mRNA_6299 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|167011
Unique NamemRNA_6299
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|167011 vs. uniprot
Match: A0A835YRQ2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRQ2_9STRA)

HSP 1 Score: 167 bits (423), Expect = 5.310e-42
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 1 
Query:    1 MLKLYACERLQRLREGVGDLVTLSALNLGGXXXXXXXXXXXXXXXXXXXXXXASLDARRLLPSFRCFAVLTSLDLRGTDFTRFPAACIRDLTALRTXXXXXXXXXXXXXGVCALAELXRLSLYXCTGL 384
            MLKLYACERLQRLREGVGDLVTLSALNLGGXXXXXXXXXXXXXXXXXXXXXXASLDARRLLPSFRCFAVLTSLDLRGTDFTRFPAACIRDLTALRTXXXXXXXXXXXXXGVCALAELXRLSLYXCTGL
Sbjct:    1 MLKLYACERLQRLREGVGDLVTLSALNLGGXXXXXXXXXXXXXXXXXXXXXXASLDARRLLPSFRCFAVLTSLDLRGTDFTRFPAACIRDLTALRTXXXXXXXXXXXXXGVCALAELXRLSLYXCTGL 128
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BLAST of jgi.p|Trimin1|167011 vs. uniprot
Match: A0A836CQ25_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CQ25_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 3.500e-8
Identity = 37/71 (52.11%), Postives = 43/71 (60.56%), Query Frame = 1 
Query:  157 ASLDARRLLPSFRCFAVLTSLDLRGTDFTRFPAACIRDLTALRTXXXXXXXXXXXXXGVCALAELXRLSLY 369
            AS++AR LL SFRCFA LT+L L G+D  RF A CI  LTALR+             GVC LA L  LSL+
Sbjct:  176 ASMNARGLLSSFRCFATLTALCLHGSDSARFSAECIGALTALRSLNLGCSQLTKLPEGVCTLASLTDLSLW 246
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BLAST of jgi.p|Trimin1|167011 vs. uniprot
Match: A0A835YXX7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXX7_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 5.320e-6
Identity = 31/68 (45.59%), Postives = 38/68 (55.88%), Query Frame = 1 
Query:  163 LDARRLLPSFRCFAVLTSLDLRGTDFTRFPAACIRDLTALRTXXXXXXXXXXXXXGVCALAELXRLSL 366
            L A RLLPSFRC A+LTSLD++  D  +FP  C+R++ ALRT              VC L  L  L L
Sbjct:  342 LSADRLLPSFRCLAMLTSLDVQRIDTGKFPEKCVREMAALRTLDLRHWQAAALPEAVCDLRRLTHLDL 409
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|167011 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835YRQ2_9STRA5.310e-42100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CQ25_9STRA3.500e-852.11Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YXX7_9STRA5.320e-645.59Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_47contigContig_47:862951..866693 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|167011|e_gw1.47.94.1
Hectar predicted targeting categoryother localisation
TranscriptId167333
TrackFilteredModels1
ProteinId167011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|167011gene_6299Tribonema minus UTEX_B_3156 geneContig_47 862951..866693 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|167011Trimin1|167011|e_gw1.47.94.1Tribonema minus UTEX_B_3156 polypeptideContig_47 862951..866693 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6299_3exon_6299_3Tribonema minus UTEX_B_3156 exonContig_47 862951..863313 -
exon_6299_2exon_6299_2Tribonema minus UTEX_B_3156 exonContig_47 863572..864088 -
exon_6299_1exon_6299_1Tribonema minus UTEX_B_3156 exonContig_47 865996..866693 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6299CDS_6299Tribonema minus UTEX_B_3156 CDSContig_47 865996..866693 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6299 ID=mRNA_6299|Name=jgi.p|Trimin1|167011|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1578bp|location=Sequence derived from alignment at Contig_47:862951..866693- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCAAGCTGTATGCCTGTGAGAGGCTTCAAAGGCTGCGGGAAGGCGT
TGGCGACCTCGTGACGCTGTCGGCGCTCAACTTGGGTGGGTGCAGCGCTC
TGCAGAGCCTGCCTGTCAGCGTCCAGGCCCTGACGCAGTTGAAGTCGCTC
GGTCTGGCTTCCTTGGACGCTAGAAGGCTGCTGCCCAGTTTCCGCTGCTT
CGCGGTGCTGACGTCGCTGGATCTGCGCGGCACTGACTTCACGCGCTTCC
CCGCGGCGTGCATACGCGACCTGACGGCGCTGCGGACGCTCGACCTGGGC
GCCTCGCAGCTCATGACGCTGCCGCCGGGCGTCTGCGCGCTTGCAGAGCT
GACGCGCCTCAGCTTGTATGGCTGCACCGGGCTCGTGCACCTGCCGGACG
CCATCGGCGAGCTGCGCGCGCTGACAGCGCTCAACCTGGCCGATTGCCGC
GCGCTGGCGCGCCTGCCAGATGGCATCGGCGGTCTTCGCGCGCTGACGCA
GCTGCTACTGGCGGACTGCTACGCGCTCACAGCCCTGCCGGAGAGCATCG
GCGAGCTGGCGGCGCTGACGTCCCTCAACCTGCAAGACTGCAGAGCGCTG
ACGCGGCTGCCGGAGTCCATCGGCGGCCTGACAGCGCTGACGGACCTCAC
CCTGCGCAGTTGCCAAGCGCTGATGCAGCTGCCGGAGCGCTTTGGCGACC
TGCCGGACAGCATAGGCGAAGTGACGACGCTGACGGCGCTGACGCTGCGC
GACTGCCGCCGGCTCGCGGGCCTCCCGGAGAGCATCGGCGGCCTGACGCA
GCTCACCGCGCTTTCGCTGCGCCACTGCCACAAGCTCAGGCGCCTGCCCG
AGAGCGTGGGCGGCCTCACGGCGCTGGCGACGCTGGACCTGGCCTTCTGC
ACCGCACTCGTCGGTGTGCCTGAGAGCTTCGGCGGCGTGTCCGCGCTGAC
AGCGCTCAACCTGACCGACTGCCGCGCGCTGCCCCGCCTGCCGAACCGCC
TCGGCAGCCTCGCCGCGCTGGCCACGCTCGACTTGTCTTTGTGCAGCGTG
CTGCAGCGCCTGCTAGACAGCATTGGCGGTCTGGCGACGCTGACGGCGCT
CACGTTGCGCGGCTGCGACAGGCTTCGGCGCCTGCCAGACAGCATCGGCG
ATCTGGCGGCGCTGACGGAGCTCGACCTGGACGATTGCAGCGCTCTGCAG
AGCTTGCCGGACGGCCTCACATGCCTGCCGGACGCCATAGGCGAGCTGCG
CGCGCTGACAGCGCTCGACCTGACCAAGTGCAGAGCGCTGACGCGCCTGC
CCGACGGCATCTGCCGTCTGCGCGCGCTCACGCGGCTGACGCTGCGGCGG
TGCTCCGCGCTTGAGGAACTGCTGGAGTCCATCGGCGGCCTGGCAGCGCT
GACGGACCTCAACCTGCGCAGTTGCCGAGCGCTGATGTGGCTACCGGAGC
GCATTGGCGAGCTGGCGGCGCTTCAGCGCATTGACCTTTTCGACTGCAGC
GGACTGCAATGTGTGCCAGACACGCTCGTTTGTGTGCCCGGGAGCTGGGA
CGTTTATGCCGTAGCCTCTACAGATTGA
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protein sequence of jgi.p|Trimin1|167011

>Trimin1|167011|e_gw1.47.94.1 ID=Trimin1|167011|e_gw1.47.94.1|Name=jgi.p|Trimin1|167011|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=526bp
MLKLYACERLQRLREGVGDLVTLSALNLGGCSALQSLPVSVQALTQLKSL
GLASLDARRLLPSFRCFAVLTSLDLRGTDFTRFPAACIRDLTALRTLDLG
ASQLMTLPPGVCALAELTRLSLYGCTGLVHLPDAIGELRALTALNLADCR
ALARLPDGIGGLRALTQLLLADCYALTALPESIGELAALTSLNLQDCRAL
TRLPESIGGLTALTDLTLRSCQALMQLPERFGDLPDSIGEVTTLTALTLR
DCRRLAGLPESIGGLTQLTALSLRHCHKLRRLPESVGGLTALATLDLAFC
TALVGVPESFGGVSALTALNLTDCRALPRLPNRLGSLAALATLDLSLCSV
LQRLLDSIGGLATLTALTLRGCDRLRRLPDSIGDLAALTELDLDDCSALQ
SLPDGLTCLPDAIGELRALTALDLTKCRALTRLPDGICRLRALTRLTLRR
CSALEELLESIGGLAALTDLNLRSCRALMWLPERIGELAALQRIDLFDCS
GLQCVPDTLVCVPGSWDVYAVASTD*
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mRNA from alignment at Contig_47:862951..866693-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6299 ID=mRNA_6299|Name=jgi.p|Trimin1|167011|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3743bp|location=Sequence derived from alignment at Contig_47:862951..866693- (Tribonema minus UTEX_B_3156 )
ATGCTCAAGCTGTATGCCTGTGAGAGGCTTCAAAGGCTGCGGGAAGGCGT
TGGCGACCTCGTGACGCTGTCGGCGCTCAACTTGGGTGGGTGCAGCGCTC
TGCAGAGCCTGCCTGTCAGCGTCCAGGCCCTGACGCAGTTGAAGTCGCTC
GGTCTGGCTTCCTTGGACGCTAGAAGGCTGCTGCCCAGTTTCCGCTGCTT
CGCGGTGCTGACGTCGCTGGATCTGCGCGGCACTGACTTCACGCGCTTCC
CCGCGGCGTGCATACGCGACCTGACGGCGCTGCGGACGCTCGACCTGGGC
GCCTCGCAGCTCATGACGCTGCCGCCGGGCGTCTGCGCGCTTGCAGAGCT
GACGCGCCTCAGCTTGTATGGCTGCACCGGGCTCGTGCACCTGCCGGACG
CCATCGGCGAGCTGCGCGCGCTGACAGCGCTCAACCTGGCCGATTGCCGC
GCGCTGGCGCGCCTGCCAGATGGCATCGGCGGTCTTCGCGCGCTGACGCA
GCTGCTACTGGCGGACTGCTACGCGCTCACAGCCCTGCCGGAGAGCATCG
GCGAGCTGGCGGCGCTGACGTCCCTCAACCTGCAAGACTGCAGAGCGCTG
ACGCGGCTGCCGGAGTCCATCGGCGGCCTGACAGCGCTGACGGACCTCAC
CCTGCGCAGTTGCCAAGCGCTGATGCAGCTGCCGGAGCGCTTTGGCGAGT
TGACGGCGCTTCAGCACATCGACCTTTCTAACTGCATGCTGCGGAGCGTG
CCAGACACACTCGTTCGTGTGCCCGGGAGCTGGGCAACCTATGCCGTCGC
CATTACTAACCAGGCAGAAGCGCGCCAGAGTGCTCAGAATGAAACGCTGT
AGGTGTCCTGCATTGGCGTTGACATGATGGGATGGGGTGAGTCTGGCTTG
CTTGAGCTTTGCAAGTTAGGCGTATGATACATTTGTGCTGCAACACCAGT
TGCAAGCACAGGAAGACGAACAATGTGATGTTCTGCATTGTGACATCTTG
CTGCAATATTGGACTAAATGCTCGTTGCCCGTCAAAGTGGCGCTGTGCAG
CAGTGTAGCATCTTGGCTGTCCCTGCGTGGCACTTAGAGTACACGTCACG
TGCTGCTGGCCCGCTGGAGCTCATGTGAACTGGCTGTGAATTATTGTGCA
TTCTGTGCTCGCATATGGTGGCGGGGTATGTATTGCGCACTTGCATTGTC
ACATCGAGAGCGCCAAGTATGAGCGGGAGAGGCAAATATGAGCACCTGGA
TTTGCCAACACATCACCTACTCGTTGACGCTTGCTCAACAGTGGATGTTA
TATTTGAGACTACTGTGTTCCAAGCTTGCATAGATTGCGTGGAATCAGCA
GGTCAGCATTTTCACAACGTGGCCCCATTGAGCTTACTGATAATGTCACA
AGCACTTTGCAGGCAGAAAGGTTAGAGCCAGAGATTTTAATAATTGCCCG
TACGTATGGACTTGTATTTATAAAGGCCCAAGGGAGGCCGGGTTGCCTAT
GCAATCGAAAAGCTTGCGTCAACGCAGCAGCCTAGTCTGCGCTGAGACTT
TGGTGGGTATCGAACCCGACTCCTCCAACTGTTAAGACAGGGGCACTCCC
AACTGTACCACAATTAATTGCCCGTACACCCCGTGGCAGGACGATGCGAG
TTTTTGGCCGGGAAAACTAGTGCGTAACCTGTTGTGTGAGGCAACTGTCT
GGATGCTTCACGTCCAACTCGCGACACAAGGAAAAAACGTCTTTTTTTGA
AAAAAAACACAGATGGGTTACTACTGCTTGGCATTGGGCGAGAATAAATC
CTTTGAAGTGAAGTTTGGGCTTTCGCTTTCGCGCTTTTTTTTGAAAGCAA
AGCGAGACAGCGTGCGTGTTGGCTCCGGAGCGATCAGCGCAGTAGGCTGG
CGTTGTTCAAGCATCAACAAGCTAGCCTGTTTGAAAGCGATCGCCGAATC
CGACACCGACAACACACGATGACTCGGAGCGGCGAAAGCTATGGTGCTCG
CACAGCACAGGGGTTTCCCTCGCAGAAAGACCATGCGATTGCGGACGGGC
ATGAGGTGGTGAGCATGGATAAATTCGTCCGCGTGCTCTGGGTGCTGGCG
CAGACCCAACTGCTGCCCAAACCCGCCTGGAGTCTGTGCAGATTTGTGCA
CCGATCCGTGAGACCCAGGGTGCGCCTGCTAGTCAACGCCAAGAAGGTGC
CCCTGACTGCAGCGGCTCAAGCGTTCGCCAGCAAAACCGTCGTCAACCTG
GCGCTGTCCAAGTACTTCGACGCGGATCTGCTCCTCGCCTTCGCCGAAAG
CCCTGCCGCATTCGGCGCGGGGGAAACTTCGATGCCTTCTACAAGGACGT
CAAGGTCCTCGCCTTGTGCCGGCCTGGTGTGGGGCCTGCGCGCATTCCGC
GATCGCTGCAGGAGCTGCGCCTGGAGGACTGCGAGCCCGATCTTGTGTTG
GCGCTGCTGCGCGCGCTAAACGGCGCCGCGCATCCCGACTTTCAGTGCGA
TGCGCCAGCGCCGGCGCGGCGCCCGCCGCTGCTTGATGCACCGGGGCGCT
GCGGCTGCCTTTCAGCGATGACATCGCTCAGCATCTCGGATTGCGACATC
TTCAGCCTGCCGGACAGCATAGGCGAAGTGACGACGCTGACGGCGCTGAC
GCTGCGCGACTGCCGCCGGCTCGCGGGCCTCCCGGAGAGCATCGGCGGCC
TGACGCAGCTCACCGCGCTTTCGCTGCGCCACTGCCACAAGCTCAGGCGC
CTGCCCGAGAGCGTGGGCGGCCTCACGGCGCTGGCGACGCTGGACCTGGC
CTTCTGCACCGCACTCGTCGGTGTGCCTGAGAGCTTCGGCGGCGTGTCCG
CGCTGACAGCGCTCAACCTGACCGACTGCCGCGCGCTGCCCCGCCTGCCG
AACCGCCTCGGCAGCCTCGCCGCGCTGGCCACGCTCGACTTGTCTTTGTG
CAGCGTGCTGCAGCGCCTGCTAGACAGCATTGGCGGTCTGGCGACGCTGA
CGGCGCTCACGTTGCGCGGCTGCGACAGGCTTCGGCGCCTGCCAGACAGC
ATCGGCGATCTGGCGGCGCTGACGGAGCTCGACCTGGACGATTGCAGCGC
TCTGCAGAGCTTGCCGGACGGCGTCCGGGCCCTGACGCAGTTGAAGTCGC
TCGGTCTGGCTTCCTTGGACGCTCAACGGCTGCTGTCCAGTTTCCATTGC
CTCGCGGCGCTGACGTCTCTCGGCCTGCACAACACCGACCTCGCGCGCTT
CCCGGCGCAGTGCATCGGCGACCTGACGGCGCTGCGGACGCTCCACCTGA
GCGCTGCGCAGCTCACGACGCTGCCGTGGCGCGTCTGCGCGCTCGCGACG
CTGACGCACCTCAACATGGACGATTCTCAGCTCACATGCCTGCCGGACGC
CATAGGCGAGCTGCGCGCGCTGACAGCGCTCGACCTGACCAAGTGCAGAG
CGCTGACGCGCCTGCCCGACGGCATCTGCCGTCTGCGCGCGCTCACGCGG
CTGACGCTGCGGCGGTGCTCCGCGCTTGAGGAACTGCTGGAGTCCATCGG
CGGCCTGGCAGCGCTGACGGACCTCAACCTGCGCAGTTGCCGAGCGCTGA
TGTGGCTACCGGAGCGCATTGGCGAGCTGGCGGCGCTTCAGCGCATTGAC
CTTTTCGACTGCAGCGGACTGCAATGTGTGCCAGACACGCTCGTTTGTGT
GCCCGGGAGCTGGGACGTTTATGCCGTAGCCTCTACAGATTGA
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Coding sequence (CDS) from alignment at Contig_47:862951..866693-

>mRNA_6299 ID=mRNA_6299|Name=jgi.p|Trimin1|167011|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1578bp|location=Sequence derived from alignment at Contig_47:862951..866693- (Tribonema minus UTEX_B_3156 )
ATGCTCAAGCTGTATGCCTGTGAGAGGCTTCAAAGGCTGCGGGAAGGCGT
TGGCGACCTCGTGACGCTGTCGGCGCTCAACTTGGGTGGGTGCAGCGCTC
TGCAGAGCCTGCCTGTCAGCGTCCAGGCCCTGACGCAGTTGAAGTCGCTC
GGTCTGGCTTCCTTGGACGCTAGAAGGCTGCTGCCCAGTTTCCGCTGCTT
CGCGGTGCTGACGTCGCTGGATCTGCGCGGCACTGACTTCACGCGCTTCC
CCGCGGCGTGCATACGCGACCTGACGGCGCTGCGGACGCTCGACCTGGGC
GCCTCGCAGCTCATGACGCTGCCGCCGGGCGTCTGCGCGCTTGCAGAGCT
GACGCGCCTCAGCTTGTATGGCTGCACCGGGCTCGTGCACCTGCCGGACG
CCATCGGCGAGCTGCGCGCGCTGACAGCGCTCAACCTGGCCGATTGCCGC
GCGCTGGCGCGCCTGCCAGATGGCATCGGCGGTCTTCGCGCGCTGACGCA
GCTGCTACTGGCGGACTGCTACGCGCTCACAGCCCTGCCGGAGAGCATCG
GCGAGCTGGCGGCGCTGACGTCCCTCAACCTGCAAGACTGCAGAGCGCTG
ACGCGGCTGCCGGAGTCCATCGGCGGCCTGACAGCGCTGACGGACCTCAC
CCTGCGCAGTTGCCAAGCGCTGATGCAGCTGCCGGAGCGCTTTGGCGACC
TGCCGGACAGCATAGGCGAAGTGACGACGCTGACGGCGCTGACGCTGCGC
GACTGCCGCCGGCTCGCGGGCCTCCCGGAGAGCATCGGCGGCCTGACGCA
GCTCACCGCGCTTTCGCTGCGCCACTGCCACAAGCTCAGGCGCCTGCCCG
AGAGCGTGGGCGGCCTCACGGCGCTGGCGACGCTGGACCTGGCCTTCTGC
ACCGCACTCGTCGGTGTGCCTGAGAGCTTCGGCGGCGTGTCCGCGCTGAC
AGCGCTCAACCTGACCGACTGCCGCGCGCTGCCCCGCCTGCCGAACCGCC
TCGGCAGCCTCGCCGCGCTGGCCACGCTCGACTTGTCTTTGTGCAGCGTG
CTGCAGCGCCTGCTAGACAGCATTGGCGGTCTGGCGACGCTGACGGCGCT
CACGTTGCGCGGCTGCGACAGGCTTCGGCGCCTGCCAGACAGCATCGGCG
ATCTGGCGGCGCTGACGGAGCTCGACCTGGACGATTGCAGCGCTCTGCAG
AGCTTGCCGGACGGCCTCACATGCCTGCCGGACGCCATAGGCGAGCTGCG
CGCGCTGACAGCGCTCGACCTGACCAAGTGCAGAGCGCTGACGCGCCTGC
CCGACGGCATCTGCCGTCTGCGCGCGCTCACGCGGCTGACGCTGCGGCGG
TGCTCCGCGCTTGAGGAACTGCTGGAGTCCATCGGCGGCCTGGCAGCGCT
GACGGACCTCAACCTGCGCAGTTGCCGAGCGCTGATGTGGCTACCGGAGC
GCATTGGCGAGCTGGCGGCGCTTCAGCGCATTGACCTTTTCGACTGCAGC
GGACTGCAATGTGTGCCAGACACGCTCGTTTGTGTGCCCGGGAGCTGGGA
CGTTTATGCCGTAGCCTCTACAGATTGA
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