mRNA_6418 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|44171
Unique NamemRNA_6418
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|44171 vs. uniprot
Match: A0A836CGS9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGS9_9STRA)

HSP 1 Score: 301 bits (772), Expect = 2.260e-101
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 2 
Query:  221 MPRRRCRTRVSVCFLAAAAVALRTREEGLAVADVAWGGGVCVRLAVCTDACVAVCICALRGANVRATHSLPSHELRRYPLLRHRDRALVRAPEQCIMRLNGICSCRSTRRAPQSRAPLHRGALGPRVLKTRRSVPLQALSERDACRQPPLSC 676
            MPRRRCRTRVSVCFLAAAAVALRTREEGLAVADVAWGGGVCVRLAVCTDACVAVCICALRGANVRATHSLPSHELRRYPLLRHRDRALVRAPEQCIMRLNGICSCRSTRRAPQSRAPLHRGALGPRVLKTRRSVPLQALSERDACRQPPLSC
Sbjct:    1 MPRRRCRTRVSVCFLAAAAVALRTREEGLAVADVAWGGGVCVRLAVCTDACVAVCICALRGANVRATHSLPSHELRRYPLLRHRDRALVRAPEQCIMRLNGICSCRSTRRAPQSRAPLHRGALGPRVLKTRRSVPLQALSERDACRQPPLSC 152
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|44171 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CGS9_9STRA2.260e-101100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_22contigContig_22:944988..945847 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|44171|CE44170_80
Hectar predicted targeting categorysignal peptide
TranscriptId44493
TrackFilteredModels1
ProteinId44171
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|44171gene_6418Tribonema minus UTEX_B_3156 geneContig_22 944988..945847 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6418_1exon_6418_1Tribonema minus UTEX_B_3156 exonContig_22 944988..945847 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_6418UTR3_6418Tribonema minus UTEX_B_3156 three_prime_UTRContig_22 944988..945168 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6418CDS_6418Tribonema minus UTEX_B_3156 CDSContig_22 945169..945627 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_6418UTR5_6418Tribonema minus UTEX_B_3156 five_prime_UTRContig_22 945628..945847 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|44171Trimin1|44171|CE44170_80Tribonema minus UTEX_B_3156 polypeptideContig_22 945169..945627 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6418 ID=mRNA_6418|Name=jgi.p|Trimin1|44171|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=860bp|location=Sequence derived from alignment at Contig_22:944988..945847- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TGCAAGTAGTTTGTCTGCTGCATTGTGTGACTGCAACAGCATGCGGTGTG
CAGGAACCGTACCCTTGCACAAAAAGCGCTGAATGTACGGGCAGGGCATG
CACCGGCAGCGCCCCCGCAGGGGGTCGTGGCAAGTGCGCAAATGCACACA
TACGCCTACCAGCCATGTGCACGTGCCACGCCGGTGATCTTTGCTGACCC
AGAGCATCTGCTTGGCGTGTATGCCAAGGCGTCGCTGCCGCACACGAGTC
AGCGTATGCTTTCTTGCAGCCGCGGCCGTGGCGTTGCGTACGAGAGAAGA
GGGACTCGCTGTCGCTGACGTTGCTTGGGGGGGCGGGGTCTGTGTGCGGC
TGGCTGTGTGCACTGACGCCTGCGTCGCTGTGTGCATCTGCGCGCTGCGA
GGCGCCAATGTACGAGCCACACACAGCCTGCCCAGCCATGAGCTGCGCAG
GTACCCGCTGCTGCGTCACCGCGACCGCGCGCTGGTGCGTGCTCCAGAGC
AGTGCATCATGCGGCTCAATGGCATCTGCTCGTGTCGCTCGACACGACGC
GCACCGCAGTCGCGCGCGCCGCTGCACCGCGGCGCACTTGGTCCCCGGGT
ACTCAAGACCAGACGCTCCGTTCCTTTGCAAGCTCTGAGCGAGAGAGACG
CATGTCGGCAGCCGCCGCTGAGCTGCTGAGGCACACGTCCGCAATCAGTC
GTCACAGACACTGCCCCCACCGCCAAGTCGCCGCCGTTGCCAAGTGCCTT
TTGGTCCCCTGCATGCCCCCACTTAACGGCAGGCTAGAGGAGCGCGTGCA
AGCTTGCATCTAGGCAGAAAGGGCCACGCCCCTGCGCGCTGATACCGCCC
TGCTTCCCCC
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protein sequence of jgi.p|Trimin1|44171

>Trimin1|44171|CE44170_80 ID=Trimin1|44171|CE44170_80|Name=jgi.p|Trimin1|44171|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=153bp
MPRRRCRTRVSVCFLAAAAVALRTREEGLAVADVAWGGGVCVRLAVCTDA
CVAVCICALRGANVRATHSLPSHELRRYPLLRHRDRALVRAPEQCIMRLN
GICSCRSTRRAPQSRAPLHRGALGPRVLKTRRSVPLQALSERDACRQPPL
SC*
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mRNA from alignment at Contig_22:944988..945847-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6418 ID=mRNA_6418|Name=jgi.p|Trimin1|44171|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=860bp|location=Sequence derived from alignment at Contig_22:944988..945847- (Tribonema minus UTEX_B_3156 )
TGCAAGTAGTTTGTCTGCTGCATTGTGTGACTGCAACAGCATGCGGTGTG
CAGGAACCGTACCCTTGCACAAAAAGCGCTGAATGTACGGGCAGGGCATG
CACCGGCAGCGCCCCCGCAGGGGGTCGTGGCAAGTGCGCAAATGCACACA
TACGCCTACCAGCCATGTGCACGTGCCACGCCGGTGATCTTTGCTGACCC
AGAGCATCTGCTTGGCGTGTATGCCAAGGCGTCGCTGCCGCACACGAGTC
AGCGTATGCTTTCTTGCAGCCGCGGCCGTGGCGTTGCGTACGAGAGAAGA
GGGACTCGCTGTCGCTGACGTTGCTTGGGGGGGCGGGGTCTGTGTGCGGC
TGGCTGTGTGCACTGACGCCTGCGTCGCTGTGTGCATCTGCGCGCTGCGA
GGCGCCAATGTACGAGCCACACACAGCCTGCCCAGCCATGAGCTGCGCAG
GTACCCGCTGCTGCGTCACCGCGACCGCGCGCTGGTGCGTGCTCCAGAGC
AGTGCATCATGCGGCTCAATGGCATCTGCTCGTGTCGCTCGACACGACGC
GCACCGCAGTCGCGCGCGCCGCTGCACCGCGGCGCACTTGGTCCCCGGGT
ACTCAAGACCAGACGCTCCGTTCCTTTGCAAGCTCTGAGCGAGAGAGACG
CATGTCGGCAGCCGCCGCTGAGCTGCTGAGGCACACGTCCGCAATCAGTC
GTCACAGACACTGCCCCCACCGCCAAGTCGCCGCCGTTGCCAAGTGCCTT
TTGGTCCCCTGCATGCCCCCACTTAACGGCAGGCTAGAGGAGCGCGTGCA
AGCTTGCATCTAGGCAGAAAGGGCCACGCCCCTGCGCGCTGATACCGCCC
TGCTTCCCCC
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Coding sequence (CDS) from alignment at Contig_22:944988..945847-

>mRNA_6418 ID=mRNA_6418|Name=jgi.p|Trimin1|44171|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=459bp|location=Sequence derived from alignment at Contig_22:944988..945847- (Tribonema minus UTEX_B_3156 )
ATGCCAAGGCGTCGCTGCCGCACACGAGTCAGCGTATGCTTTCTTGCAGC
CGCGGCCGTGGCGTTGCGTACGAGAGAAGAGGGACTCGCTGTCGCTGACG
TTGCTTGGGGGGGCGGGGTCTGTGTGCGGCTGGCTGTGTGCACTGACGCC
TGCGTCGCTGTGTGCATCTGCGCGCTGCGAGGCGCCAATGTACGAGCCAC
ACACAGCCTGCCCAGCCATGAGCTGCGCAGGTACCCGCTGCTGCGTCACC
GCGACCGCGCGCTGGTGCGTGCTCCAGAGCAGTGCATCATGCGGCTCAAT
GGCATCTGCTCGTGTCGCTCGACACGACGCGCACCGCAGTCGCGCGCGCC
GCTGCACCGCGGCGCACTTGGTCCCCGGGTACTCAAGACCAGACGCTCCG
TTCCTTTGCAAGCTCTGAGCGAGAGAGACGCATGTCGGCAGCCGCCGCTG
AGCTGCTGA
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