTCACGCCTGCCTGATACCATCGGCGCTCTGGCCTCGCTGGAAAC
GCTCACGGTGTCCTGCTGCAGTGACATGGCAATACTGCCGGCGTGCCTCG
GTGACCTTGCAGCTCTCACGTGGCTGTCGATAAGCATGTGCGGCACCTTA
ACGGCCCTGCCTGACTCCATCTGCAACCTGATGCACTTGAGGATGCTCAC
GCTAGAGGAGCTGCCGATCGAAACGCTGCCACAGAGCATCGGCCGCCTGA
CAGCACTCCAGGTCCTTGAGGTGGAGCGCTGCGACGCTTTCCGCAGCCTG
CCCGACAGCATCGGCGGGCTGCAGTCCCTCGCGCACCTGACGATCACTGA
CACGGAGGCCCTTGTCGCGCTTCCAGACACCCTTTGCTCGCTGTCGGCGC
TCATTACCCTTGAGCTCAGCCGCTGCACGCAGCTCACGGCACTGCCGAAT
AGAGTCGGCGACATGCAGGCACTGGAGTACATTGATCTCGAGGACTGCGA
GCTCCTGGCCGCATTGCCAGACAGCATGGGTAACCTGCAATTGCTCAAGC
GGCTCTATATTGTGAACTGCCACCAGCTCACGGAGCTGCCACGCGCGCTG
CTCCAGTTGAACCGGCTCACTCGCATTGATGCAGAGGGATGCCAGGATGT
TGTAACAGCAACCGCAGAGGCTCTTGCGGCAGTGAACCTTGCTATAGAGG
CGGTCAGCAATCGCTGA
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