mRNA_6314 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|43532
Unique NamemRNA_6314
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|43532 vs. uniprot
Match: A0A835Z0I7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0I7_9STRA)

HSP 1 Score: 545 bits (1405), Expect = 4.770e-194
Identity = 288/288 (100.00%), Postives = 288/288 (100.00%), Query Frame = 2 
Query:   26 MAYDMSLDTAHDFLLQDLPYMPEVCLFIYALVGAARVKSGPAKNMYWAQSLVLTFLMCFGGGIVAPFLLGKPPVILINDLLVVAVLGSWLVVNRLEEPVGALLRAPVISQALAFMAEVFRANGFCRMVQVAFKEIPAGKYYPIPFWGPVLLGTIAGCAGMFLPFDKGLASIKGGSPWPLQSAFYGSLAFHLLAHDPHVRAALAPYAGDYTADAARACVVAFFAAVATLQTYAGPHFNPFSPLHRVAYAISGVKAPGANGAPAAXXXXXXXXXXXXXXAPDSKKDKKNK 889
            MAYDMSLDTAHDFLLQDLPYMPEVCLFIYALVGAARVKSGPAKNMYWAQSLVLTFLMCFGGGIVAPFLLGKPPVILINDLLVVAVLGSWLVVNRLEEPVGALLRAPVISQALAFMAEVFRANGFCRMVQVAFKEIPAGKYYPIPFWGPVLLGTIAGCAGMFLPFDKGLASIKGGSPWPLQSAFYGSLAFHLLAHDPHVRAALAPYAGDYTADAARACVVAFFAAVATLQTYAGPHFNPFSPLHRVAYAISGVKAPGANGAPAAXXXXXXXXXXXXXXAPDSKKDKKNK
Sbjct:    1 MAYDMSLDTAHDFLLQDLPYMPEVCLFIYALVGAARVKSGPAKNMYWAQSLVLTFLMCFGGGIVAPFLLGKPPVILINDLLVVAVLGSWLVVNRLEEPVGALLRAPVISQALAFMAEVFRANGFCRMVQVAFKEIPAGKYYPIPFWGPVLLGTIAGCAGMFLPFDKGLASIKGGSPWPLQSAFYGSLAFHLLAHDPHVRAALAPYAGDYTADAARACVVAFFAAVATLQTYAGPHFNPFSPLHRVAYAISGVKAPGANGAPAAXXXXXXXXXXXXXXAPDSKKDKKNK 288
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BLAST of jgi.p|Trimin1|43532 vs. uniprot
Match: D7G2H0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2H0_ECTSI)

HSP 1 Score: 241 bits (616), Expect = 3.040e-74
Identity = 127/294 (43.20%), Postives = 168/294 (57.14%), Query Frame = 2 
Query:   44 LDTAHDFLLQDLPYMPEVCLFIYALVGAAR-------------------------------VKSGPAKNMYWAQSLVLTFLMCFGGGIVAPFLLGKPPVILINDLLVVAVLGSWLVVNRLEEPVGALLRAPVISQALAFMAEVFRANGFCRMVQVAFKEIPAGKYYPIPFWGPVLLGTIAGCAGMFLPFDKGLASIKGGSPWPLQSAFYGSLAFHLLAHDPHVRAALAPYAGDYTADAA------------RACVVAFFAAVATLQTYAGPHFNPFSPLHRVAYAISGVKAPGA 796
            ++ A DFL Q+  Y  EVCL  +AL  +AR                               ++    K M+WA+SLV+T++M FGGGI+APFLLGKPPV+ +NDL+V  V   W V NR E P+ AL+  P++ Q +  ++EVFRAN  C +V ++   +  GK+YPI  WGP+LLGT+ GC G+FLP DKGL  +K G+PWPLQSAFYGS+ F+L  +DP+V        G Y  DAA            RA V  F   VA  QT   P FNPF+P+H V Y ++GV  P A
Sbjct:    1 MENAVDFLTQNWEYGAEVCLAAFALFHSAREIKQACDALRLACAGSGALTFKQKAKILVRKIEKDSGKQMFWAESLVMTYMMAFGGGILAPFLLGKPPVMFVNDLIVPLVAVCWFVSNRAEGPIFALINTPIMKQVILVLSEVFRANSMCGIVVLSNSILKPGKHYPIALWGPILLGTVGGCGGLFLPLDKGLKGLKNGAPWPLQSAFYGSMFFNLFVYDPNV--------GPYLRDAAALFLDGDLVVQGRAIVAGFLCVVALAQTLISPAFNPFTPVHNVVYTVTGVPNPEA 286
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BLAST of jgi.p|Trimin1|43532 vs. uniprot
Match: A0A4D9CX56_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CX56_9STRA)

HSP 1 Score: 160 bits (405), Expect = 3.070e-41
Identity = 94/248 (37.90%), Postives = 131/248 (52.82%), Query Frame = 2 
Query:   47 DTAHDFLLQDLPYMPEVCLFIYALVGAARVKSGPAKNMYWAQSLVLTFLMCFGGGIVAPFLLGKPPVILINDLLVVAVLGSWLVVNRLEEPVGALLRAPVISQALAFMAEVFRANGFCRMVQVAFKEIPAGKYYPIPFWGPVLLGTIAGCAGMFLPFDKGLASIKGGSPWPLQSAFYGSLAFHLLAHDPHVRAALA---PYAGDYTADAARACVVAFFAAVATLQTYAGPHFNPFSPLHRVAYAISGV 781
            + A  FLL   PY  EVCLF + L  + RV+  P+    W   LVL FL  F GG + P   G+ PV+ +NDLLV  V  SW +V+     VG LL+       L  + E++RA    + V  A  +I  G YYPI   GPVL+GT++G  G F+P D+G++ +  G P  LQ+     L +HL AHDP +  A     P       +  +A  V FF A+A L    GP +NPF+P+H + Y + G+
Sbjct:   16 EVARKFLLMQYPYEFEVCLFAFCLGASMRVR--PSAQYSWLHHLVLVFLTGFAGGTIIPMFFGRTPVLFVNDLLVPLVCLSWYLVHYTR--VGGLLQTSPCKFLLVALFEIYRAASILKTVGQAATDIAPGPYYPIAVVGPVLVGTLSGSMGAFMPPDRGISFLATGVPLNLQTTLLACLFYHLAAHDPALPGAYLRGLPALRLSDPENLKALTVFFFVAMAFLSLVKGPDYNPFTPVHTLLYQVLGI 259
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BLAST of jgi.p|Trimin1|43532 vs. uniprot
Match: A0A7S2EDN4_TRICV (Hypothetical protein n=2 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EDN4_TRICV)

HSP 1 Score: 107 bits (267), Expect = 2.550e-23
Identity = 65/186 (34.95%), Postives = 93/186 (50.00%), Query Frame = 2 
Query:   62 FLLQDLPYMPEVCLFIYALVGAARVKSGPAKNMYWAQSLVLTFLMCFGGGIVAPFLLGKPPVILINDLLVVAVLGSWLVVNRLEEPV--GALLRAPVISQALAFMAEVFRANGFCRMVQVAFKEIPAGKYYPIPFWGPVLLGTIAGCAGMFLPFDKGLASIKGGSPWPLQSAFYGSLAFHLLAHDP 613
            FLL   P +  +C+F YA+    ++ SG   +   A   V   + C GGGI+ P LL   PV L ND LV+A+L ++ +   L  P+       + ++      + E FR      +   A  +IP    +PIP +GP+  G IAGC G FLPF+KGL  IKGG   P+ SA   +  FH+    P
Sbjct:   26 FLLMSTPSIRYMCMFGYAMFHGNKIFSGLPASSSTAFKFVSYVMACVGGGIIVPILLNGLPVALANDALVLAMLSAFGI--HLYFPILREVFKLSDLLKATFVVLFETFRCGVVIGLTTAAAAKIPP-SVFPIPVFGPIFCGAIAGCGGAFLPFNKGLEPIKGGLASPMLSALVVAACFHIFMSTP 208
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BLAST of jgi.p|Trimin1|43532 vs. uniprot
Match: A0A7S4IEG9_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IEG9_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 5.180e-20
Identity = 59/185 (31.89%), Postives = 88/185 (47.57%), Query Frame = 2 
Query:   59 DFLLQDLPYMPEVCLFIYALVGAARVKSGPAKNMYWAQSLVLTFLMCFGGGIVAPFLLGKPPVILINDLLVVAVLGSWLVVNRLEEPVGALLRAPVISQALAFMAEVFRANGFCRMVQVAFKEIPAGKYYPIPFWGPVLLGTIAGCAGMFLPFDKGLASIKGGSPWPLQSAFYGSLAFHLLAHDP 613
            DFLL     +  +C+F Y +    +V S    +   +   V   + CFGGGI+ P  L   PV + ND L +  L S+ + +        +  + ++   L  + E  RA         A  +IP   ++  P +GP+  GTIAGC G FLPF+KGL  IK G   P+ +A  G+  FHL  + P
Sbjct:   25 DFLLVSSKEIRYMCIFGYTIFHGHKVFSSLGPDSPPSLKFVSLLMACFGGGIIVPIFLNIYPVPIANDALTLGALVSFTIHHYFPILREVINLSDILKVVLVVLFETLRAMVVVNFTSAAADKIPP-SFFSFPLFGPIFCGTIAGCGGAFLPFNKGLDPIKKGLAPPMLTAAIGATMFHLFLNTP 208
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BLAST of jgi.p|Trimin1|43532 vs. uniprot
Match: A0A1E7EP48_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EP48_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 1.090e-19
Identity = 64/189 (33.86%), Postives = 88/189 (46.56%), Query Frame = 2 
Query:   59 DFLLQDLPYMPEVCLFIYALVGAARV------KSGPAKNMYWAQSLVLTFLMCFGGGIVAPFLLGKPPVILINDLLVVAVLGSWLVVNRLEEPVGALLRAPVISQALAFMAEVFRANGFCRMVQVAFKEIPAGKYYPIPFWGPVLLGTIAGCAGMFLPFDKGLASIKGGSPWPLQSAFYGSLAFHLLAH 607
            +F+L +   +  +C+  Y  +   +V       S   K  + A  L+   L C GGGI+ P  L   PV +  D   +A+L S  VV+ L     AL+             E  R       V +A   I A   +  P +GP++ GTI GC G FLPFDKGLA IK G P P+ +AF G+  FHL  H
Sbjct:   42 NFVLMNTNEIKYMCMIGYTFLHGCKVFKKIDGNSSNEKKKFSAYKLITMILACTGGGILVPIFLNTIPVTIAIDAYPIAILQSRSVVSHLSAITNALM---------VVFYETIRTYVVTLFVGLAASTI-APSQFSFPVFGPIICGTIGGCGGAFLPFDKGLAPIKDGLPPPVFTAFTGATFFHLFTH 220
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BLAST of jgi.p|Trimin1|43532 vs. uniprot
Match: A0A7S1SEQ8_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1SEQ8_ALECA)

HSP 1 Score: 96.7 bits (239), Expect = 6.530e-19
Identity = 56/188 (29.79%), Postives = 94/188 (50.00%), Query Frame = 2 
Query:   65 LLQDLPYMPEVCLFIYALVGAARVKSGPAKNMYWAQSLVLTFLMCFGGGIVAPFLLGKPPVILINDLLVVAVLGSWLVVNRLEEPVGA---LLRAPVISQALAFMAEVFRANGFCRMVQVAFKEI------PAGKYYPIPFWGPVLLGTIAGCAGMFLPFDKGLASIKGGSPWPLQSAFYGSLAFHLL 601
            L    P++ EV +  + L  +  V+     N +W ++LV T +  FGGG +AP ++G  PV L  +     ++ SW V + +         + R+     AL     +F+       ++VA K +      P  +Y+ +P  GP++ G + GC G FLPFDKGL  I  G  WP+ +AF+G++ ++ L
Sbjct:   78 LTDKAPWVWEVTVLGFMLKVSQDVRE-QVTNFFWPKALVTTAIAAFGGGFLAPLIVGHCPVPLREETFAWFLVFSWYVTHHVPFVSATWCEIARSKPGHIALTIFFCIFKTQQIVGSIEVAAKAVEHEPLMPHSRYFFVPMAGPLVCGFLGGCGGAFLPFDKGLRPISEGKQWPVTAAFFGTVIYYFL 264
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BLAST of jgi.p|Trimin1|43532 vs. uniprot
Match: A0A7S3MDR8_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MDR8_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 2.060e-16
Identity = 46/158 (29.11%), Postives = 81/158 (51.27%), Query Frame = 2 
Query:  155 NMYWAQSLVLTFLMCFGGGIVAPFLLGKPPVILINDLLVVAVLGSWLVVNRL---EEPVGALLRAPVISQALAFMAEVFRANGFCRMVQVAFKEI------PAGKYYPIPFWGPVLLGTIAGCAGMFLPFDKGLASIKGGSPWPLQSAFYGSLAFHLL 601
              YWA+++  T +  FGGG +AP ++ + PV L+ +  +  V+ SW +V+ L    + +  L++  V  +       +F+       +++A K +      P   Y+P     P+L G + GC G FLPF  GLA I+ G  W +++AF   LA+ ++
Sbjct:   68 GFYWAKAVTATGIAAFGGGFLAPLIVARTPVPLMEETFLWMVVVSWYIVHNLGPLSDFLSDLMKVEVSKKIFTVAFGIFKTTQIVGGLELAAKAVAAEDLLPHSAYFPFALAAPLLCGFVGGCGGAFLPFTNGLAPIEEGKVWNIRAAFLAPLAYLIM 225
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BLAST of jgi.p|Trimin1|43532 vs. uniprot
Match: A0A813H4M2_POLGL (Hypothetical protein n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813H4M2_POLGL)

HSP 1 Score: 89.4 bits (220), Expect = 2.250e-16
Identity = 55/187 (29.41%), Postives = 91/187 (48.66%), Query Frame = 2 
Query:   65 LLQDLPYMPEVCLFIYALVGAARVKSGPAKNMYWAQSLVLTFLMCFGGGIVAPFLLGKPPVILINDLLVVAVLGSWLVVNRLEEPVGA---LLRAPVISQALAFMAEVFRANGFCRMVQVAFKEI------PAGKYYPIPFWGPVLLGTIAGCAGMFLPFDKGLASIKGGSPWPLQSAFYGSLAFHL 598
            L    P+  EV +  Y L  A  V+    +  YWA+SLV+T +  FGGG +AP ++G  P  L  +    A + SW V + +     +   L R   +   L  +  +F+      +++++ K I      P  +Y+  P   P+L G + GC G FLP  KGL  I+ G  WP+ +AF  ++ +++
Sbjct:   69 LTDKAPWAWEVVVLGYMLKCAHDVRE-QVEGFYWAKSLVVTGIAAFGGGFLAPAIVGHCPPPLREETFFWACVFSWYVTHYVPYVSASWKDLSRTRAMQLLLTVLFGIFKTQQIVGLIELSAKAIAEENLIPQSRYFSQPCAAPLLCGFLGGCGGAFLPLSKGLLPIEQGKQWPVSAAFLATVFYYV 254
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BLAST of jgi.p|Trimin1|43532 vs. uniprot
Match: A0A7S4DDZ0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DDZ0_HETAK)

HSP 1 Score: 75.1 bits (183), Expect = 1.240e-11
Identity = 40/108 (37.04%), Postives = 60/108 (55.56%), Query Frame = 2 
Query:  464 GPVLLGTIAGCAGMFLPFDKGLASIKGGSPWPLQSAFYGSLAFHLLAHDPHV-RAALAPYAGDYTAD--AARACVVAFFAAVATLQTYAGPHFNPFSPLHRVAYAISG 778
            GPVL+G IA  +G F+P  KGL  I+   PW +Q     ++ +H+   D +V  A +  Y   +  D   AR  V+AFF  +  + T  G H NPF+P+H+V Y ++G
Sbjct:    3 GPVLIGIIATSSGNFIPISKGLKQIEKAVPWNIQCGIISAIFYHVAIFDDYVVGATVRNYIVGHQLDRLTARFLVIAFFVVMGQVHTRYGSHVNPFAPVHKVLYRVTG 110
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|43532 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A835Z0I7_9STRA4.770e-194100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7G2H0_ECTSI3.040e-7443.20Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A4D9CX56_9STRA3.070e-4137.90Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A7S2EDN4_TRICV2.550e-2334.95Hypothetical protein n=2 Tax=Trieres chinensis Tax... [more]
A0A7S4IEG9_9STRA5.180e-2031.89Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A1E7EP48_9STRA1.090e-1933.86Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
A0A7S1SEQ8_ALECA6.530e-1929.79Hypothetical protein n=1 Tax=Alexandrium catenella... [more]
A0A7S3MDR8_9STRA2.060e-1629.11Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A813H4M2_POLGL2.250e-1629.41Hypothetical protein n=2 Tax=Polarella glacialis T... [more]
A0A7S4DDZ0_HETAK1.240e-1137.04Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_22contigContig_22:14026..20564 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|43532|CE43531_171
Max annot lvl2759|Eukaryota
EggNOG OGs2BW3U@1|root,2SEWS@2759|Eukaryota
Evalue3.46e-76
Seed ortholog2880.D7G2H0
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-00_005940.1
TranscriptId43854
TrackFilteredModels1
ProteinId43532
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|43532gene_6314Tribonema minus UTEX_B_3156 geneContig_22 14026..20564 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|43532Trimin1|43532|CE43531_171Tribonema minus UTEX_B_3156 polypeptideContig_22 14051..20315 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6314_1exon_6314_1Tribonema minus UTEX_B_3156 exonContig_22 14026..14158 +
exon_6314_2exon_6314_2Tribonema minus UTEX_B_3156 exonContig_22 15202..15423 +
exon_6314_3exon_6314_3Tribonema minus UTEX_B_3156 exonContig_22 17831..17997 +
exon_6314_4exon_6314_4Tribonema minus UTEX_B_3156 exonContig_22 19946..20564 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_6314UTR5_6314Tribonema minus UTEX_B_3156 five_prime_UTRContig_22 14026..14050 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6314CDS_6314Tribonema minus UTEX_B_3156 CDSContig_22 14051..14158 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_6314UTR3_6314Tribonema minus UTEX_B_3156 three_prime_UTRContig_22 20316..20564 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6314 ID=mRNA_6314|Name=jgi.p|Trimin1|43532|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1141bp|location=Sequence derived from alignment at Contig_22:14026..20564+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GCGGGAGCAGCAGCGGCAGGGAGAGATGGCGTACGACATGTCTCTCGACA
CCGCGCATGATTTTCTGTTGCAAGATCTGCCGTACATGCCAGAGGTTTGC
CTCTTCATCTATGCCCTGGTGGGCGCAGCCAGGGTCAAGAGCGGACCTGC
CAAGAACATGTACTGGGCGCAGAGCCTCGTGCTGACGTTCCTCATGTGCT
TCGGCGGCGGCATTGTGGCGCCCTTCCTGCTGGGCAAGCCGCCGGTGATC
CTCATCAACGACTTGCTGGTGGTGGCGGTGCTGGGGTCGTGGCTGGTGGT
GAACCGCTTGGAGGAGCCGGTGGGGGCGCTGCTGCGGGCGCCCGTAATCA
GCCAGGCGCTCGCGTTCATGGCAGAGGTGTTCCGCGCCAACGGGTTCTGC
CGCATGGTGCAGGTCGCCTTTAAGGAGATCCCCGCTGGCAAGTACTACCC
CATACCGTTCTGGGGGCCGGTGCTCCTCGGGACCATCGCCGGCTGCGCTG
GCATGTTCCTGCCATTCGACAAGGGGCTGGCGAGCATCAAGGGCGGGTCC
CCCTGGCCCCTGCAGAGCGCCTTCTACGGCTCGCTCGCGTTCCACCTCCT
CGCGCACGACCCGCACGTGCGCGCCGCCCTTGCGCCGTACGCCGGCGACT
ACACCGCGGACGCCGCGCGCGCGTGCGTCGTCGCCTTCTTCGCCGCCGTC
GCGACGCTCCAGACGTACGCGGGACCGCACTTCAACCCCTTCTCCCCCCT
GCACCGCGTCGCGTACGCGATTTCGGGGGTCAAGGCGCCGGGCGCGAATG
GTGCGCCTGCTGCGGCGCCCGCGACGGCCGGTGCTCCCGCGGGCGCCGCG
CCGCCCGCCCCTGACTCCAAGAAGGACAAAAAGAACAAGTAGGGCGCGCG
CTGCGTGGGCAGCGGCGGCGGCGGCAGCAGCGGCGGCGGCGGCGGCAGCT
GTGCAGCAGCAGCGGCGGGGCAGCAGAGGCGGCGGCGGCAGCTGCGGCGG
CGGCAGCTGCGGCGGCGGCGGCAGCGGCGGCAGGGCAGCAAAGGCGGCGG
CGGCAGCGGCGGTGGCGCAGCGGAGGCGGCGGCGGCGGCGACGGCAGCGG
CGCCTGACTCGAAGAGCAATAAGAAGGGGGGGGGGGGGGAC
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protein sequence of jgi.p|Trimin1|43532

>Trimin1|43532|CE43531_171 ID=Trimin1|43532|CE43531_171|Name=jgi.p|Trimin1|43532|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=289bp
MAYDMSLDTAHDFLLQDLPYMPEVCLFIYALVGAARVKSGPAKNMYWAQS
LVLTFLMCFGGGIVAPFLLGKPPVILINDLLVVAVLGSWLVVNRLEEPVG
ALLRAPVISQALAFMAEVFRANGFCRMVQVAFKEIPAGKYYPIPFWGPVL
LGTIAGCAGMFLPFDKGLASIKGGSPWPLQSAFYGSLAFHLLAHDPHVRA
ALAPYAGDYTADAARACVVAFFAAVATLQTYAGPHFNPFSPLHRVAYAIS
GVKAPGANGAPAAAPATAGAPAGAAPPAPDSKKDKKNK*
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mRNA from alignment at Contig_22:14026..20564+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6314 ID=mRNA_6314|Name=jgi.p|Trimin1|43532|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=6539bp|location=Sequence derived from alignment at Contig_22:14026..20564+ (Tribonema minus UTEX_B_3156 )
GCGGGAGCAGCAGCGGCAGGGAGAGATGGCGTACGACATGTCTCTCGACA
CCGCGCATGATTTTCTGTTGCAAGATCTGCCGTACATGCCAGAGGTTTGC
CTCTTCATCTATGCCCTGGTGGGCGCAGCCAGGGTGAGCGTGAGCGGTGA
TAGGATTTACTGGCCTTTGTGCATGCACAGCTTGCGACTGAGATGGGTTG
CAAGCCCTCAAGGCGTATCTGGTCAAGTGGCGGCAGTGCATAGACTGCTG
GCTTTTGTCGTATGAAAGCACGCATGCTTACGGCTCACGTTGAATGTTGC
AGATGCAAGATGGGAAGATCATGCTACTGAATGGCTGCCTCGGTGCTCCT
AGCGCGCATAGCGTTCGTGCTCAGCGCGTTGCATCGCAATGAATGTCAGG
GGCTCCATATTTGAAGTCACTGGTCTGTGTCATGGTGTTGCCGCCCATCA
AACAAGCCCGGACCCTTCTAGCACGGTGCACGTTACTTGCTTCAAAGTAG
TGGACCGAGCAGAATGCGGTAGTGTATGGCTTGTAAAGTTCTACAAATGG
TGCAATCTAGTGAAAAAAAATGGCAGCCTCACAAGCGCATCAGCACCATA
CAGCACGACTTGAAGTCACGATGTGCGTGCTGGCTGGTCCATTGATGGTT
GCAGGGCTTGCCTTCGATCGTGTCGTCATGATCGAAGTCTGATGCGCACC
GTCATCTGGTGATGCTCTGATTCACCACCTCTGGCACTTGATTTGCAGTT
CGCACTTCACTTGCTTCGTGTGCTCGCGTGTGCATGCCATCTCTTATTGA
CGCTCTTGCTCGCTGCTACCCTGTCTCTCTCTCTACCTCTCTCTGCGCGG
CGCGCGCACTTGCACGTCAAGAGCGGGCCCGCCAAAAATATGTACCGGGC
GCAGAGCCTCGTGCTGACGCTCCTCACTTGCTTCGTGTGCTCGCCACCAG
AAACAATCTTAAAAGACGCTCTTGCTCGATGCCAAGACTATCTCTCTGTC
TGACTGCACGTGCGCGCGCACACTGGTCAAGAGCGGCCCCGCCAAGAACA
TGTACTGGGCGCAGAGCCTCGTGCTGACGTTCTTCACTTGCCTGGTGTGC
TCGCCCGCACACGCCATCTCTCATCGACGCTCTTGCTCGCTGCCAACATT
GTCTCTCTCTCTCTCTATTTCTGCAGGTCAAGAGCGGACCTGCCAAGAAC
ATGTACTGGGCGCAGAGCCTCGTGCTGACGTTCCTCATGTGCTTCGGCGG
CGGCATTGTGGCGCCCTTCCTGCTGGGCAAGCCGCCGGTGATCCTCATCA
ACGACTTGCTGGTGGTGGCGGTGCTGGGGTCGTGGCTGGTGGTGAACCGC
TTGGAGGAGCCGGTGGGGGCGCTGCTGCGGGCGCCCGTAATCAGCCAGGT
GAGCGCTGCTGCAGTATGAAGACAAAAGTTGAAGTAGCTATATTACACTT
CATGCATATGATTCCTGAAGTATGCGCCCGTATTTAGCCTGCTACAGTGA
TAGAAGGGGAAAAGCAACACATCACGAACTTTGAAGTATATAATCATTGA
TATACGCAGCTGCTGCTGGCGCCCATTGTCAGCCAGGTGAGCACTGCTAG
ACGAAGTTGAATCAATTACCTCCTCCTGCTTGTTCATTTCTGCGTCTCAC
TTTATAGTACTTCGAAGTACTTGAAACACATTACTGCTGCGGGCGCCCGT
GGTCAGCCACGCGAGCGCTGCTAGGTGGGAAGTTGAATCAAACACCTACT
TCTACCATCTATAACCAGTTCGCGTTTGTGATACGGTACTTTTTATTAAT
TCTCGCTCAGGGCGCGAAAAAGCCCAGATGAATGGCATCTAACTTGAAGC
GTGCTATACGGACGGAATCTACATGTCGTGTGACAGTCTCAAAGTGTCTC
AACGACCACCATATGATACGGTACTTGAAGTACGCAACTGCTGCGGGCGC
CCGTGGTGAGCCAGGGGAGGCTGCCAGGTGGAGAAAGTTGAATCCACTAC
CTACTTCTTTTTCCAGCCACACTTCATGTTTGTGATACTTGACCTACGCA
ACTGCTGCGGGCGCCTGTGGTCAGCCACGGGAGCGCTGCCAGGTATAAAG
TTGAATCAACCACCTACATATTCTACAAACACACTTCAATCTTGTAATAC
TTGAAGTACGTAACTGCTGCGGGCGCCTGTGGTCAGCCACGGGAGCGCTG
CCAGGTATAAAGTTGAATCAACCACCTACTTTTTTCTACAAACACACTTT
GAGTTTGTAATACTTCAAGTACGTAACTCCTGGGGGCACCCGTGGTCAGC
CTCGTGGAGTGCGCGGGTGCGCATACTGGCTGCAGCATCAGCTCAAGTCC
AATGGCATTCTTCGAATCTGATAAGCGCACGGTGGTGCTACACGGGGGCG
CCTCAACCCTTAACCTACACCAGTTGACCCCCAACCCTAAGCCATGCAGC
CTCGCCTCAACACAAGTGTCATCGACCATGTAGCCATGGCGGCAGTGCCC
GGACTGTAGCTGGCCAGGGAGCACGTTGGCGGCTCTGGCTGGCCGCGAAC
CTGCAGGCTCGCGCCATCCGGCGAGTGGGCATGGATCGCAGCGCTGCTGC
AGAGCTTACCTGAATTCCCACGGATTGTGAAAATTGAAGTGCCAGGCGCA
ATCAGGCTGACCTGGCCGCAACAGCGCTGGAATCCGGCGGGTTATTTTCC
GCATCAGACATCGATGGGAGCGCTGCTGCTGACATTTGGCAGCGCTTGGA
GCCATTCGCATCATGCGCTTGGCGCATCGTACGTGGCAGCGCTCAGCTCT
GATGTGGCAGCGCTCAGCGCTTATATCTCTATGTGTCAGTGCTCGATGCC
CCACATGCGTCCCACATGTGGCAGCACTCAGCACACACATGTGTCAGTGC
TCAGTGTCCACGTGTGGCAGTGCTCAACGGTCAAAAAGCTGCAGCTCTCA
AGCCAATGCACGGCAGCGCTCAGCGCCGGCGCGCGCCAGTTGGCGCACAG
GCGGGGCCCGTGCCGCAGGCACTAGAGAGGCTGCGGGGTTGGGAGCACAC
GACGTGCGGGCTCAGCAGCGCGGTGCGGGCGCGCTGGGCACTGGCGCGCC
ATGCAGCACACACATACGCAGAGAGATGCGGGCCTGAATGCGCCAGCGGC
AGCTGCTCAGGCCCCGCGTGCCGCCGGCTCAGCACGCAGCAGCGATGTGT
GGGCGCGCTGTGCGCTGGCGCGCTCTGATGCACACGCGGAGGGATGTCGA
AATGAATGCGCCAGCAGCTGACAGCGCTGCGCCGCCCTCGCCTGTTGCGA
AGTCCCCGCGTGCCGCCGCCTCAGCGCACAGCAGCGCGCCGCCCCAGCAG
TGCTCTCTCTCATTGCAGGCGCCGTGCTGGCTGAGCGCTGTGCTGCTATG
GCAGTGCTCAGCTCAGCAGCCGCGCGCGGTGCTGTCGCCGCTCTCAGCGC
GTGCTCACCTCAGCCTCGAAGCCAACTTCAGTTGAACGCGCGCACCAGAA
GTGGAGCTACAAAATTCTCGAACTTGAGACTAGAAGCGCGACTCTCGTCG
GCAAGCGCGAATGCGCGGCCCTGTGAGCGACTCATGACGTCAGTGCGCAG
TGGCTGGTGCTCGCGATGCTCGCGCGGTATCTCGTGAAAGCCGCACTTGT
CTGCTTGTGCGGCCATGCGCTCTGAGACCCTAGAATTCGGGTTGGGGTTT
AGGGCGTTCATGCATGCCCCTCAAAAATCCGCCCTTTTCGCTTCACACTC
CCGTTTCAAAGTGCCCCCTGCTTCCATGTCCTTCTGTACCCCCCCTCACG
CGCAGGCGCTCGCGTTCATGGCAGAGGTGTTCCGCGCCAACGGGTTCTGC
CGCATGGTGCAGGTCGCCTTTAAGGAGATCCCCGCTGGCAAGTACTACCC
CATACCGTTCTGGGGGCCGGTGCTCCTCGGGACCATCGCCGGCTGCGCTG
GCATGTTCCTGCCATTCGACAAGTGAGTGACGGGGCATGCATGTATGTAC
GCGTATCGTATGCATGCATGTACACGTAAGTATGTATGTACAGTGTACAC
GCATGTATGTATGTATGTATGTACATCTACCGTAGATCACGGAGTATAAA
ACCCCCCCGTTTTAGCAAGTTGCGAGGCTCGTGTTCGGAAGACGGGGGGT
CTTATACAACGTACCCCCCGTCTTGCACGCGCGTGTGTGGCTGCGGTAGC
ATGGTATCGCATGATATATACTGCAGCACACAGCTACTCAAGCAGCAGGC
CACGAATGAACGTTCTGCAGCTCCTATTTCAGCACGCCTGGCTCAAACAC
GCCCTTAGCACTACAAATTCACGGCTGCAGAGGCATTGCGCAGCAACGCA
GCTCGCACCACCTGCTTTGGCGCTGCACCACAACTTGTCCCTCGCGCTGA
ATTATGCCGAAACGACTTGAAGTTTGCGTAACTGCCATGTTCCTTTGGCT
ACAACCCCGGTCTTATACAACACGCGCTTACCCCGGTCTTATACAGCGTA
CCCCCGGTCTTGCGCACACACACACACCTCCCTAGGCGAACGGGGGGTCT
TATACTACAGTATACGATGGGGGGGGTCTTATACGAGAGGGGGGTTTTGT
ACTCCGTGATCTACGGTATGCATGTATGTACACGTATATATGGATGTATG
TGTATGTATCGCCGGCTGCGCGGGCATGCTCTTGCGGGGTGACAAGTGAG
TGACGCGCGGTGTATGTATACGTCTGTAAGCATGGATGTGTACATTGTAC
ACGCATGTTTGTGTTTAGATGGCTCAATGGAACGCCGCAGGGACGCCCTT
GATGATCGCGGCGAGGTGCTGTGGTCACAGGCGTGGCGCTCACGGAGCGC
TGCGCAGGTGCAGTGCGTTGGAAATACTTCGGGAGCAGGCGCCTTCACCT
TGAGAAGTACTGAGAGGTATATAGGTGCTGATGCTCCGTACTACTTGGGG
TATCAAACAGATGGCGCGAGGCGCCGCGCTACCTTGAAGCACCTGAAGTG
TCAAATAGACGTTCACTCCTTGCGTTCAACAGCACTGCACGCGCGCACGC
TCAGCATCCAGGGCGGATCCCCGTGGGCCCCAGCAGAGCGCCTTCTCCAC
AGATGATAGAGATGATTCATTTCCTATTGAAGTAGATACTTCGAAGTACA
TGACATACTTTTAAACGTGCATCAGAAGACGTGACGTGCCGCGCACGCCC
CCTGCGCCCCGGGCTGGCGAGCTCAAGGGCGGGTTGCCATGGCCCCTGCA
GAGCGCCTTCTCTACAGATGATAGTGATTTTTTCATGTCCCACTTGAAGT
ATACTGACGAATAACGTAACATACTTTGAAGTGTTCATCAGAAAACGCTC
CTCTCGTCCGTCCGCGCAAGGGGCTGGCGAGCACCAAGGACGGGTCCCGG
TGGTCCCTGCAGAGGGCTTTCTTGAAAGATAATAGGATGCATTTGAGTCT
GTTTAATGTTTACACATGATGATTCTTCTACATTTAGATCGATCATTTTG
TAGTGCAAACAACTTAGGCAATCGCTCCCCACGCCCGTCTGCGCACGGGG
CTGGCGAGCATCAAGGGCGGGGCGCCGTGGCCCCTGCAGAGGGCTTTCTC
CACAGACGATAGACATGCCTTGCGTCTATTTGAAGTCTACAGATTATGCA
CTCAACATCCTTGAAGTATTGAACAAAACAACTTCAGGTGCCGCGCTCAC
TCCTTGCATTTGGCGCGCACGCTCCTTGTATTCATCCGCAGGGGGCTGGC
GAGCATCAAGGGCGGGTCGCCGTGGCGCCTGCAGAGCGCCTTCTACGGCT
CGCTCGCGTTCCACCTCCTGGCGCACGACCCGCACGTGCTCTTTCTCCAA
TCGAACTAGACACGTTGCATACAAAGTGCTCATCAAAGAACGCCCCCCCC
CCCCCCCATCCCCTCCGCAGGGGGCTGGCGAGCATCAAGGGCGGGTCCCC
CTGGCCCCTGCAGAGCGCCTTCTACGGCTCGCTCGCGTTCCACCTCCTCG
CGCACGACCCGCACGTGCGCGCCGCCCTTGCGCCGTACGCCGGCGACTAC
ACCGCGGACGCCGCGCGCGCGTGCGTCGTCGCCTTCTTCGCCGCCGTCGC
GACGCTCCAGACGTACGCGGGACCGCACTTCAACCCCTTCTCCCCCCTGC
ACCGCGTCGCGTACGCGATTTCGGGGGTCAAGGCGCCGGGCGCGAATGGT
GCGCCTGCTGCGGCGCCCGCGACGGCCGGTGCTCCCGCGGGCGCCGCGCC
GCCCGCCCCTGACTCCAAGAAGGACAAAAAGAACAAGTAGGGCGCGCGCT
GCGTGGGCAGCGGCGGCGGCGGCAGCAGCGGCGGCGGCGGCGGCAGCTGT
GCAGCAGCAGCGGCGGGGCAGCAGAGGCGGCGGCGGCAGCTGCGGCGGCG
GCAGCTGCGGCGGCGGCGGCAGCGGCGGCAGGGCAGCAAAGGCGGCGGCG
GCAGCGGCGGTGGCGCAGCGGAGGCGGCGGCGGCGGCGACGGCAGCGGCG
CCTGACTCGAAGAGCAATAAGAAGGGGGGGGGGGGGGAC
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Coding sequence (CDS) from alignment at Contig_22:14026..20564+

>mRNA_6314 ID=mRNA_6314|Name=jgi.p|Trimin1|43532|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=867bp|location=Sequence derived from alignment at Contig_22:14026..20564+ (Tribonema minus UTEX_B_3156 )
ATGGCGTACGACATGTCTCTCGACACCGCGCATGATTTTCTGTTGCAAGA
TCTGCCGTACATGCCAGAGGTTTGCCTCTTCATCTATGCCCTGGTGGGCG
CAGCCAGGGTCAAGAGCGGACCTGCCAAGAACATGTACTGGGCGCAGAGC
CTCGTGCTGACGTTCCTCATGTGCTTCGGCGGCGGCATTGTGGCGCCCTT
CCTGCTGGGCAAGCCGCCGGTGATCCTCATCAACGACTTGCTGGTGGTGG
CGGTGCTGGGGTCGTGGCTGGTGGTGAACCGCTTGGAGGAGCCGGTGGGG
GCGCTGCTGCGGGCGCCCGTAATCAGCCAGGCGCTCGCGTTCATGGCAGA
GGTGTTCCGCGCCAACGGGTTCTGCCGCATGGTGCAGGTCGCCTTTAAGG
AGATCCCCGCTGGCAAGTACTACCCCATACCGTTCTGGGGGCCGGTGCTC
CTCGGGACCATCGCCGGCTGCGCTGGCATGTTCCTGCCATTCGACAAGGG
GCTGGCGAGCATCAAGGGCGGGTCCCCCTGGCCCCTGCAGAGCGCCTTCT
ACGGCTCGCTCGCGTTCCACCTCCTCGCGCACGACCCGCACGTGCGCGCC
GCCCTTGCGCCGTACGCCGGCGACTACACCGCGGACGCCGCGCGCGCGTG
CGTCGTCGCCTTCTTCGCCGCCGTCGCGACGCTCCAGACGTACGCGGGAC
CGCACTTCAACCCCTTCTCCCCCCTGCACCGCGTCGCGTACGCGATTTCG
GGGGTCAAGGCGCCGGGCGCGAATGGTGCGCCTGCTGCGGCGCCCGCGAC
GGCCGGTGCTCCCGCGGGCGCCGCGCCGCCCGCCCCTGACTCCAAGAAGG
ACAAAAAGAACAAGTAG
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